Miyakogusa Predicted Gene

Lj3g3v0339010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0339010.1 Non Characterized Hit- tr|D5A923|D5A923_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,34.67,3e-18,seg,NULL,CUFF.40547.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g099440.1 | transmembrane protein, putative | HC | chr2:42...   193   6e-50

>Medtr2g099440.1 | transmembrane protein, putative | HC |
           chr2:42627086-42628220 | 20130731
          Length = 165

 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 120/165 (72%), Gaps = 8/165 (4%)

Query: 1   MGLGASKRVNNSLRNSSQFNSACDSAFTHCLSLTQHAYDGVLPYQLKTASDHIHTLLLSD 60
           MG  ASKRVN + + SS+FNSAC++ FTHCLSLTQH ++GVLPYQLKTASD IHTLL   
Sbjct: 1   MGCSASKRVNTTFQTSSEFNSACETTFTHCLSLTQHTFEGVLPYQLKTASDQIHTLL--- 57

Query: 61  TNPHPLIHKWVATPPDRSQVDSALRRV----NHRGETLGSAPFKDWAHELYTDAVVAGAG 116
           TN HPLIH WV +PPDR+QVDSALRRV    ++R   L    FK+WA  LYTDAV+A AG
Sbjct: 58  TN-HPLIHNWVPSPPDRTQVDSALRRVLRPDHNRDSVLRLPVFKEWARCLYTDAVLASAG 116

Query: 117 KALMLRXXXXXXXXXXXXXLARPAPVVIGSFVGAYSLGVGISIFL 161
           KAL++R             +A+  PV++G FVGAYSLGV +SIFL
Sbjct: 117 KALIVRVPVGVAGIVGIGTVAKSGPVLLGGFVGAYSLGVALSIFL 161