Miyakogusa Predicted Gene

Lj3g3v0337760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0337760.1 Non Characterized Hit- tr|D8QUQ0|D8QUQ0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,41.53,3e-19,seg,NULL; Tim17,Mitochondrial inner membrane
translocase subunit Tim17/Tim22/Tim23/peroxisomal prote,CUFF.40637.1
         (188 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g099550.1 | import inner membrane translocase subunit TIM2...   243   7e-65
Medtr8g018780.1 | import inner membrane translocase subunit TIM2...   205   2e-53
Medtr1g081230.1 | import inner membrane translocase subunit TIM2...   160   6e-40

>Medtr2g099550.1 | import inner membrane translocase subunit TIM22 |
           HC | chr2:42679671-42680748 | 20130731
          Length = 188

 Score =  243 bits (620), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 134/188 (71%)

Query: 1   MAYQTPDHESNSDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENL 60
           MA+ +PDHESNSDSN P RLYNPY+DLEVPIRNLYQLPTSPE+LF+EEA+RK RSWGE L
Sbjct: 1   MAFHSPDHESNSDSNPPKRLYNPYQDLEVPIRNLYQLPTSPEHLFIEEAQRKHRSWGETL 60

Query: 61  TFYTXXXXXXXXXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGL 120
           TFYT                    KSFE GD+ KLR+N+ILNSSGHAGR+WGNRLGVIGL
Sbjct: 61  TFYTGCGYLGGAIGGAGVGFVEAVKSFEKGDTNKLRLNKILNSSGHAGRTWGNRLGVIGL 120

Query: 121 LYAGIESGIEAARDTDDVWNSVAAGLGTGALYXXXXXXXXXXXXXXXXXXXXXXXXXXKQ 180
           L+AGIESGI AARDTDDV+NSVAAGLGTGALY                          KQ
Sbjct: 121 LFAGIESGITAARDTDDVFNSVAAGLGTGALYRAARGVRSAAVAGAVGGVVAGVAIAGKQ 180

Query: 181 ALKRYVPI 188
           ALKRYVPI
Sbjct: 181 ALKRYVPI 188


>Medtr8g018780.1 | import inner membrane translocase subunit TIM22 |
           HC | chr8:6494311-6493382 | 20130731
          Length = 182

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 112/141 (79%)

Query: 12  SDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTXXXXXXX 71
           SD +  TR YNPYKDLEVPI+NLY+LPTSPEYLF EEA+RKRRSWGENLTFYT       
Sbjct: 6   SDQDPQTRFYNPYKDLEVPIQNLYKLPTSPEYLFDEEAKRKRRSWGENLTFYTGCGYLGG 65

Query: 72  XXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYAGIESGIEA 131
                        +SFE+ D+ KLRVNRILN+SGH+GR+WGNR+G+IGLLYAGIESGIEA
Sbjct: 66  SIAGAGVGLVEGIRSFESTDTAKLRVNRILNASGHSGRTWGNRVGIIGLLYAGIESGIEA 125

Query: 132 ARDTDDVWNSVAAGLGTGALY 152
            RD DDVWNSVAAGLGTGA+Y
Sbjct: 126 VRDVDDVWNSVAAGLGTGAVY 146


>Medtr1g081230.1 | import inner membrane translocase subunit TIM22 |
           HC | chr1:36147123-36147680 | 20130731
          Length = 185

 Score =  160 bits (405), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 7   DHESNSDSNTPTRLYNPYKDLE-VPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTX 65
           D  +N   +  TRLY+PY+ L  VPI  LY LPTSPE+LF E+  RK RSWGEN+ +YT 
Sbjct: 3   DSSTNPKDHQNTRLYHPYQHLNNVPIDKLYNLPTSPEHLFQEDIIRKHRSWGENVQYYTG 62

Query: 66  XXXXXXXXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYAGI 125
                              +  E G+SVKLRVNR+LNS G  GR  GN LGV+GL++AG+
Sbjct: 63  TGYLSGAIIGGARGTVQGLREAEAGESVKLRVNRVLNSGGQGGRRLGNSLGVLGLIFAGL 122

Query: 126 ESGIEAARDTDDVWNSVAAGLGTGALYXXXXXXXXXXXXXXXXXXXXXXXXXXKQALKRY 185
           ESG+   RDTDD+ NS  AGLGTGA+Y                          +QALKRY
Sbjct: 123 ESGMTYFRDTDDLVNSAVAGLGTGAIYKAAAGPRSAAIAGAVGGIVAAVAVAGRQALKRY 182

Query: 186 VPI 188
           VPI
Sbjct: 183 VPI 185