Miyakogusa Predicted Gene
- Lj3g3v0420620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0420620.1 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein
OS=Oryza sativa subsp. japonica GN=OJ1439_F07.25 PE=4
SV,46.88,8e-19,SMALL NUCLEAR RIBONUCLEOPROTEIN,NULL; U1 SMALL NUCLEAR
RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR
RIBONUCL,NODE_54419_length_1029_cov_63.899902.path2.1
(229 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 276 8e-75
Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 222 2e-58
Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 174 9e-44
Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 174 9e-44
Medtr3g104670.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 129 2e-30
Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 114 8e-26
Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 111 6e-25
Medtr3g091860.1 | RNA-binding protein with multiple splicing pro... 110 1e-24
Medtr3g091860.2 | RNA-binding protein with multiple splicing pro... 110 1e-24
Medtr3g091860.3 | RNA-binding protein with multiple splicing pro... 91 9e-19
Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC | chr5... 57 1e-08
Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC | chr5... 57 1e-08
Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative... 56 3e-08
Medtr7g108715.1 | small nuclear ribonucleoprotein | HC | chr7:44... 54 1e-07
Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC | chr4... 54 2e-07
Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC | chr4... 54 2e-07
>Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48241678 | 20130731
Length = 229
Score = 276 bits (707), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/219 (65%), Positives = 167/219 (76%), Gaps = 13/219 (5%)
Query: 16 ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRLGPYSSADD 75
+DGAS ARSS+AGYIPSE SLASP P+ S + G G+DYL D++L R+ PY DD
Sbjct: 14 SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69
Query: 76 AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
SRV SE N Y+PL+D L TKRD LGV +P ++ER I K+N + L
Sbjct: 70 TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129
Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKC 186
A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM+ CFVEF + KC
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKC 189
Query: 187 ALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 225
ALTAMEALQGYKFDDKKPDS TLKI+FAHFPFRPP D+G
Sbjct: 190 ALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDDG 228
>Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244267 | 20130731
Length = 215
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/193 (61%), Positives = 141/193 (73%), Gaps = 13/193 (6%)
Query: 16 ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRLGPYSSADD 75
+DGAS ARSS+AGYIPSE SLASP P+ S + G G+DYL D++L R+ PY DD
Sbjct: 14 SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69
Query: 76 AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
SRV SE N Y+PL+D L TKRD LGV +P ++ER I K+N + L
Sbjct: 70 TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129
Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKC 186
A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM+ CFVEF + KC
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKC 189
Query: 187 ALTAMEALQGYKF 199
ALTAMEALQ K+
Sbjct: 190 ALTAMEALQVSKY 202
>Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 115/162 (70%), Gaps = 13/162 (8%)
Query: 16 ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRLGPYSSADD 75
+DGAS ARSS+AGYIPSE SLASP P+ S + G G+DYL D++L R+ PY DD
Sbjct: 14 SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69
Query: 76 AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
SRV SE N Y+PL+D L TKRD LGV +P ++ER I K+N + L
Sbjct: 70 TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129
Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRR 168
A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRR
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRR 171
>Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 115/162 (70%), Gaps = 13/162 (8%)
Query: 16 ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRLGPYSSADD 75
+DGAS ARSS+AGYIPSE SLASP P+ S + G G+DYL D++L R+ PY DD
Sbjct: 14 SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69
Query: 76 AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
SRV SE N Y+PL+D L TKRD LGV +P ++ER I K+N + L
Sbjct: 70 TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129
Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRR 168
A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRR
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRR 171
>Medtr3g104670.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48245200 | 20130731
Length = 173
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 95/144 (65%), Gaps = 13/144 (9%)
Query: 16 ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRLGPYSSADD 75
+DGAS ARSS+AGYIPSE SLASP P+ S + G G+DYL D++L R+ PY DD
Sbjct: 14 SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPY-GVDD 69
Query: 76 AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
SRV SE N Y+PL+D L TKRD LGV +P ++ER I K+N + L
Sbjct: 70 TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129
Query: 127 ADSNVLFVDGLPRDCTRREVGHLF 150
A+SN+LFV GLP+DCTRREVG +
Sbjct: 130 AESNILFVGGLPKDCTRREVGRIL 153
>Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:12131803-12138897 | 20130731
Length = 261
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 18/129 (13%)
Query: 89 GYSPLDDPVLRTKRDTSLGVNPDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGH 148
G+ P DPV R + +L + PD S L+++GLP DCTRREV H
Sbjct: 127 GFQPPMDPVSRHGPEPAL-LPPDASP----------------TLYIEGLPSDCTRREVAH 169
Query: 149 LFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRT 208
+FRPF+GY+++R+V KE + GD ++LCFV+F + CA TA+ ALQGYK D+ P+S
Sbjct: 170 IFRPFVGYREVRLVSKEAKHRGDP-LILCFVDFANPACAATALSALQGYKVDEINPESSH 228
Query: 209 LKIQFAHFP 217
L++QF+ +P
Sbjct: 229 LRLQFSRYP 237
>Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752922-44747555 | 20130731
Length = 252
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 99 RTKRDTSLGVN-PDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYK 157
R RD + G P + RP P+ S+ L+V+GLP D T+REV H+FRPF+GY+
Sbjct: 120 RNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYR 179
Query: 158 DIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFP 217
++R+V KE + G ++LCFV+F + CA TA+ ALQGYK D+ P+S L++QF+ P
Sbjct: 180 EVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSRSP 239
Query: 218 FR 219
R
Sbjct: 240 GR 241
>Medtr3g091860.1 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G ++LCFV+F A
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188
Query: 189 TAMEALQGYKFDDKKPDSRTLKIQFAHFPFR 219
TAM+AL GYKFD+ +S L+ QFA P R
Sbjct: 189 TAMDALHGYKFDELDRNSVNLRFQFARNPGR 219
>Medtr3g091860.2 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G ++LCFV+F A
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188
Query: 189 TAMEALQGYKFDDKKPDSRTLKIQFAHFPFR 219
TAM+AL GYKFD+ +S L+ QFA P R
Sbjct: 189 TAMDALHGYKFDELDRNSVNLRFQFARNPGR 219
>Medtr3g091860.3 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41918988 | 20130731
Length = 243
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G ++LCFV+F A
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188
Query: 189 TAMEALQG 196
TAM+AL G
Sbjct: 189 TAMDALHG 196
>Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752913-44747593 | 20130731
Length = 195
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 99 RTKRDTSLGVN-PDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYK 157
R RD + G P + RP P+ S+ L+V+GLP D T+REV H+FRPF+GY+
Sbjct: 120 RNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYR 179
Query: 158 DIRVVHKEPRR 168
++R+V KE +
Sbjct: 180 EVRLVAKESKH 190
>Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC |
chr5:31637698-31631234 | 20130731
Length = 233
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
+E A +N+LF++ LP + T R + LF + G+K++R++ +P + FV+F+
Sbjct: 152 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 203
Query: 183 DSKCALTAMEALQGYKFDDKKP 204
D + AM+ALQG+K + P
Sbjct: 204 DDGQSSMAMQALQGFKITPQNP 225
>Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC |
chr5:31637698-31631271 | 20130731
Length = 234
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
+E A +N+LF++ LP + T R + LF + G+K++R++ +P + FV+F+
Sbjct: 153 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 204
Query: 183 DSKCALTAMEALQGYKFDDKKP 204
D + AM+ALQG+K + P
Sbjct: 205 DDGQSSMAMQALQGFKITPQNP 226
>Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative |
LC | chr1:24534556-24533368 | 20130731
Length = 279
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
+E A +N+LF++ LP + T R + LF + G+K++R++ +P + FV+F+
Sbjct: 198 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 249
Query: 183 DSKCALTAMEALQGYKFDDKKPDSRTLKIQFA 214
D + AM+ALQG+K + P + I FA
Sbjct: 250 DEGQSSMAMQALQGFKITPQNP----MIINFA 277
>Medtr7g108715.1 | small nuclear ribonucleoprotein | HC |
chr7:44399841-44398655 | 20130731
Length = 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N+LF+ LP + T + LF + G+K++R+V +P + FVE+ D +
Sbjct: 86 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 137
Query: 189 TAMEALQGYKFDDKKP 204
AM+ALQG+K + P
Sbjct: 138 VAMQALQGFKIAPQNP 153
>Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC |
chr4:33189422-33193785 | 20130731
Length = 245
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N+LF+ LP + T + LF + G+K++R+V +P + FVE+ D +
Sbjct: 170 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 221
Query: 189 TAMEALQGYKFDDKKP 204
AM+ALQG+K + P
Sbjct: 222 MAMQALQGFKIAPQNP 237
>Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC |
chr4:33189286-33193785 | 20130731
Length = 244
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
+N+LF+ LP + T + LF + G+K++R+V +P + FVE+ D +
Sbjct: 169 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 220
Query: 189 TAMEALQGYKFDDKKP 204
AM+ALQG+K + P
Sbjct: 221 MAMQALQGFKIAPQNP 236