Miyakogusa Predicted Gene
- Lj3g3v0409470.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0409470.2 Non Characterized Hit- tr|C4J1R7|C4J1R7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.28,0.0000000000007,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; RNA recognition motif,RNA recognition
mot,CUFF.40655.2
(303 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297... 427 e-120
Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422... 328 3e-90
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422... 323 2e-88
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 66 5e-11
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 62 9e-10
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 2e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 61 2e-09
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 2e-09
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 2e-09
Medtr8g081640.3 | RNA recognition motif (RRM) containing protein... 57 2e-08
Medtr8g081640.2 | RNA recognition motif (RRM) containing protein... 57 2e-08
Medtr8g081640.1 | RNA recognition motif (RRM) containing protein... 57 2e-08
Medtr8g081640.4 | RNA recognition motif (RRM) containing protein... 57 2e-08
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 56 4e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 56 4e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 55 1e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 54 1e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 2e-07
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 52 9e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 51 1e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 51 1e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 51 1e-06
>Medtr2g070540.1 | CTC-interacting domain protein | HC |
chr2:29723724-29729859 | 20130731
Length = 298
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/284 (76%), Positives = 236/284 (83%), Gaps = 7/284 (2%)
Query: 20 GSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFL 79
+K+DSKP +SEF++QKLVD+FTKLNPLA+EF PSSY+ + DH QGFN +PN FL
Sbjct: 13 ANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSP--NHDHGRQGFNLITPNHFL 70
Query: 80 VXXXXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVT 139
V KP A+D P LKAQREDSVRRTVYVSDIDQHVT
Sbjct: 71 VNT---KPSANDNNPNNRRRRNNFTQGRRRLNGRS--LKAQREDSVRRTVYVSDIDQHVT 125
Query: 140 EERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLP 199
EERLAALFT CG VIDCRICGDPHSVLRFAFVEFADE+GARAALNL GTVLGYYPVRVLP
Sbjct: 126 EERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLP 185
Query: 200 SKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGD 259
SKTAILPVNPTFLPRSDDEREMC+RTVYCTNIDKK+SQAEVKNFFE SCGEVTR+RLLGD
Sbjct: 186 SKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGD 245
Query: 260 HVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
VHSTRIAFVEFA+AESAI+AL+CSGMLLGTQP+RVSPSKTPVR
Sbjct: 246 QVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVR 289
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
RTVY ++ID+ +++ + F ++CG V R+ GD R AFVEFA A ALN
Sbjct: 210 RTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNC 269
Query: 186 SGTVLGYYPVRVLPSKTAILP 206
SG +LG P+RV PSKT + P
Sbjct: 270 SGMLLGTQPIRVSPSKTPVRP 290
>Medtr3g092550.1 | CTC-interacting domain protein | HC |
chr3:42290596-42284870 | 20130731
Length = 384
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/273 (60%), Positives = 201/273 (73%), Gaps = 5/273 (1%)
Query: 35 MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ---WSPNPFLVXXXXXKPLADD 91
M+ L ++ +KLNP+AEEF+P S H +L G N + N F++ A+
Sbjct: 104 MRDLEELLSKLNPMAEEFVPPSLVTNYH-GYLAAGPNAGFGYPNNNFMLQNNFGNANANA 162
Query: 92 QYPXXXXXXXXXXXXXXXXXXXXXVLKAQ-REDSVRRTVYVSDIDQHVTEERLAALFTTC 150
+ + RE+ +RRTVYVSDIDQ VTEE+LAALF C
Sbjct: 163 TANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNC 222
Query: 151 GSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
G V+DCR+CGDP+S+LRFAFVEF DE GARAALNLSGT+LGYYP+RVLPSKTAI PVNPT
Sbjct: 223 GQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPT 282
Query: 211 FLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVE 270
FLPRS+DEREMC+RT+YCTN+DKK++QA+VK+FFE CGEV R+RLLGD+ HSTRIAFVE
Sbjct: 283 FLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVE 342
Query: 271 FAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
FA+AESAI ALSCSG++LG+ P+RVSPSKTPVR
Sbjct: 343 FAVAESAIAALSCSGVVLGSLPIRVSPSKTPVR 375
>Medtr3g092510.1 | CTC-interacting domain protein | HC |
chr3:42267137-42262435 | 20130731
Length = 376
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/275 (60%), Positives = 200/275 (72%), Gaps = 17/275 (6%)
Query: 35 MQKLVDIFTKLNPLAEEFIPSS------YAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPL 88
M+ L ++ +KLNP+AEEF+P S Y AA GF PN F++
Sbjct: 105 MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPA----AGF--GYPNNFILLNNYAN-- 156
Query: 89 ADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFT 148
A+ Q V +RE+ +RRTVYVSDIDQ VTEE+LA+LF
Sbjct: 157 ANGQ---TNRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFL 213
Query: 149 TCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVN 208
CG V+DCR+CGDP+S+LRFAF+EF DE ARAA++LSGT+LGYYP+RVLPSKTAI PVN
Sbjct: 214 NCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVN 273
Query: 209 PTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAF 268
PTFLPRS+DEREMCSRT+YCTNIDKK++QA+VK+FFE CGEV R+RLLGD+ HSTRIAF
Sbjct: 274 PTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAF 333
Query: 269 VEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
VEFA+AESAI ALSCSG++LG P+RVSPSKTPVR
Sbjct: 334 VEFAVAESAIAALSCSGVILGALPIRVSPSKTPVR 368
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAALN- 184
++YV D+D VT+ +L LF G V+ RIC D L + +V F++ + A A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
L+ T L P+R++ S R R+ + ++ N+D+ + + + F
Sbjct: 85 LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAIDHKALYDTF 132
Query: 245 EISCGEVTRIRLLGDHVH-STRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVS 296
I G + ++ D S FV+F ESA A+ +GMLL +PV V
Sbjct: 133 SI-FGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 117 LKAQREDSVRRTV--------YVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRF 168
LK + E S++ TV Y+ ++D VT+E+L+ LF+ G+V C+I DP + R
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 169 A-FVEFAD-EYGARAALNLSGTVLGYYPVRVLPSK 201
+ FV F+ E RA ++G ++ P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 125 VRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAA 182
V ++YV D+D +VT+ +L LF G V+ R+C D L + +V +++ A A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 183 LN-LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
L+ L+ T L P+R++ S R R+ ++ N+DK + +
Sbjct: 92 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAIDHKALH 139
Query: 242 NFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAESAIIAL-SCSGMLLGTQPVRVSP 297
+ F S G + ++ D ++ FV+F E+A A+ +GMLL + V V P
Sbjct: 140 DTFS-SFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGP 196
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
E+S +T++V ++ V + F CG V+D R D + F VEFA A+
Sbjct: 324 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 383
Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
+AL ++G L VR + + A P N + R S+TV+ DK + +
Sbjct: 384 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 442
Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
E++ F +CGE TR+ + D +S A+++F ++S AL
Sbjct: 443 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 491
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
E+S +T++V ++ V + F CG V+D R D + F VEFA A+
Sbjct: 336 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 395
Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
+AL ++G L VR + + A P N + R S+TV+ DK + +
Sbjct: 396 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 454
Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
E++ F +CGE TR+ + D +S A+++F ++S AL
Sbjct: 455 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 503
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
+D+ +T+ V ++ V + +F CG V+D R D R F +VEF A+
Sbjct: 157 KDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAK 216
Query: 181 AALNLSGTVL--------------GYYPVRVLPSKT-------------------AILPV 207
AL L T L GY P R S + A +
Sbjct: 217 KALKLDSTELLNRRMRVDIAIEKSGYPPCRSNLSSSVHTGGNLQSHPHTVKGVVDASIVE 276
Query: 208 NPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR-I 266
N P + +E + S+T+Y N+ V +++++N F+ CGE+ IRL D +
Sbjct: 277 NKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFK-DCGEIVDIRLHTDREGKFKGH 335
Query: 267 AFVEFAIAESAIIAL 281
A V+FA A++A AL
Sbjct: 336 AHVQFATADAAQKAL 350
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHS--VLRFAFVEFA 174
+ + +DS T++V D+ V++ L +F T SV ++ D + + FV FA
Sbjct: 158 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 217
Query: 175 DEY-GARAALNLSGTVLGYYPVRVLPSKTAILPV--------NPTFLPRSDDEREMCSRT 225
DE RA + G + P+R+ P+ L NP + +E + + T
Sbjct: 218 DESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQ--GGAQNENDPNNTT 275
Query: 226 VYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSC-S 284
++ N+D V+ +K F GE+ +++ R FV+FA SA AL +
Sbjct: 276 IFVGNLDPNVTDEHLKQVF-TQYGELVHVKI----PSGKRCGFVQFADRSSAEEALRVLN 330
Query: 285 GMLLGTQPVRVSPSKTPV 302
G LLG Q VR+S ++P
Sbjct: 331 GTLLGGQNVRLSWGRSPA 348
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
E+S +T++V ++ V + F CG V+D R D + F VEFA A+
Sbjct: 371 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 430
Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
+AL ++G L VR + + A P N + R S+TV+ DK + +
Sbjct: 431 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 489
Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
E++ F +CGE TR+ + D +S A+++F ++S AL
Sbjct: 490 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 538
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
E+S +T++V ++ V + F CG V+D R D + F VEFA A+
Sbjct: 359 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 418
Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
+AL ++G L VR + + A P N + R S+TV+ DK + +
Sbjct: 419 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 477
Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
E++ F +CGE TR+ + D +S A+++F ++S AL
Sbjct: 478 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 526
>Medtr8g081640.3 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
KA +ED +++T+ VS++ +T E+L LF CG+V++C I H FA++E++
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376
Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
A AA+ L+ +G P+ V +K+ LP PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408
>Medtr8g081640.2 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
KA +ED +++T+ VS++ +T E+L LF CG+V++C I H FA++E++
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376
Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
A AA+ L+ +G P+ V +K+ LP PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408
>Medtr8g081640.1 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
KA +ED +++T+ VS++ +T E+L LF CG+V++C I H FA++E++
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376
Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
A AA+ L+ +G P+ V +K+ LP PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408
>Medtr8g081640.4 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236578-35228497 | 20130731
Length = 1047
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
KA +ED +++T+ VS++ +T E+L LF CG+V++C I H FA++E++
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376
Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
A AA+ L+ +G P+ V +K+ LP PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGARAAL-NL 185
VYV +I + T+E L LF G + + D + R F FV F A AA+ L
Sbjct: 210 NVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDER-----EMCSRTVYCTNIDKKVSQAEV 240
+GT + V + + + ER ++ +Y N+D ++ ++
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 241 KNFFEISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIALS-CSGMLLGTQPVRVS 296
K+ F G VT R++ D H HS FV F+ E A AL+ +G L+G +P+ V+
Sbjct: 330 KDLFS-EFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVA 386
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGARAAL-NL 185
VYV +I + T+E L LF G + + D + R F FV F A AA+ L
Sbjct: 210 NVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDER-----EMCSRTVYCTNIDKKVSQAEV 240
+GT + V + + + ER ++ +Y N+D ++ ++
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 241 KNFFEISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIALS-CSGMLLGTQPVRVS 296
K+ F G VT R++ D H HS FV F+ E A AL+ +G L+G +P+ V+
Sbjct: 330 KDLFS-EFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVA 386
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGARAAL-NL 185
VYV ++ + T+E L LF+T G + I D + + F FV F A AA+ L
Sbjct: 106 NVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSR-------TVYCTNIDKKVSQA 238
+GT +VL A R+ E+E R +Y N+D+ ++
Sbjct: 166 NGTTTN--DGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDE 223
Query: 239 EVKNFFEISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIALS-CSGMLLGTQPVRV 295
++K F G +T +++ D H HS FV F+ +E A A++ SG ++G +P+ V
Sbjct: 224 KLKEMFS-EFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYV 281
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 125 VRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAA 182
V ++YV D++ +V + +L LF G V+ R+C D L + +V F + A A
Sbjct: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89
Query: 183 LN-LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
L+ L+ T + +RV+ S R R+ + ++ N+DK + +
Sbjct: 90 LDVLNFTPMNNKSIRVMYSH------------RDPSSRKSGTANIFIKNLDKTIDHKALH 137
Query: 242 NFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAESAIIAL-SCSGMLLGTQPVRVS 296
+ F S G++ ++ D ++ FV+F +SA A+ +GML+ + V V
Sbjct: 138 DTFS-SFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVG 193
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 119 AQREDSVRRTVYVSDIDQHVTEERLAALF------TTCGSVIDCRICGDPHSVLRFAFVE 172
++++D T++V D+ VT+ L F V+ R+ G + FV
Sbjct: 147 SRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKG---YGFVR 203
Query: 173 FADE-YGARAALNLSGTVLGYYPVRVLPS--KTAILPVNP--TFLPRSDD-EREMCSRTV 226
FADE RA + G + P+R+ P+ K P ++ P E + + T+
Sbjct: 204 FADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTI 263
Query: 227 YCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFA---IAESAIIALSC 283
+ N+D V+ ++ F GE+ +++ R FV+F+ AE AI L+
Sbjct: 264 FVGNLDPNVTDDHLRQVF-TQYGELVHVKI----PSGKRCGFVQFSDRSCAEEAIRVLN- 317
Query: 284 SGMLLGTQPVRVSPSKTP 301
G LLG Q VR+S +TP
Sbjct: 318 -GTLLGGQNVRLSWGRTP 334
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 119 AQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSV--IDCRICGDPHSVLRFAFVEFADE 176
+Q V VYV I + +E+ + + F CG++ I+C D A + F E
Sbjct: 212 SQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTE 271
Query: 177 YGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVS 236
A+ AL L G +G +++ P K T R E + +Y ++ +++
Sbjct: 272 AAAKRALALDGADMGGLFLKIQPCKA-------TQATRFTPEMKEGYNRIYVGSLSWEIT 324
Query: 237 QAEVKNFFEISCGEVTRIRLLGDHVHST--RIAFVEFAIAESAIIALSCSGMLLGTQPVR 294
+ E++ FF +C V IRL D A V+F ++S AL+ +L +PVR
Sbjct: 325 EEELRKFFS-NC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVR 382
Query: 295 VS 296
+S
Sbjct: 383 IS 384
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
+RTV+ + TE + F+ G V D R+ D +S ++EF D A+
Sbjct: 201 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 260
Query: 184 NLSGTVLGYYPVRVLPSKTA--ILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
LSG +L PV V PS+ ++ N + R +Y N+ +++A ++
Sbjct: 261 ALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLR 320
Query: 242 NFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML-LGTQPVRVS 296
FE EV ++ L + H FV+FA E A A S +G L + + ++VS
Sbjct: 321 EIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 377
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 213 PRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDH--VHSTRIAFVE 270
P +D ER+ RTV+ + K ++ +V FF G+V +RL+ D S + ++E
Sbjct: 193 PEADPERDQ--RTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIE 249
Query: 271 FAIAESAIIALSCSGMLLGTQPVRVSPSK 299
F A S +A++ SG LL QPV V PS+
Sbjct: 250 FYDAMSVPMAIALSGQLLLGQPVMVKPSE 278
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
+RTV+ + TE + F+ G V D R+ D +S ++EF D A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273
Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
LSG +L PV V PS K + T R +Y N+ ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML-LGTQPVRVS 296
+ FE EV ++ L + H F++FA E A A S +G L + + ++VS
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 210 TFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDH--VHSTRIA 267
T P +D ER+ RTV+ + K ++ +V FF G+V +RL+ D S +
Sbjct: 203 TVEPEADPERD--QRTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVG 259
Query: 268 FVEFAIAESAIIALSCSGMLLGTQPVRVSPSK 299
++EF A S +A++ SG LL QPV V PS+
Sbjct: 260 YIEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 291
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
+RTV+ + TE + F+ G V D R+ D +S ++EF D A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273
Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
LSG +L PV V PS K + T R +Y N+ ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML-LGTQPVRVS 296
+ FE EV ++ L + H F++FA E A A S +G L + + ++VS
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 210 TFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDH--VHSTRIA 267
T P +D ER+ RTV+ + K ++ +V FF G+V +RL+ D S +
Sbjct: 203 TVEPEADPERD--QRTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVG 259
Query: 268 FVEFAIAESAIIALSCSGMLLGTQPVRVSPSK 299
++EF A S +A++ SG LL QPV V PS+
Sbjct: 260 YIEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 291
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
+RTV+ + TE + F+ G V D R+ D +S ++EF D A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273
Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
LSG +L PV V PS K + T R +Y N+ ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML-LGTQPVRVS 296
+ FE EV ++ L + H F++FA E A A S +G L + + ++VS
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 210 TFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDH--VHSTRIA 267
T P +D ER+ RTV+ + K ++ +V FF G+V +RL+ D S +
Sbjct: 203 TVEPEADPERD--QRTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVG 259
Query: 268 FVEFAIAESAIIALSCSGMLLGTQPVRVSPSK 299
++EF A S +A++ SG LL QPV V PS+
Sbjct: 260 YIEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 291