Miyakogusa Predicted Gene

Lj3g3v0428880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428880.1 Non Characterized Hit- tr|A5BT31|A5BT31_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,64.62,2e-17,HOMEOBOX_2,Homeodomain; Homeodomain,Homeodomain; no
description,Homeodomain-like; coiled-coil,NULL; ,CUFF.40745.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061040.1 | sequence-specific DNA-binding transcription fa...   576   e-164
Medtr3g110260.1 | DNA-binding protein, putative | HC | chr3:5145...   180   3e-45
Medtr8g014075.1 | sequence-specific DNA-binding transcription fa...   144   1e-34

>Medtr8g061040.1 | sequence-specific DNA-binding transcription
           factor | HC | chr8:21158982-21150809 | 20130731
          Length = 375

 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/377 (76%), Positives = 311/377 (82%), Gaps = 5/377 (1%)

Query: 1   MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
           MGRPPSNGGPAFRFTQ EV EMEAIL EHNNAMPARDVL  LA+KFSESPDRKGKITVQM
Sbjct: 1   MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQM 60

Query: 61  KQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSAPVRNMSQPIAAPILTGPGSVPTTA 120
           KQVWNWFQNKRYAIRAKSSKTP KLNITPMPR D  P R M+QP A+PI     SV TTA
Sbjct: 61  KQVWNWFQNKRYAIRAKSSKTPAKLNITPMPRTDLTPGRIMTQPTASPIPAPSASVQTTA 120

Query: 121 KVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRRN 180
           K  PENSVMEFEAKS RDGAWYDVA+FLS+R+LESSDPEVLVRFAGFG EEDEW+NVR+N
Sbjct: 121 KAAPENSVMEFEAKSGRDGAWYDVATFLSYRHLESSDPEVLVRFAGFGSEEDEWINVRKN 180

Query: 181 VRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLVRY 240
           VRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLD+Q            FLVRY
Sbjct: 181 VRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRY 240

Query: 241 DHDQSEEIVPLRKVCRRPETDYRLQQLHAVSDSAHVDQQKSGMDA-ANVYTIRVTSSSET 299
           DHDQSEEIVPLRK+CRRPETDYRL QLHAV+D+A  DQQK  +D  ANV+  RVT+ SE 
Sbjct: 241 DHDQSEEIVPLRKICRRPETDYRLHQLHAVNDAAPTDQQKIALDHPANVHGARVTNPSEM 300

Query: 300 VPK-QQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAET-TDVQPGNSTIVPGSVPFPSIV 357
           V K QQ+ NIH + TPVLQ NVS+ PQSMNVDP KAET  DVQ GNS + P S  F  I+
Sbjct: 301 VQKQQQIANIH-IVTPVLQTNVSIPPQSMNVDPMKAETKADVQAGNS-VTPSSAAFTGII 358

Query: 358 TTTSAPEVPTQNMAEGK 374
            T+S PEV TQN+AEGK
Sbjct: 359 ATSSVPEVSTQNLAEGK 375


>Medtr3g110260.1 | DNA-binding protein, putative | HC |
           chr3:51452718-51446132 | 20130731
          Length = 232

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 144/262 (54%), Gaps = 32/262 (12%)

Query: 1   MGRPPSNGGPAFR-FTQNEVAEMEAILQEHNNAMP-ARDVLAVLAEKFSESPDRKGKITV 58
           M R      P F  FT +E+  ME +L+E +       D    LA+ F+ S  R GK  +
Sbjct: 1   MDRLRPRNRPIFSGFTNSEIERMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVI 60

Query: 59  QMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSAPVRNMSQPIAAPILTGPGSVPT 118
           +  ++ +WFQ +       S K P    ++P                            T
Sbjct: 61  KWTEIHSWFQTRL----QDSPKVPQNELVSPQC--------------------------T 90

Query: 119 TAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVR 178
             + T ++S +EFEA+S++D AWYDV +FL+HR+L + +PEV VRF GFG EEDEWVN++
Sbjct: 91  EGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFGAEEDEWVNIK 150

Query: 179 RNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLV 238
            +VR RS+P E++EC  +  GD +LCFQE ++QA+Y+DAH+++ Q             L+
Sbjct: 151 NSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILI 210

Query: 239 RYDHDQSEEIVPLRKVCRRPET 260
           RYDHD +EE V LR++C RP +
Sbjct: 211 RYDHDNNEERVRLRRLCHRPRS 232


>Medtr8g014075.1 | sequence-specific DNA-binding transcription
           factor | HC | chr8:4390719-4385033 | 20130731
          Length = 270

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 1   MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
           M    SN  P  + + +E+ E+E I  +        +    +A  FS S +  GK ++  
Sbjct: 1   MKELTSNESPFPKLSLDEILELERIYNDVGEKSLDPNFCKDIAANFSSSSNSDGKTSLTW 60

Query: 61  KQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSAPVRNMSQPIAAPILTGPGSVPTTA 120
           +QV  W QNK    +   + +P  LN+       S+ ++            G  S P   
Sbjct: 61  EQVQQWLQNKHTETKGHFASSPEGLNLVVDLSGKSSSIK------------GNKSSPKPK 108

Query: 121 KVTPEN-SVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRR 179
            +   + S + FEA S +D AW+DV+ FL++R L + + EV VR+ GFG +EDEW+NV+ 
Sbjct: 109 GIQAADLSELAFEAVSIKDNAWHDVSMFLNYRVLCTGELEVRVRYHGFGKDEDEWINVKY 168

Query: 180 NVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLVR 239
            VR RS+P E+SEC  V  G L+LCF    + ALY DA VL  Q            F VR
Sbjct: 169 GVRQRSIPLEASECHKVKEGHLVLCFHVKSDYALYCDAIVLKIQRREHDSEECSCIFTVR 228

Query: 240 YDHDQSEEIVPLRKVCRRP 258
           + HD+SEE V    +C RP
Sbjct: 229 FYHDKSEEEVRWDSLCCRP 247