Miyakogusa Predicted Gene
- Lj3g3v0311080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0311080.1 Non Characterized Hit- tr|B9S0S2|B9S0S2_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.51,5e-19,LEA_2,Late embryogenesis abundant protein, LEA-14;
seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NA,CUFF.40505.1
(256 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g100060.1 | late embryogenesis abundant protein, putative ... 229 1e-60
Medtr8g016370.1 | chaperonin CPN60-like protein | HC | chr8:5524... 160 9e-40
Medtr3g104460.1 | chaperonin CPN60-like protein | HC | chr3:4810... 139 2e-33
Medtr3g063310.1 | late embryogenesis abundant hydroxyproline-ric... 67 2e-11
Medtr5g076170.1 | late embryogenesis abundant hydroxyproline-ric... 64 1e-10
Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-ric... 61 9e-10
Medtr1g077560.1 | late embryogenesis abundant hydroxyproline-ric... 58 7e-09
Medtr3g078800.1 | late embryogenesis abundant hydroxyproline-ric... 57 2e-08
Medtr2g012550.1 | late embryogenesis abundant protein | LC | chr... 55 8e-08
>Medtr2g100060.1 | late embryogenesis abundant protein, putative |
HC | chr2:42954573-42953147 | 20130731
Length = 260
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 147/261 (56%), Gaps = 7/261 (2%)
Query: 1 MTDRVYPSXXXXXXXXXXXXXXXXXX----XXXXQLYGANRPAYRPQPLHXXXXXXXXXX 56
M DRVYP+ QLYGA RP YRPQP H
Sbjct: 1 MADRVYPAAKPITNGNGNGNGVSAANPSFPATKAQLYGATRPTYRPQPHHRRTRRRCCCT 60
Query: 57 XXXWXXXXXXXXXXXXGGAGVAFYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTV 116
W G G AFYL+YRPH P+F+V KF++ +
Sbjct: 61 FFFWFFLILLILLLLLGVTGTAFYLIYRPHRPSFTVTSLKLSYLNLTSSSTLNSKFNVNI 120
Query: 117 AATNPNKKNIAFSYLPTSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXX 176
A NPNK +I F Y PT+ITILS ++++G+GTIP+F HGKKNTTLLKSSISS+G
Sbjct: 121 TAKNPNK-HITFVYQPTTITILSNNINIGEGTIPSFKHGKKNTTLLKSSISSTGLALESE 179
Query: 177 XXXXXXXXXXXXNGLPLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPT--GKKPAT 234
NGL LKVKLDTKVKA MGK+KTP VGIRV+CDG+RV +P KKP T
Sbjct: 180 ASTELKKNMKSKNGLALKVKLDTKVKAKMGKMKTPNVGIRVTCDGVRVHVPVVGSKKPVT 239
Query: 235 ASTSNAKCNVDVRFKIWKWTV 255
ASTSN KC+VDVRFKIWKWTV
Sbjct: 240 ASTSNVKCDVDVRFKIWKWTV 260
>Medtr8g016370.1 | chaperonin CPN60-like protein | HC |
chr8:5524773-5525875 | 20130731
Length = 226
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 118/226 (52%), Gaps = 32/226 (14%)
Query: 31 QLYGANRPAYRPQPLHXXXXXXXXXXXXXWXXXXXXXXXXXXGGAGVAFYLLYRPHHPTF 90
Q+YGA RP YRPQ W G AG Y LY P P+F
Sbjct: 33 QIYGATRPTYRPQTHRHRNNRNWCCTICCWLLLILIFVLILLGVAGTVVYFLYHPQRPSF 92
Query: 91 SVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTSITILSGDVDVGDGTIP 150
+V +FDLT++ TNPN+K I FSY P S+++L+G++DVGDG IP
Sbjct: 93 TVTSLKLTSS----------EFDLTLSTTNPNEK-ITFSYQPISVSLLAGELDVGDGVIP 141
Query: 151 TFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPLKVKLDTKVKATMGKLKT 210
+F HG KNTT+LK+ + L LK+K++TKV+A M KT
Sbjct: 142 SFEHGTKNTTMLKALVERKS---------------VKRKSLELKMKMETKVEAKMWVFKT 186
Query: 211 PRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWTVG 256
P VGI V CDGI V G+K +T++ KC VDVRFK+WKWT+G
Sbjct: 187 PHVGINVLCDGIDV---AGEK---VTTADEKCAVDVRFKVWKWTLG 226
>Medtr3g104460.1 | chaperonin CPN60-like protein | HC |
chr3:48106262-48107534 | 20130731
Length = 260
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 31 QLYGANRPAYRPQPLHXXXXXXXXXXXXX--WXXXXXXXXXXXXGGAGVAFYLLYRPHHP 88
QLY NR YRPQ + W G FY+LY PH P
Sbjct: 32 QLYNPNRQVYRPQQYNRRRRSNRSLCCCCCFWTILTVLAAAFLVAIVGAVFYVLYHPHQP 91
Query: 89 TFSVXXXXXXXXXXXXXXXX----XXKFDLTVAATNPNKKNIAFSYLPTSITILSGDVDV 144
FS+ F+LT+ A NPN ++ F Y P ++T S V +
Sbjct: 92 QFSITNLRIAKMNLKTPADSPSHLTTLFNLTLIAKNPNN-HLVFFYEPFTVTAFSDSVQI 150
Query: 145 GDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPLKVKLDTKVKAT 204
G+G++P F GK N T L+S +S+S + G P+ +++DTKVK
Sbjct: 151 GNGSLPAFDSGKNNQTSLRSVLSNS-QDLDTESLASLRSGLKKKRGFPVTIQMDTKVKMK 209
Query: 205 MGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 254
M LK+ +VGIRV+C+GIR T+P GK P+ AS +++C VD+R KIWK++
Sbjct: 210 MEWLKSKKVGIRVTCEGIRGTVPAGKSPSVASVIDSECKVDLRIKIWKFS 259
>Medtr3g063310.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr3:28678557-28679754 | 20130731
Length = 252
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 78 AFYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTS-IT 136
A YL +RP P +SV F++TV A NPNKK I Y+ S I+
Sbjct: 86 ALYLAFRPKLPKYSVDRLRITQFNLSDDNSLFVTFNVTVTARNPNKK-IGIYYVSGSHIS 144
Query: 137 ILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPLKVK 196
+ + +G++P F+ G +NTT+L ++ + N +PL +K
Sbjct: 145 AWYKETGLCEGSLPKFYQGHRNTTVLNLPLTGQTQDATGLFNTLQQQLQEAGN-IPLDIK 203
Query: 197 LDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRF 248
++ V+ +GKLK RV RV C + + + S S+++C +R
Sbjct: 204 VNQNVRVKLGKLKIFRVKFRVRCS---LQVDSLGADNDISISDSRCKFRLRL 252
>Medtr5g076170.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein, putative | HC | chr5:32436731-32437833 |
20130731
Length = 263
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 79 FYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTS-ITI 137
+L++RP P +SV F+LT+ A NPNKK I Y S I+
Sbjct: 98 LFLVFRPKIPKYSVDELRVTQFDLSNNNSLAVTFNLTITARNPNKK-IGIDYRGGSRISA 156
Query: 138 LSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNG-LPLKVK 196
D + +G++P F+ G KN T+L SI +G G +PLK+
Sbjct: 157 WYIDTKLCEGSLPKFYQGHKNVTVL--SIPLTGQTQNATGLSSSLQQQFQSEGSVPLKLN 214
Query: 197 LDTKVKATMGKLKTPRVGIRVSC 219
+ V+ +GKLK P++ RV C
Sbjct: 215 VKQPVRIKLGKLKLPKINFRVRC 237
>Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr5:38059404-38058037 | 20130731
Length = 255
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 73 GGAGVAFYLLYRPHHPTFSVXXXXXX---XXXXXXXXXXXXKFDLTVAATNPNKKNIAFS 129
G A FYL++RP P +++ +FD+TV A NPN K I S
Sbjct: 82 GIAAGIFYLVFRPKAPNYTIENITIRGINITSPSSTTGISPEFDVTVKADNPNDK-IGIS 140
Query: 130 YLP-TSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXX 188
Y +S I D+ + +G +P+F+ N T+ K+ + +G +
Sbjct: 141 YEKDSSAEIFYKDMRLCNGILPSFYQPSNNVTVFKTMLKGNGVKMSSEDQRALVKAQTKQ 200
Query: 189 NGLPLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRF 248
+ L VKL VK +G +KT ++ ++V CD L K A A + C R
Sbjct: 201 E-VQLMVKLRAPVKIKVGSVKTWKITVKVDCD-----LMVDKLTANAKIVSRSCT--FRV 252
Query: 249 KIW 251
+W
Sbjct: 253 DLW 255
>Medtr1g077560.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr1:34616049-34617274 | 20130731
Length = 250
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 78 AFYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTSITI 137
A YL+++P P +SV KFD+ + ATNPNKK + +++
Sbjct: 85 ALYLIFKPKLPNYSVDTLRISDLRLNFDLSLYAKFDVKITATNPNKKIGIYYEKGGKLSV 144
Query: 138 LSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPLKVKL 197
L + + +G++P F+ G +N T+L ++S +G +PL + +
Sbjct: 145 LYTNTKLCEGSLPKFYQGHQNKTVL--NVSLTGQVQSGNTLMAALQQQQQTGRIPLDLNI 202
Query: 198 DTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRF 248
+ G+LK +V + C + +L + S + CN ++
Sbjct: 203 HAPIAIKFGRLKLKKVKVLGRCQLVVDSLSSNN---LVSIKASNCNFKLKL 250
>Medtr3g078800.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein, putative | HC | chr3:35573766-35574929 |
20130731
Length = 265
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 8/171 (4%)
Query: 74 GAGVAFYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPT 133
AGV FYL+ RP P +++ +FD++V A N NKK + +
Sbjct: 84 AAGV-FYLIVRPEAPKYAIDRVSVKGMNLTSLSTISPEFDVSVKADNGNKKIGIYYESDS 142
Query: 134 SITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPL 193
S+ + V + G +P F+ N T+ ++ + +G E +PL
Sbjct: 143 SVEMFYRGVSLCKGVLPAFYQPSNNVTVFQTVLKGNGIE-LVRSDQRALVNAVTKGSVPL 201
Query: 194 KVKLDTKVKATMGKL-KTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCN 243
+KL VK +G + KT +V ++V CD L + A A + C+
Sbjct: 202 TLKLRAPVKIKVGSVKKTWKVRVKVDCD-----LTVDQLTAQAKIVDRDCS 247
>Medtr2g012550.1 | late embryogenesis abundant protein | LC |
chr2:3133124-3131208 | 20130731
Length = 265
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 15/181 (8%)
Query: 73 GGAGVAFYLLYRPHHPTFSVXXXXXXXXXX---XXXXXXXXKFDLTVAATNPNKKNIAFS 129
G A YL+ RP +S+ KFDLTV A+NPN K F
Sbjct: 92 GIATGTLYLILRPKALKYSIQDINIKGMNTTWPSSEATILPKFDLTVRASNPNDKIEIFY 151
Query: 130 YLPTSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXN 189
S I +V + G +P F+ N T+LK+ + G +
Sbjct: 152 EKDNSAEIFYNNVKLCKGVLPEFYQPSNNVTVLKTVL--EGIKLGREDQKALVEVQTEEQ 209
Query: 190 GLPLKVKLDTKVKATMGKLKTPRVGIRVSC----DGIRVTLPTGKKPATASTSNAKCNVD 245
+ L KL + VK +G +KT ++ I V C DG+R + P S++ K V+
Sbjct: 210 EVLLITKLRSYVKIKVGSVKTWKMAINVDCGVTLDGLR------ENPEIVSSNCDKFRVN 263
Query: 246 V 246
+
Sbjct: 264 I 264