Miyakogusa Predicted Gene
- Lj3g3v0300690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0300690.1 Non Characterized Hit- tr|I1LNV0|I1LNV0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,50.54,8e-17,seg,NULL,CUFF.40480.1
(223 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g050445.1 | SNF2 family amine-terminal protein | HC | chr7... 72 5e-13
Medtr7g029525.1 | SNF2 family amine-terminal protein | LC | chr7... 69 4e-12
Medtr7g450820.1 | SNF2 family amine-terminal protein | LC | chr7... 65 5e-11
Medtr4g088650.1 | SNF2 family amine-terminal protein | LC | chr4... 64 1e-10
Medtr7g450780.1 | SNF2 family amine-terminal protein | LC | chr7... 58 9e-09
Medtr1g081750.1 | chromatin remodeling complex subunit | LC | ch... 50 1e-06
>Medtr7g050445.1 | SNF2 family amine-terminal protein | HC |
chr7:16825131-16820145 | 20130731
Length = 1303
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 114 DDDNPQVDTRSPAYG-EKPPLKWNIKEAEPLKKSASEQELDTLWAEMDFQLILEEINSPV 172
+DD DTRSP E PP W++K+ E ++K+ E E + LW +MD L E S +
Sbjct: 556 NDDWRDRDTRSPPVCVETPPQIWSLKKVEEVQKTKEELEQEPLWDQMDTALRESEAESMI 615
Query: 173 DIIGNNEGRENQTFICKHDFRIDDEMGEICRKCSWVANEIKYV 215
+G N+ R N + +C+HD DD++G CR C V EIKYV
Sbjct: 616 GNLGTNDMR-NPSTLCEHDTCFDDQIGVYCRWCGVVVTEIKYV 657
>Medtr7g029525.1 | SNF2 family amine-terminal protein | LC |
chr7:10600743-10605174 | 20130731
Length = 1324
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 104 KGDRNGFEEHDDDNPQVDTR-SPAYGEKPPLKWNIKEAEPLKKSASEQELDTLWAEMDFQ 162
K D FE +D + DT+ P E PP W++K+ E ++K+ E+E + LW E+D
Sbjct: 573 KNDSTLFEFEEDGVDRQDTQPQPVSVETPPSIWSLKKVEKVQKTMEEEENEVLWDELDTV 632
Query: 163 LILEEINSPVDIIGNNEGRE----NQTFICKHDFRIDDEMGEICRKCSWVANEIKYVWPP 218
L + S + +G NE + + C+HD +D+E+G C+ C V EIKY+ P
Sbjct: 633 LRESDAVSMIGNLGTNEATNIKSGSPSSRCEHDTFLDEEIGVYCKLCGVVITEIKYISPL 692
Query: 219 VV 220
VV
Sbjct: 693 VV 694
>Medtr7g450820.1 | SNF2 family amine-terminal protein | LC |
chr7:16993181-16988673 | 20130731
Length = 1239
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 46 RVCKGRINTSNHEKKARVDKRFGNKDGHHRVHTMPLKRKEQQXXXXXXXXXXGKQKETKG 105
R KGR + N EKK D N + V + RKE + ++
Sbjct: 430 RDYKGRADICNGEKKESTD----NNGLNQSVKSTHFTRKELRSLELLVKCYWERKNFMNN 485
Query: 106 DRNGFEEHDDDNPQVDTRSPAYGEKPPLK--WNIKEAEPLKKSASEQELDTLWAEMDFQL 163
D E +DD Q TR P + P + W++K+ + ++K+ E+E + LW E D
Sbjct: 486 DSIVLEVNDDGVDQHHTRPPPVSVETPRERIWSLKKVDIVQKTKEEEEEELLWDEFDTAS 545
Query: 164 ILEEINSPVDIIGNNEGRENQTFICKHDFRIDDEMGEICRKCSWVANEIKYVWPPV 219
S + +G N G +F C+HD +D+E+G C+ C V EIKY+ PPV
Sbjct: 546 RESNAESMIGNLGENGG---PSFHCEHDTFLDEEIGLFCKLCHEVVTEIKYISPPV 598
>Medtr4g088650.1 | SNF2 family amine-terminal protein | LC |
chr4:35262164-35266682 | 20130731
Length = 1218
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 46 RVCKGRINTSNHEKKARVDKRFGNKDGHHRVHTMPLKRKEQQXXXXXXXXXXGKQKETKG 105
R KGR N N EKK +D N+ V + RKE + ++
Sbjct: 441 RDYKGRANICNGEKKESIDTNGLNQS----VKSTHFTRKELRSLELLVKCYWERKNTINN 496
Query: 106 DRNGFEEHDDDNPQVDTRSPAYGEKPPLK--WNIKEAEPLKKSASEQELDTLWAEMDFQL 163
D E++DD Q DT P + P + W++K+ E ++K+ E+E + LW E D
Sbjct: 497 DSIVLEDNDDGVGQQDTWPPPVSVETPRERIWSLKKVEKVEKTKEEEEEEVLWDEFDTAR 556
Query: 164 ILEEINSPVDIIGNNEGRENQTFICKHDFRIDDEMGEICRKCSWVANEIKYVWPPVV 220
+ S + +G N G +F C+HD +D+E+G C+ C V EIKY+ PPV+
Sbjct: 557 RESDAESMIGNLGENGG---PSFRCEHDSFLDEEIGLFCKLCHEVVTEIKYISPPVI 610
>Medtr7g450780.1 | SNF2 family amine-terminal protein | LC |
chr7:16969460-16964457 | 20130731
Length = 1351
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 121 DTRSPAYGEKPPLK--WNIKEAEPLKKSASEQELDTLWAEMDFQLILEEINSPVDIIGNN 178
DT+ P P + W++K+ E ++K+ E+E + LW E++ L E + + +
Sbjct: 598 DTQPPPVSVDTPHERIWSLKKVEKVQKTKEEEENEVLWDELETTLRELEAVCKIGNLETD 657
Query: 179 EGRENQTFICKHDFRIDDEMGEICRKCSWVANEIKYVWPPVV 220
E + + C+H+ +D+E+GE C+ C V E KY+ P V+
Sbjct: 658 EASGSPSSCCEHNIFLDEEIGEYCKSCGVVITETKYISPLVI 699
>Medtr1g081750.1 | chromatin remodeling complex subunit | LC |
chr1:36372091-36376631 | 20130731
Length = 1116
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 151 ELDTLWAEMDFQLILEEINSPVDIIGNNEGRENQTFI------CKHDFRIDDEMGEICRK 204
+L +W EM+ L + ++ NEG + CKHD+R+D+++G CR
Sbjct: 409 DLADMWEEMETAL------TSSYLLDGNEGANGDEVLADTNKECKHDYRLDEQIGIYCRT 462
Query: 205 CSWVANEIKYVWPPVV 220
C +V EI+Y+ P+V
Sbjct: 463 CGFVKTEIRYISEPIV 478