Miyakogusa Predicted Gene

Lj3g3v0290390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0290390.1 Non Characterized Hit- tr|I3SH56|I3SH56_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.51,0,seg,NULL;
Snf7,Snf7; coiled-coil,NULL; CHARGED MULTIVESICULAR BODY PROTEIN
1A,NULL; CHARGED MULTIVES,CUFF.40453.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100420.1 | charged multivesicular body protein | HC | chr...   337   7e-93
Medtr8g019700.1 | charged multivesicular body protein | HC | chr...    49   4e-06
Medtr2g041190.1 | charged multivesicular body protein | HC | chr...    47   9e-06

>Medtr2g100420.1 | charged multivesicular body protein | HC |
           chr2:43153549-43152380 | 20130731
          Length = 205

 Score =  337 bits (863), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 171/204 (83%), Positives = 178/204 (87%), Gaps = 2/204 (0%)

Query: 3   GSAEKLMNQIMELKFTSKSLQRQARXXXXXXXXXXXXXXXXXXXGNMDGARIYAENAIRK 62
           G+ EKL+NQIMELKFTSKSLQRQAR                   GNMDGARIYAENAIRK
Sbjct: 2   GNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRK 61

Query: 63  RTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLESTLATGNLQKMSETMDSF 122
           RTEQMNYLRLSSRLDAV ARLDTQAKM+TISKSMGNIVKSLES+LATGNLQKMSETMD F
Sbjct: 62  RTEQMNYLRLSSRLDAVSARLDTQAKMSTISKSMGNIVKSLESSLATGNLQKMSETMDQF 121

Query: 123 EKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGLEVSVGLPQAAAHAVPV 182
           EKQFVNMEVQAEFMES+MAGSTSLSTPEG+VN+LMQQVADDYGLEVSV LP AAAHAVPV
Sbjct: 122 EKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVNLPVAAAHAVPV 181

Query: 183 KE--AEKVDEDDLSRRLAELKARG 204
           KE  AEKVDEDDLSRRLAELKARG
Sbjct: 182 KEKDAEKVDEDDLSRRLAELKARG 205


>Medtr8g019700.1 | charged multivesicular body protein | HC |
           chr8:7006345-7009232 | 20130731
          Length = 224

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%)

Query: 47  GNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLEST 106
           G M   R+ A++ IR R +   + +L S+L  V  R+ T      +  +M  + K++   
Sbjct: 54  GQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGDAMKGVTKAMGQM 113

Query: 107 LATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGL 166
               NL  + + M  FE+Q   ME+ +E M  ++  +      E +  +L+ QV D+ G+
Sbjct: 114 NRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGI 173

Query: 167 EVS 169
           +++
Sbjct: 174 DIN 176


>Medtr2g041190.1 | charged multivesicular body protein | HC |
           chr2:18065645-18070228 | 20130731
          Length = 223

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 60/123 (48%)

Query: 47  GNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLEST 106
           G M   R+ A++ +R R +   + +L S+L  V  R+ T      + ++M  + K++   
Sbjct: 54  GQMGAVRVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113

Query: 107 LATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGL 166
               NL  + + M  FE+Q   ME+  E M  ++  +      E + + L+ QV D+ G+
Sbjct: 114 NRQMNLPNLQKIMQDFERQNEKMELTMEVMGDAIDDALEGDEEEEETDELVNQVLDEIGI 173

Query: 167 EVS 169
           +++
Sbjct: 174 DIN 176