Miyakogusa Predicted Gene

Lj3g3v0369360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0369360.2 Non Characterized Hit- tr|A1ZWU4|A1ZWU4_9BACT
ProFAR isomerase associated, putative OS=Microscilla m,41.03,9e-19,no
description,ProFAR isomerase-like; ASCH,ASCH domain; PUA
domain-like,PUA-like domain,CUFF.40580.2
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g099125.1 | RNA-binding ASCH domain protein | HC | chr2:42...   410   e-115
Medtr2g027210.1 | hypothetical protein | LC | chr2:9933630-99277...    78   1e-14

>Medtr2g099125.1 | RNA-binding ASCH domain protein | HC |
           chr2:42499656-42495967 | 20130731
          Length = 387

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/273 (72%), Positives = 228/273 (83%), Gaps = 4/273 (1%)

Query: 6   LLSLYWAFSFLVKFNSTMLCLMKLLPADGLKTIEGRCARGKHNRIEVGNLILFNESLVFE 65
           +++++ + SF +         +K    DGLKTIEGRCA GK+ RIE+GN IL N+SLVFE
Sbjct: 119 IVNVFKSVSFQIHVQEPFFTQLK----DGLKTIEGRCATGKYTRIELGNRILLNKSLVFE 174

Query: 66  VQGVRRYASFFDMLEAESLEKVLPGVESVEEGVKVYRRFFTEEKERENGVLAIIFSKPAL 125
           VQGVR + SFFDML  ESL +VLPG+ESVEEGVK+YRRF+TE+ E+ NGVLAI  SK  +
Sbjct: 175 VQGVRWHPSFFDMLTTESLGEVLPGIESVEEGVKIYRRFYTEQMEQTNGVLAITVSKLPV 234

Query: 126 QPYISLASLFSGLKYEGVQGLLGIIHTRGTVPNALPPPRSSLLASFNLPCNPNEISLSTG 185
           QPY SLASLFSGL YEGVQGLLG++HT GTVPNALPPPRS+LLASFN+PCN +E +L+ G
Sbjct: 235 QPYTSLASLFSGLSYEGVQGLLGLMHTTGTVPNALPPPRSTLLASFNIPCNLSENALTLG 294

Query: 186 ARALAKHAFRSSSGYWGSLDGNDSNKNRLAMNVINHLITHCCWLNIHIVPPHGGVFEIRV 245
           ARALAKH  RSSSGYWGSL GNDSNKNRLA++VIN+LI  CCW+NIH V PHG VFEIRV
Sbjct: 295 ARALAKHGCRSSSGYWGSLVGNDSNKNRLAVDVINNLIAQCCWMNIHTVAPHGVVFEIRV 354

Query: 246 AEGYGARWTEDGSKFIGFLEPYMQDGHSKGWKH 278
           A+GYGARWTEDGSKFIGFLEPYMQDGHSKGWKH
Sbjct: 355 ADGYGARWTEDGSKFIGFLEPYMQDGHSKGWKH 387


>Medtr2g027210.1 | hypothetical protein | LC | chr2:9933630-9927709
           | 20130731
          Length = 87

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 47/82 (57%), Gaps = 26/82 (31%)

Query: 181 SLSTGARALAKHAFRSSSGYWGSLDGNDSNKNRLAMNVINHLITHCCWLNIHIVPPHGGV 240
           +L+ GARAL KHA RSSSGYWGSL GN                          + PHG V
Sbjct: 18  ALTHGARALTKHACRSSSGYWGSLVGN--------------------------ITPHGVV 51

Query: 241 FEIRVAEGYGARWTEDGSKFIG 262
            +IRVA+GYGARW+EDGSK  G
Sbjct: 52  IQIRVADGYGARWSEDGSKVRG 73