Miyakogusa Predicted Gene

Lj3g3v0409470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0409470.1 Non Characterized Hit- tr|C4J1R7|C4J1R7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.28,0.0000000000009,RNA recognition motif,RNA recognition motif
domain; seg,NULL; RNA-binding domain, RBD,NULL; RRM_6,NU,CUFF.40655.1
         (313 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297...   405   e-113
Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422...   306   2e-83
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422...   300   1e-81
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    61   1e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    60   3e-09
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    59   5e-09
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    59   5e-09
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    59   6e-09
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    59   7e-09
Medtr8g081640.3 | RNA recognition motif (RRM) containing protein...    57   2e-08
Medtr8g081640.2 | RNA recognition motif (RRM) containing protein...    57   2e-08
Medtr8g081640.1 | RNA recognition motif (RRM) containing protein...    57   2e-08
Medtr8g081640.4 | RNA recognition motif (RRM) containing protein...    57   2e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    57   2e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708...    53   4e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-...    50   2e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-...    50   2e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-...    50   2e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-...    50   2e-06

>Medtr2g070540.1 | CTC-interacting domain protein | HC |
           chr2:29723724-29729859 | 20130731
          Length = 298

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/272 (75%), Positives = 224/272 (82%), Gaps = 7/272 (2%)

Query: 20  GSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFL 79
            +K+DSKP  +SEF++QKLVD+FTKLNPLA+EF PSSY+   + DH  QGFN  +PN FL
Sbjct: 13  ANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSP--NHDHGRQGFNLITPNHFL 70

Query: 80  VXXXXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVT 139
           V     KP A+D  P                      LKAQREDSVRRTVYVSDIDQHVT
Sbjct: 71  VNT---KPSANDNNPNNRRRRNNFTQGRRRLNGRS--LKAQREDSVRRTVYVSDIDQHVT 125

Query: 140 EERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLP 199
           EERLAALFT CG VIDCRICGDPHSVLRFAFVEFADE+GARAALNL GTVLGYYPVRVLP
Sbjct: 126 EERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLP 185

Query: 200 SKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGD 259
           SKTAILPVNPTFLPRSDDEREMC+RTVYCTNIDKK+SQAEVKNFFE SCGEVTR+RLLGD
Sbjct: 186 SKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGD 245

Query: 260 HVHSTRIAFVEFAIAESAIIALSCSGMLLGTQ 291
            VHSTRIAFVEFA+AESAI+AL+CSGMLLGTQ
Sbjct: 246 QVHSTRIAFVEFAMAESAIVALNCSGMLLGTQ 277



 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RTVY ++ID+ +++  +   F ++CG V   R+ GD     R AFVEFA    A  ALN 
Sbjct: 210 RTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNC 269

Query: 186 SGTVLGYYPVRVLPSKTAILP 206
           SG +LG  P+RV PSKT + P
Sbjct: 270 SGMLLGTQPIRVSPSKTPVRP 290


>Medtr3g092550.1 | CTC-interacting domain protein | HC |
           chr3:42290596-42284870 | 20130731
          Length = 384

 Score =  306 bits (784), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 189/260 (72%), Gaps = 5/260 (1%)

Query: 35  MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ---WSPNPFLVXXXXXKPLADD 91
           M+ L ++ +KLNP+AEEF+P S     H  +L  G N    +  N F++        A+ 
Sbjct: 104 MRDLEELLSKLNPMAEEFVPPSLVTNYH-GYLAAGPNAGFGYPNNNFMLQNNFGNANANA 162

Query: 92  QYPXXXXXXXXXXXXXXXXXXXXXVLKAQ-REDSVRRTVYVSDIDQHVTEERLAALFTTC 150
                                    +  + RE+ +RRTVYVSDIDQ VTEE+LAALF  C
Sbjct: 163 TANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNC 222

Query: 151 GSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
           G V+DCR+CGDP+S+LRFAFVEF DE GARAALNLSGT+LGYYP+RVLPSKTAI PVNPT
Sbjct: 223 GQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPT 282

Query: 211 FLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVE 270
           FLPRS+DEREMC+RT+YCTN+DKK++QA+VK+FFE  CGEV R+RLLGD+ HSTRIAFVE
Sbjct: 283 FLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVE 342

Query: 271 FAIAESAIIALSCSGMLLGT 290
           FA+AESAI ALSCSG++LG+
Sbjct: 343 FAVAESAIAALSCSGVVLGS 362



 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y +++D+ +T+  +   F + CG V   R+ GD H   R AFVEFA    A AAL+ 
Sbjct: 296 RTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSC 355

Query: 186 SGTVLGYYPVRVLPSKTAI 204
           SG VLG  P+RV PSKT +
Sbjct: 356 SGVVLGSLPIRVSPSKTPV 374


>Medtr3g092510.1 | CTC-interacting domain protein | HC |
           chr3:42267137-42262435 | 20130731
          Length = 376

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 188/261 (72%), Gaps = 17/261 (6%)

Query: 35  MQKLVDIFTKLNPLAEEFIPSS------YAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPL 88
           M+ L ++ +KLNP+AEEF+P S      Y AA        GF    PN F++        
Sbjct: 105 MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPA----AGF--GYPNNFILLNNYAN-- 156

Query: 89  ADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFT 148
           A+ Q                       V   +RE+ +RRTVYVSDIDQ VTEE+LA+LF 
Sbjct: 157 ANGQ---TNRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFL 213

Query: 149 TCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVN 208
            CG V+DCR+CGDP+S+LRFAF+EF DE  ARAA++LSGT+LGYYP+RVLPSKTAI PVN
Sbjct: 214 NCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVN 273

Query: 209 PTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAF 268
           PTFLPRS+DEREMCSRT+YCTNIDKK++QA+VK+FFE  CGEV R+RLLGD+ HSTRIAF
Sbjct: 274 PTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAF 333

Query: 269 VEFAIAESAIIALSCSGMLLG 289
           VEFA+AESAI ALSCSG++LG
Sbjct: 334 VEFAVAESAIAALSCSGVILG 354



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ +T+  +   F + CG V   R+ GD     R AFVEFA    A AAL+ 
Sbjct: 289 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSC 348

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRS 215
           SG +LG  P+RV PSKT   PV     PRS
Sbjct: 349 SGVILGALPIRVSPSKT---PVRARSSPRS 375


>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:13375682-13364027 | 20130731
          Length = 668

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)

Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
           +D+  +T+ V ++   V    +  +F  CG V+D R   D     R F +VEF     A+
Sbjct: 157 KDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAK 216

Query: 181 AALNLSGTVL--------------GYYPVRVLPSKT-------------------AILPV 207
            AL L  T L              GY P R   S +                   A +  
Sbjct: 217 KALKLDSTELLNRRMRVDIAIEKSGYPPCRSNLSSSVHTGGNLQSHPHTVKGVVDASIVE 276

Query: 208 NPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRI- 266
           N    P + +E  + S+T+Y  N+   V +++++N F+  CGE+  IRL  D     +  
Sbjct: 277 NKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFK-DCGEIVDIRLHTDREGKFKGH 335

Query: 267 AFVEFAIAESAIIAL 281
           A V+FA A++A  AL
Sbjct: 336 AHVQFATADAAQKAL 350


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
           chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 18/166 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAALN- 184
           ++YV D+D  VT+ +L  LF   G V+  RIC D      L + +V F++ + A  A++ 
Sbjct: 25  SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+ T L   P+R++ S             R    R+  +  ++  N+D+ +    + + F
Sbjct: 85  LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAIDHKALYDTF 132

Query: 245 EISCGEVTRIRLLGDHVH-STRIAFVEFAIAESAIIAL-SCSGMLL 288
            I  G +   ++  D    S    FV+F   ESA  A+   +GMLL
Sbjct: 133 SI-FGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLL 177



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 117 LKAQREDSVRRTV--------YVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRF 168
           LK + E S++ TV        Y+ ++D  VT+E+L+ LF+  G+V  C+I  DP  + R 
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347

Query: 169 A-FVEFAD-EYGARAALNLSGTVLGYYPVRVLPSK 201
           + FV F+  E   RA   ++G ++   P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382


>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 588

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
           E+S  +T++V ++   V    +   F  CG V+D R   D     + F  VEFA    A+
Sbjct: 324 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 383

Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
           +AL ++G  L    VR  +   + A  P N +        R   S+TV+    DK + + 
Sbjct: 384 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 442

Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
           E++      F  +CGE TR+ +  D    +S   A+++F  ++S   AL
Sbjct: 443 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 491


>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 600

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
           E+S  +T++V ++   V    +   F  CG V+D R   D     + F  VEFA    A+
Sbjct: 336 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 395

Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
           +AL ++G  L    VR  +   + A  P N +        R   S+TV+    DK + + 
Sbjct: 396 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 454

Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
           E++      F  +CGE TR+ +  D    +S   A+++F  ++S   AL
Sbjct: 455 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 503


>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567463-28562229 | 20130731
          Length = 623

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
           E+S  +T++V ++   V    +   F  CG V+D R   D     + F  VEFA    A+
Sbjct: 359 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 418

Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
           +AL ++G  L    VR  +   + A  P N +        R   S+TV+    DK + + 
Sbjct: 419 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 477

Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
           E++      F  +CGE TR+ +  D    +S   A+++F  ++S   AL
Sbjct: 478 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 526


>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 635

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 122 EDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGAR 180
           E+S  +T++V ++   V    +   F  CG V+D R   D     + F  VEFA    A+
Sbjct: 371 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 430

Query: 181 AALNLSGTVLGYYPVR--VLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
           +AL ++G  L    VR  +   + A  P N +        R   S+TV+    DK + + 
Sbjct: 431 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 489

Query: 239 EVK----NFFEISCGEVTRIRLLGD--HVHSTRIAFVEFAIAESAIIAL 281
           E++      F  +CGE TR+ +  D    +S   A+++F  ++S   AL
Sbjct: 490 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 538


>Medtr8g081640.3 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
           KA +ED +++T+ VS++   +T E+L  LF  CG+V++C I    H    FA++E++   
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376

Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
            A AA+ L+   +G  P+ V  +K+  LP  PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPT 407


>Medtr8g081640.2 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
           KA +ED +++T+ VS++   +T E+L  LF  CG+V++C I    H    FA++E++   
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376

Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
            A AA+ L+   +G  P+ V  +K+  LP  PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPT 407


>Medtr8g081640.1 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
           KA +ED +++T+ VS++   +T E+L  LF  CG+V++C I    H    FA++E++   
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376

Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
            A AA+ L+   +G  P+ V  +K+  LP  PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPT 407


>Medtr8g081640.4 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236578-35228497 | 20130731
          Length = 1047

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 118 KAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEY 177
           KA +ED +++T+ VS++   +T E+L  LF  CG+V++C I    H    FA++E++   
Sbjct: 321 KANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPE 376

Query: 178 GARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
            A AA+ L+   +G  P+ V  +K+  LP  PT
Sbjct: 377 EAAAAMALNNIDVGGRPLNVEMAKS--LPPKPT 407


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
           chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 125 VRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAA 182
           V  ++YV D+D +VT+ +L  LF   G V+  R+C D      L + +V +++   A  A
Sbjct: 32  VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91

Query: 183 LN-LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
           L+ L+ T L   P+R++ S             R    R+     ++  N+DK +    + 
Sbjct: 92  LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAIDHKALH 139

Query: 242 NFFEISCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLL 288
           + F  S G +   ++  D    S    FV+F   E+A  A+   +GMLL
Sbjct: 140 DTFS-SFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLL 187


>Medtr1g019150.1 | polyadenylate-binding protein | HC |
           chr1:5708406-5713691 | 20130731
          Length = 647

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 125 VRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAA 182
           V  ++YV D++ +V + +L  LF   G V+  R+C D      L + +V F +   A  A
Sbjct: 30  VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89

Query: 183 LN-LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
           L+ L+ T +    +RV+ S             R    R+  +  ++  N+DK +    + 
Sbjct: 90  LDVLNFTPMNNKSIRVMYSH------------RDPSSRKSGTANIFIKNLDKTIDHKALH 137

Query: 242 NFFEISCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLL 288
           + F  S G++   ++  D    S    FV+F   +SA  A+   +GML+
Sbjct: 138 DTFS-SFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLI 185


>Medtr8g092550.1 | CC1-like splicing factor | HC |
           chr8:38688579-38694751 | 20130731
          Length = 567

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
           +RTV+   +    TE  +   F+  G V D R+  D +S       ++EF D      A+
Sbjct: 201 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 260

Query: 184 NLSGTVLGYYPVRVLPSKTA--ILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
            LSG +L   PV V PS+    ++  N +             R +Y  N+   +++A ++
Sbjct: 261 ALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLR 320

Query: 242 NFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML 287
             FE     EV ++ L  +  H     FV+FA  E A  A S +G L
Sbjct: 321 EIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKL 367


>Medtr3g095230.1 | CC1-like splicing factor | LC |
           chr3:43513030-43521003 | 20130731
          Length = 587

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
           +RTV+   +    TE  +   F+  G V D R+  D +S       ++EF D      A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273

Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
            LSG +L   PV V PS   K  +     T             R +Y  N+   ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333

Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML 287
           +  FE     EV ++ L  +  H     F++FA  E A  A S +G L
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKL 381


>Medtr3g095230.2 | CC1-like splicing factor | LC |
           chr3:43513031-43520987 | 20130731
          Length = 576

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
           +RTV+   +    TE  +   F+  G V D R+  D +S       ++EF D      A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273

Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
            LSG +L   PV V PS   K  +     T             R +Y  N+   ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333

Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML 287
           +  FE     EV ++ L  +  H     F++FA  E A  A S +G L
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKL 381


>Medtr3g095230.3 | CC1-like splicing factor | LC |
           chr3:43513031-43520279 | 20130731
          Length = 576

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
           +RTV+   +    TE  +   F+  G V D R+  D +S       ++EF D      A+
Sbjct: 214 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 273

Query: 184 NLSGTVLGYYPVRVLPS---KTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV 240
            LSG +L   PV V PS   K  +     T             R +Y  N+   ++++++
Sbjct: 274 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333

Query: 241 KNFFE-ISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGML 287
           +  FE     EV ++ L  +  H     F++FA  E A  A S +G L
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKL 381