Miyakogusa Predicted Gene

Lj3g3v0422710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0422710.1 Non Characterized Hit- tr|I1MI58|I1MI58_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53483
PE,84.75,0,RECA_2,DNA recombination/repair protein RecA/RadB,
ATP-binding domain; DNA REPAIR PROTEIN RECA,DNA r,CUFF.40664.1
         (253 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g461220.1 | DNA repair and recombination protein | HC | ch...   358   3e-99
Medtr2g039670.1 | DNA repair and recombination protein | HC | ch...   163   1e-40
Medtr4g126040.1 | DNA repair protein RecA, putative | HC | chr4:...   162   4e-40
Medtr7g090880.1 | DNA repair protein RecA, putative | HC | chr7:...   123   2e-28
Medtr4g062540.3 | DNA repair protein RAD51 | HC | chr4:23254009-...    52   5e-07
Medtr4g062540.5 | DNA repair protein RAD51 | HC | chr4:23254009-...    52   6e-07
Medtr4g062540.2 | DNA repair protein RAD51 | HC | chr4:23254009-...    52   8e-07
Medtr4g062540.1 | DNA repair protein RAD51 | HC | chr4:23254009-...    51   8e-07
Medtr4g062540.8 | DNA repair protein RAD51 | HC | chr4:23254009-...    50   2e-06
Medtr4g062540.6 | DNA repair protein RAD51 | HC | chr4:23254009-...    50   2e-06
Medtr4g062540.9 | DNA repair protein RAD51 | HC | chr4:23254009-...    50   2e-06
Medtr4g062540.7 | DNA repair protein RAD51 | HC | chr4:23254009-...    50   2e-06
Medtr4g062540.4 | DNA repair protein RAD51 | HC | chr4:23254009-...    50   2e-06

>Medtr8g461220.1 | DNA repair and recombination protein | HC |
           chr8:21510596-21499546 | 20130731
          Length = 418

 Score =  358 bits (918), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/228 (82%), Positives = 196/228 (85%), Gaps = 13/228 (5%)

Query: 22  MDLVF-PLKPHTLILNAPSSS--LFLPRRLPVKFRSLSPLCAS---KHVKIQCELEGKIN 75
           MD VF   KPHT IL  PSSS  LF P +   KF SL PL AS   KHVKIQCEL    N
Sbjct: 1   MDFVFFTPKPHTFILKPPSSSSLLFHPIK---KFHSLPPLFASSSSKHVKIQCEL----N 53

Query: 76  GALSGDLDPRFIDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDCALG 135
           G+LS D D RF+DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETFPSGCL LD ALG
Sbjct: 54  GSLSADFDARFVDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLALDFALG 113

Query: 136 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN 195
           GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA+GVDVEN
Sbjct: 114 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVEN 173

Query: 196 LIVCQPDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEVNIGF 243
           LIVCQPD+GEMALEIADRMCRSGA+DLICVDSVSALTPRAE+E  IG 
Sbjct: 174 LIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEVEGEIGM 221


>Medtr2g039670.1 | DNA repair and recombination protein | HC |
           chr2:17387359-17378929 | 20130731
          Length = 424

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 43  FLPRRLPVKFRSLSPLCASKHV----KIQCELEGKINGALSGDLDPRFIDRQKALEAAMN 98
           F    LP +F S + +  +  V      + +   K +G+ SG+       +  AL+ AM+
Sbjct: 15  FFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGE--ENMSKKDLALQQAMD 72

Query: 99  DINNSFGKGSVTRLG-SAGGALVETFPSGCLTLDCALG-GGLPKGRIVEIFGPESSGKTT 156
            I ++FGKGS+  LG +     V    +G   LD ALG  GLPKGR+VEIFGPE+SGKTT
Sbjct: 73  QITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTT 132

Query: 157 LALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCR 216
           LALH IAE QK GG    +DAEHA D + ++++GV+ ENL++ QPD GE AL + D + R
Sbjct: 133 LALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIR 192

Query: 217 SGAVDLICVDSVSALTPRAEIEVNIG 242
           SG++D+I VDSV+AL P+ E++  +G
Sbjct: 193 SGSIDVIVVDSVAALVPKGELDGEMG 218


>Medtr4g126040.1 | DNA repair protein RecA, putative | HC |
           chr4:52380345-52386177 | 20130731
          Length = 417

 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 129/206 (62%), Gaps = 7/206 (3%)

Query: 39  SSSLFLPRRLPVKFRSLSPLCASKHVKIQCELEGKINGALSGDLDPRFIDRQKALEAAMN 98
           + SLF  + + +   S S +    H   +     K +G+ SG+       +  AL  A++
Sbjct: 12  TRSLFAAQGVKLGLSSTSQIL---HFSSKGRRRSKSDGSDSGE--ENMSKKDLALNQALD 66

Query: 99  DINNSFGKGSVTRLGSAGGAL-VETFPSGCLTLDCALG-GGLPKGRIVEIFGPESSGKTT 156
            I ++FGKGS+  LG +     V    +G   LD ALG GGLPKGR+VEI+GPE+SGKTT
Sbjct: 67  QITSAFGKGSIMWLGRSDTPKDVPVVSTGSFALDIALGCGGLPKGRVVEIYGPEASGKTT 126

Query: 157 LALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCR 216
           LALH IAE QK GG  + VDAEHA D   ++++GV+ +NL++ QPD GE AL + D + R
Sbjct: 127 LALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIR 186

Query: 217 SGAVDLICVDSVSALTPRAEIEVNIG 242
           SG++D+I VDSV+AL P+ E++  +G
Sbjct: 187 SGSIDVIVVDSVAALVPKGELDGEMG 212


>Medtr7g090880.1 | DNA repair protein RecA, putative | HC |
           chr7:35807573-35802538 | 20130731
          Length = 391

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)

Query: 83  DPRFIDRQKALEAAMNDINNSFGKGSVTRLGSAGGA-LVETFPSGCLTLDCALG-GGLPK 140
           D +  ++  AL  A++ + + F K S+  L             +G L LD ALG GGLPK
Sbjct: 59  DVKAAEKNNALCLAVSQLASEFSKESMLSLQKFFRVRYANVVSTGSLKLDIALGIGGLPK 118

Query: 141 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 200
           GRIVEI+G E++GKTTLAL  I E QKLGG    +D E A D +  +++GV+ +NL++  
Sbjct: 119 GRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISN 178

Query: 201 PDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIE 238
           PD  E  L + D + +SGAVD+I VDSV+AL P+ E++
Sbjct: 179 PDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELD 216


>Medtr4g062540.3 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 257

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 21/134 (15%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP---AY-------SKALGVDVENLIVCQP--DNGEM-------ALEIADRMCRSG-AV 220
           F P   AY         ++  ++ + I+C P  D  +M        + +  ++ +S   V
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQNILDRIICYPVFDVYQMFDLLHQLKINLRSQIVKSDHQV 206

Query: 221 DLICVDSVSAL-TP 233
            ++ VDS+S+L TP
Sbjct: 207 QVLIVDSISSLITP 220


>Medtr4g062540.5 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 265

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 21/134 (15%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP---AY-------SKALGVDVENLIVCQP--DNGEM-------ALEIADRMCRSG-AV 220
           F P   AY         ++  ++ + I+C P  D  +M        + +  ++ +S   V
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQNILDRIICYPVFDVYQMFDLLHQLKINLRSQIVKSDHQV 206

Query: 221 DLICVDSVSAL-TP 233
            ++ VDS+S+L TP
Sbjct: 207 QVLIVDSISSLITP 220


>Medtr4g062540.2 | DNA repair protein RAD51 | HC |
           chr4:23254009-23249148 | 20130731
          Length = 242

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 21/134 (15%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP---AY-------SKALGVDVENLIVCQP--DNGEM-------ALEIADRMCRSG-AV 220
           F P   AY         ++  ++ + I+C P  D  +M        + +  ++ +S   V
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQNILDRIICYPVFDVYQMFDLLHQLKINLRSQIVKSDHQV 206

Query: 221 DLICVDSVSAL-TP 233
            ++ VDS+S+L TP
Sbjct: 207 QVLIVDSISSLITP 220


>Medtr4g062540.1 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 315

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 21/134 (15%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP---AY-------SKALGVDVENLIVCQP--DNGEM-------ALEIADRMCRSG-AV 220
           F P   AY         ++  ++ + I+C P  D  +M        + +  ++ +S   V
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQNILDRIICYPVFDVYQMFDLLHQLKINLRSQIVKSDHQV 206

Query: 221 DLICVDSVSAL-TP 233
            ++ VDS+S+L TP
Sbjct: 207 QVLIVDSISSLITP 220


>Medtr4g062540.8 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251291 | 20130731
          Length = 207

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP 183
           F P
Sbjct: 147 FSP 149


>Medtr4g062540.6 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 264

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDPA-YSKALGVDVENLIVCQPDNGEMALEIADRM 214
           F P   +  +G   + + V Q D+  +   I DR+
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQADH-RLLQNILDRI 180


>Medtr4g062540.9 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP 183
           F P
Sbjct: 147 FSP 149


>Medtr4g062540.7 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDP 183
           F P
Sbjct: 147 FSP 149


>Medtr4g062540.4 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 322

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 121 ETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 180
             F +GC  +D  LGGGL  G++ E+ GP SSGKT + L + + V K   + + +D  ++
Sbjct: 87  HVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGKTQVCLMSSSTVAKNKCSVIYLDTGNS 146

Query: 181 FDPA-YSKALGVDVENLIVCQPDNGEMALEIADRM 214
           F P   +  +G   + + V Q D+  +   I DR+
Sbjct: 147 FSPQRIAYFVGQSSDYVSVNQADH-RLLQNILDRI 180