Miyakogusa Predicted Gene

Lj3g3v0409490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0409490.1 Non Characterized Hit- tr|A5BVG2|A5BVG2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.19,0.00000005,seg,NULL,gene.g45255.t1.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g437490.1 | transmembrane protein, putative | LC | chr2:14...    49   1e-06
Medtr7g104745.1 | hypothetical protein | LC | chr7:42466146-4246...    47   4e-06

>Medtr2g437490.1 | transmembrane protein, putative | LC |
           chr2:14733710-14733099 | 20130731
          Length = 203

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2   RSFLWG-VAGSRKIAWVAWEDICKGIRFGDLGLGSLEWKNKAXXXXXXKWFWRFGREKEA 60
           R FLWG V G  KI+WV WE +C+  R G LG+  +   N +      KW WR      A
Sbjct: 115 REFLWGGVGGGNKISWVKWETVCQSKRNGGLGVKDIRLMNVS---LLAKWRWRLIDGDTA 171

Query: 61  LWNVAFRRKF 70
           LW  A R K+
Sbjct: 172 LWKEALRAKY 181


>Medtr7g104745.1 | hypothetical protein | LC |
           chr7:42466146-42462238 | 20130731
          Length = 787

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 2   RSFLWG-VAGSRKIAWVAWEDICKGIRFGDLGLGSLEWKNKAXXXXXXKWFWRFGREKEA 60
           R FLWG V G RK+ WV W  +C     G LG+ +++  N +      KW WR  +E + 
Sbjct: 643 REFLWGGVGGGRKVCWVKWNKVCHPRNKGGLGVQNVKLVNLS---LLAKWKWRLLQEDQP 699

Query: 61  LWNVAFRRKFFDWEMQAAISEFFTA 85
           LW      K+ D    A+    F A
Sbjct: 700 LWKRVLEDKYGDQSSLASRGMKFIA 724