Miyakogusa Predicted Gene

Lj3g3v0424000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0424000.1 Non Characterized Hit- tr|I1J1V7|I1J1V7_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,35.83,0.00000000000001,seg,NULL,CUFF.40671.1
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g066700.1 | YUP8H12R.23 protein, putative | HC | chr2:2787...   254   6e-68

>Medtr2g066700.1 | YUP8H12R.23 protein, putative | HC |
           chr2:27872839-27874972 | 20130731
          Length = 247

 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 136/232 (58%), Positives = 170/232 (73%), Gaps = 8/232 (3%)

Query: 4   EQNQRMMKNESNGEKSKALMTRDLLGGSS-IESQELDLDMRVPSGWEKRLDLQSGKLYIQ 62
           ++  R + N+S+GEKS AL+TRDLLGGSS IESQELDLD++VP+GWEKRLDLQSGK+YIQ
Sbjct: 19  DEQHRTVGNDSHGEKSTALITRDLLGGSSSIESQELDLDLQVPNGWEKRLDLQSGKVYIQ 78

Query: 63  RHNSLA-SPVSEHKCQQNQAGPQLKDLKFTPPSSKIPLNLFYDTSLDLKLVSYSLPLSNN 121
           R N+L  SP+SE K Q     P+L+DL F    S +PLNLF +++LDLKLVS +LP SN 
Sbjct: 79  RCNTLTQSPISEQKNQGKSTPPKLQDLNFPSTQSNVPLNLFDESNLDLKLVSSALPTSN- 137

Query: 122 YESVCTLDKVKSALERAEKEPAILRKRAXXXXXXXXXXXXXXXXXXXXIIT---QEEEEC 178
           Y+SVCTLDKVKSALERAEKEP  +RKR+                    +     Q+EE  
Sbjct: 138 YQSVCTLDKVKSALERAEKEP--IRKRSTFLKSSISATSPSYSSSSSSMREPNHQDEESD 195

Query: 179 EVKILASPVATGCPGCLTYVLVTKNNPKCPRCNTNVPFRLMKKPRLDLNLSI 230
           + K+++SP+A GCPGCL+YVL+ KNNPKCPRCN+ VP   MKKPR+DLN+SI
Sbjct: 196 QEKMISSPMAAGCPGCLSYVLIMKNNPKCPRCNSIVPIPTMKKPRIDLNISI 247