Miyakogusa Predicted Gene

Lj3g3v0306960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0306960.1 Non Characterized Hit- tr|I3SZR7|I3SZR7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.18,0,no
description,Coproporphyrinogen III oxidase, aerobic;
Coprogen_oxidas,Coproporphyrinogen III
oxida,NODE_32640_length_892_cov_85.319504.path2.1
         (275 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g098800.1 | coproporphyrinogen III oxidase | HC | chr5:432...   396   e-110

>Medtr5g098800.1 | coproporphyrinogen III oxidase | HC |
           chr5:43267396-43273287 | 20130731
          Length = 399

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/274 (76%), Positives = 223/274 (81%), Gaps = 15/274 (5%)

Query: 11  VSSPSYAI-PLFXXXXXXXXXXXXX-----KFLTKQRWKTPLIETKTMRSKKSVVRATVS 64
           +S+PSY+I P F                  K LT Q  KT    T +   ++ + +ATVS
Sbjct: 7   ISAPSYSITPFFTFTSSKSTQISHISHTPPKSLTTQTRKT----TSSHHFQRLITKATVS 62

Query: 65  IEKETPEAERPETFLRGGDAATAAESLSVRARFEKMIREAQDSVCDAIEAADGGGKFKED 124
           IEKETPE+ERP+TFLRG D   A  S SVRARFEKMIREAQD VC+AIE ADGGGKFKED
Sbjct: 63  IEKETPESERPDTFLRGVDNDGATAS-SVRARFEKMIREAQDKVCNAIEQADGGGKFKED 121

Query: 125 VWSRPGGGGGISRVLQDGVVWEKAGVNVSVVYGVMPPDAYRAAKG----SADQKPGPVPF 180
           VWSRPGGGGGISRVLQDG VWEKAGVNVSVVYG MPPDAYRAAKG    S+DQKPGP+PF
Sbjct: 122 VWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGQMPPDAYRAAKGAAAASSDQKPGPIPF 181

Query: 181 FAAGISSVLHPKNPHAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVK 240
           FAAGISSVLHPKNP APTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVK
Sbjct: 182 FAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVK 241

Query: 241 HFHSTQKRACDKFDPTFYPRFKKWCDDYFYIKHR 274
           HFHS QK+ACDKFDPTFYPRFKKWCDDYFYIKHR
Sbjct: 242 HFHSVQKQACDKFDPTFYPRFKKWCDDYFYIKHR 275