Miyakogusa Predicted Gene

Lj3g3v0428800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428800.1 tr|G7K4N4|G7K4N4_MEDTR Pre-mRNA-splicing factor
ISY1-like protein OS=Medicago truncatula GN=MTR_5g09,89.11,0,ISY1
domain-like,NULL; GB DEF: DBJ|BAA86474.1 (HYPOTHETICAL PROTEIN
AT3G18790/MVE11_17),NULL; FAMILY,CUFF.40722.1
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095510.1 | Pre-mRNA-splicing factor ISY1 | HC | chr5:4174...   413   e-116
Medtr5g095510.2 | Pre-mRNA-splicing factor ISY1 | HC | chr5:4174...   413   e-116

>Medtr5g095510.1 | Pre-mRNA-splicing factor ISY1 | HC |
           chr5:41743574-41745099 | 20130731
          Length = 303

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/303 (69%), Positives = 223/303 (73%)

Query: 1   MARNEEKAQSMLNRFITMKAXXXXXXXXXXXFLATECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNRFITMKA           FLA+ECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLNEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNY RHSAKMTDLDGNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYARHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERL 180
           SGRGPGYRYFGAAKKLPGVRELF+KPPELRKRRTRYDIYKRI+AAYYGYRDDEDGILER+
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRINAAYYGYRDDEDGILERV 180

Query: 181 EPSXXXXXXXXXXXXWYRLDRIRQEARKGVKSGEVAEVSAAVXXXXXXXXXXXXXXXXXX 240
           E              W RLDRIR+EARK V+SGEV EV+AA                   
Sbjct: 181 EAPAEECMRREAVEEWERLDRIRKEARKAVRSGEVVEVTAATREILHEEEEDVVEEERMK 240

Query: 241 XXXXXXXXXXXXXXFVVHVPLPDXXXXXXXXXXXXXXXXXNKYVSEDLMDEQSEAKDMLN 300
                         FVVHVPLPD                 N+YVS+ LM+EQ+EAKD+LN
Sbjct: 241 EREMRERLDEKEREFVVHVPLPDEKEIEKMVLQKKKADLLNRYVSDVLMEEQTEAKDLLN 300

Query: 301 IHR 303
           IHR
Sbjct: 301 IHR 303


>Medtr5g095510.2 | Pre-mRNA-splicing factor ISY1 | HC |
           chr5:41743602-41747679 | 20130731
          Length = 303

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/303 (69%), Positives = 223/303 (73%)

Query: 1   MARNEEKAQSMLNRFITMKAXXXXXXXXXXXFLATECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNRFITMKA           FLA+ECRDL+EADKWRQQIMREIGRKVAE
Sbjct: 1   MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLNEADKWRQQIMREIGRKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNY RHSAKMTDLDGNIVDVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYARHSAKMTDLDGNIVDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERL 180
           SGRGPGYRYFGAAKKLPGVRELF+KPPELRKRRTRYDIYKRI+AAYYGYRDDEDGILER+
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRINAAYYGYRDDEDGILERV 180

Query: 181 EPSXXXXXXXXXXXXWYRLDRIRQEARKGVKSGEVAEVSAAVXXXXXXXXXXXXXXXXXX 240
           E              W RLDRIR+EARK V+SGEV EV+AA                   
Sbjct: 181 EAPAEECMRREAVEEWERLDRIRKEARKAVRSGEVVEVTAATREILHEEEEDVVEEERMK 240

Query: 241 XXXXXXXXXXXXXXFVVHVPLPDXXXXXXXXXXXXXXXXXNKYVSEDLMDEQSEAKDMLN 300
                         FVVHVPLPD                 N+YVS+ LM+EQ+EAKD+LN
Sbjct: 241 EREMRERLDEKEREFVVHVPLPDEKEIEKMVLQKKKADLLNRYVSDVLMEEQTEAKDLLN 300

Query: 301 IHR 303
           IHR
Sbjct: 301 IHR 303