Miyakogusa Predicted Gene

Lj3g3v0300640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0300640.1 tr|B9N6J8|B9N6J8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1116851 PE=4
SV=1,31.95,1e-18,seg,NULL; no description,Plant lipid transfer
protein/hydrophobic protein helical domain; Bifunction,CUFF.40465.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g085560.1 | protease inhibitor/seed storage/LTP family pro...   134   7e-32
Medtr3g083760.2 | Lipid transfer protein | HC | chr3:37789571-37...   100   1e-21
Medtr3g083760.1 | Lipid transfer protein | HC | chr3:37789330-37...    88   5e-18
Medtr7g014880.1 | RALF | HC | chr7:4453529-4456208 | 20130731          87   1e-17
Medtr8g446830.1 | Lipid transfer protein | HC | chr8:18323481-18...    81   6e-16

>Medtr8g085560.1 | protease inhibitor/seed storage/LTP family
           protein | HC | chr8:35432972-35436227 | 20130731
          Length = 194

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 89/150 (59%), Gaps = 15/150 (10%)

Query: 31  NQDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLLFKD------- 83
           NQD AEC NKL+ +  CLP+V +QA +P  DCCTG+KE+    KRCLC+L KD       
Sbjct: 30  NQDKAECTNKLLTLAGCLPFVTNQAKSPTIDCCTGVKEVVDKSKRCLCILIKDHDDPNLG 89

Query: 84  VQFNVLRALKLQGACKTPVNFTQCVDVLQLAPKSREAKVFEGYDKGISLNFXXXXXXXXX 143
           +  NV  ALKL   C +P N TQC+D+L L PKS EAKVFE + K +  N          
Sbjct: 90  LTINVTLALKLPNDCNSPTNITQCIDILHLKPKSHEAKVFEDFQKSLEKN-----TSTTV 144

Query: 144 XXXXXNAGNGTSTST--QDKN-GVWGKRFI 170
                   NGTSTST  QDKN G WGKR++
Sbjct: 145 PPASGTTRNGTSTSTIAQDKNGGGWGKRWL 174


>Medtr3g083760.2 | Lipid transfer protein | HC |
           chr3:37789571-37787523 | 20130731
          Length = 143

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 7/102 (6%)

Query: 32  QDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLLFKD-------V 84
           +D  +C +KL+ +  CLPYV   AN P  DCCT +K++ +N K+C+C+L KD        
Sbjct: 26  EDRKDCADKLVTLASCLPYVGGSANTPTIDCCTNLKQVLNNTKKCICILIKDSNDPKLGF 85

Query: 85  QFNVLRALKLQGACKTPVNFTQCVDVLQLAPKSREAKVFEGY 126
             N   A++L  AC  P N ++CVD+L L+PKS EAKVFEG 
Sbjct: 86  PMNATLAVQLPNACHIPSNISECVDLLHLSPKSPEAKVFEGL 127


>Medtr3g083760.1 | Lipid transfer protein | HC |
           chr3:37789330-37787885 | 20130731
          Length = 203

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 24/119 (20%)

Query: 32  QDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLLFKD-------V 84
           +D  +C +KL+ +  CLPYV   AN P  DCCT +K++ +N K+C+C+L KD        
Sbjct: 26  EDRKDCADKLVTLASCLPYVGGSANTPTIDCCTNLKQVLNNTKKCICILIKDSNDPKLGF 85

Query: 85  QFNVLRALKLQGACKTPVNFTQCV-----------------DVLQLAPKSREAKVFEGY 126
             N   A++L  AC  P N ++CV                 D+L L+PKS EAKVFEG 
Sbjct: 86  PMNATLAVQLPNACHIPSNISECVGNGIDLEPRSVLLLKVSDLLHLSPKSPEAKVFEGL 144


>Medtr7g014880.1 | RALF | HC | chr7:4453529-4456208 | 20130731
          Length = 191

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 7/99 (7%)

Query: 32  QDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLLFKD-------V 84
           Q+  +C  +L  +T CLPY+   AN+P  DCC+G+ +   N K+C+C++ KD       +
Sbjct: 30  QEKQKCAEQLTDLTTCLPYLGGSANSPTSDCCSGLIQSTKNNKKCICIIIKDRDDPDLGL 89

Query: 85  QFNVLRALKLQGACKTPVNFTQCVDVLQLAPKSREAKVF 123
           + N+  AL L   C TP NF+QC  +L L PKS EA+ F
Sbjct: 90  KINITLALGLPSLCNTPDNFSQCSSLLHLDPKSSEAQAF 128


>Medtr8g446830.1 | Lipid transfer protein | HC |
           chr8:18323481-18325978 | 20130731
          Length = 195

 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 31  NQDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLLFKD------- 83
           +++  EC  +L G+  CLPYV  +   P  DCC G+K +    K+CLC++ KD       
Sbjct: 28  SKEKQECTAQLTGLASCLPYVEGEGKTPAPDCCDGLKTLLKTNKKCLCVIIKDRNDPDLG 87

Query: 84  -VQFNVLRALKLQGACKTPVNFTQCVDVLQLAPKSREAKVFEGYDKGIS 131
            +  NV  AL L   C  P N ++C ++L + P S EA+VF   + G S
Sbjct: 88  GIVINVTLALNLPTVCNAPANISKCPELLHMDPNSAEAQVFYTLNNGSS 136