Miyakogusa Predicted Gene
- Lj3g3v0290230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0290230.1 tr|G7IHX8|G7IHX8_MEDTR DNA repair protein
radA-like protein OS=Medicago truncatula GN=MTR_2g100640
P,62.29,0,seg,NULL; no description,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; sms: DNA repair prot,CUFF.40443.1
(589 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g100640.1 | DNA repair-like proteinRadA | HC | chr2:432588... 775 0.0
Medtr8g014670.1 | DNA repair-like proteinRadA | HC | chr8:467310... 697 0.0
Medtr2g100640.2 | DNA repair-like proteinRadA | HC | chr2:432589... 686 0.0
>Medtr2g100640.1 | DNA repair-like proteinRadA | HC |
chr2:43258898-43267867 | 20130731
Length = 605
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/612 (65%), Positives = 464/612 (75%), Gaps = 33/612 (5%)
Query: 1 MRLLRTIFIQHK-HHLLHPKRCIXXXXXXXXXXXXDADNKGT------------GWSSYG 47
M+LLRTIFI HK HH L+PKR ++ T WS YG
Sbjct: 1 MKLLRTIFIHHKNHHFLNPKRVFSSLLSPNPSSTTTPEDTETLHSNEKPQKPTNTWSMYG 60
Query: 48 GIFDPPVAQQRPNDHS-DAKVGKPTPSDHSDTEVEDIPRENPTPTXXXXXXXXXXXXXXX 106
+ +Q+ N+H+ D + + P++ + + ++ + T
Sbjct: 61 NVI---ATKQKINNHNEDDETKEEKPTESENGSMMNLKNK----TIFKTAATTVTVDKRS 113
Query: 107 XXXXXTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADD--KARNWLA---DV 161
TQWVC NCG+ AGQWWGTC SC MVGTMK FHE KLGD D K R L+ DV
Sbjct: 114 TKKVKTQWVCCNCGYTAGQWWGTCPSCTMVGTMKEFHEAKLGDGIDSNKVRTGLSVSEDV 173
Query: 162 VGSWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGD 221
+G+WLPQR DQL P+KL EVNRGF+++ WR PLSGPFGDEVS VLGGGLVPGSL LVSGD
Sbjct: 174 MGAWLPQRGDQLHPVKLSEVNRGFDEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGD 233
Query: 222 PGVGKSTLLLQVAAMIADG--HKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSS 279
PGVGKSTLLLQ+AA+IADG GEA PVVYVSGEESLQQIGHRA RLGI SDIYLYSS
Sbjct: 234 PGVGKSTLLLQMAALIADGCNDSDGEALPVVYVSGEESLQQIGHRAGRLGINSDIYLYSS 293
Query: 280 TDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVL 339
TDIED+++ AQS RALVVDSIQTVY K IA SAGG VQVKECT ALMRFAKTTNIPVL
Sbjct: 294 TDIEDIIRIAQSFPIRALVVDSIQTVYLKGIAGSAGGIVQVKECTSALMRFAKTTNIPVL 353
Query: 340 LIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLG 399
LIGHVTKSGDIAGPR+LEHIVDVVLY+EGER+T+YRMLRAVKNRFGSTDELGVFEMS+ G
Sbjct: 354 LIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESG 413
Query: 400 FRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSV--SSPQLV- 456
F+AVSNA+EMFLTEQD+ SDVL GLA TVIMDGSR F+IE+QALCL +S V S+ ++V
Sbjct: 414 FKAVSNATEMFLTEQDADSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSRVVN 473
Query: 457 GIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFP 516
GI T+RANMIKCVLIKQAGLH+ N + LNVV G+K+ +ETAGDLAIAAAICSSFLE+P
Sbjct: 474 GIDTDRANMIKCVLIKQAGLHIPVNSVHLNVVSGLKM--TETAGDLAIAAAICSSFLEYP 531
Query: 517 MPKDIAFIGEIGLSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVC 576
+PK IAFIGEIGLSGELRTVPRI+KR+H +AKLGY+ CVVPKQ K LGT G+EN++VV
Sbjct: 532 IPKGIAFIGEIGLSGELRTVPRIDKRVHALAKLGYKTCVVPKQALKALGTEGLENIKVVG 591
Query: 577 CRNLKEFINTVF 588
C+NLKEFIN VF
Sbjct: 592 CKNLKEFINAVF 603
>Medtr8g014670.1 | DNA repair-like proteinRadA | HC |
chr8:4673108-4664178 | 20130731
Length = 674
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/477 (72%), Positives = 398/477 (83%), Gaps = 8/477 (1%)
Query: 114 WVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNW--LADVVGSWLPQRPD 171
WVC +CG+ GQWWG C SC + GTMK FHE K + +K + L D +GSWLP++
Sbjct: 83 WVCSDCGYSTGQWWGVCRSCSVSGTMKEFHEVK---SSEKVSGFSVLEDGLGSWLPEKSG 139
Query: 172 QLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKSTLLL 231
+LRP++L EVNRG + WRI LSGPFG+EVSRVLGGGLVPGSLTLV GDPGVGKSTLLL
Sbjct: 140 ELRPLRLSEVNRGVDHLHWRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLL 199
Query: 232 QVAAMIADGHKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDLLKKAQS 291
QVAAM+A+G + ASPVVYVSGEES++QIG+RADRL I SDIYLYSS DIED+LKK Q
Sbjct: 200 QVAAMLAEGDEDVGASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSNDIEDILKKVQY 259
Query: 292 LSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVLLIGHVTKSGDIA 351
+SPRALVVDS+QTVY K I S GG +QVKECT AL+RFAKTTNIPVLLIGHVTKSGDIA
Sbjct: 260 ISPRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIA 319
Query: 352 GPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLGFRAVSNASEMFL 411
GPR+LEHIVDVVLYMEGE+YT++RMLRAVKNRFGSTDELGVFEMS G +AVSNASEMFL
Sbjct: 320 GPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFL 379
Query: 412 TEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKCVLI 471
+EQD SDVLAGLA+ VIMDGSR F+IEIQALCL S+ S Q GIQ NRA+MI VLI
Sbjct: 380 SEQDLDSDVLAGLAVAVIMDGSRTFLIEIQALCLSGST-GSRQFNGIQANRADMIISVLI 438
Query: 472 KQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIGLSG 531
KQAGL LQE+ +FLNVV G+ + +ETAGDLAIAAAICSS LE P+P DIAFIGEIGL G
Sbjct: 439 KQAGLRLQEHAVFLNVVSGLTV--TETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGG 496
Query: 532 ELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVF 588
ELR V R+EKR+HTVAKLGYRMC++PK EKVLGT G+EN++VV CRNLK+ INT+F
Sbjct: 497 ELRMVTRMEKRVHTVAKLGYRMCIIPKAAEKVLGTEGLENIKVVGCRNLKDVINTIF 553
>Medtr2g100640.2 | DNA repair-like proteinRadA | HC |
chr2:43258901-43267867 | 20130731
Length = 547
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/555 (65%), Positives = 415/555 (74%), Gaps = 33/555 (5%)
Query: 1 MRLLRTIFIQHK-HHLLHPKRCIXXXXXXXXXXXXDADNKGT------------GWSSYG 47
M+LLRTIFI HK HH L+PKR ++ T WS YG
Sbjct: 1 MKLLRTIFIHHKNHHFLNPKRVFSSLLSPNPSSTTTPEDTETLHSNEKPQKPTNTWSMYG 60
Query: 48 GIFDPPVAQQRPNDHS-DAKVGKPTPSDHSDTEVEDIPRENPTPTXXXXXXXXXXXXXXX 106
+ +Q+ N+H+ D + + P++ + + ++ + T
Sbjct: 61 NVI---ATKQKINNHNEDDETKEEKPTESENGSMMNLKNK----TIFKTAATTVTVDKRS 113
Query: 107 XXXXXTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADD--KARNWLA---DV 161
TQWVC NCG+ AGQWWGTC SC MVGTMK FHE KLGD D K R L+ DV
Sbjct: 114 TKKVKTQWVCCNCGYTAGQWWGTCPSCTMVGTMKEFHEAKLGDGIDSNKVRTGLSVSEDV 173
Query: 162 VGSWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGD 221
+G+WLPQR DQL P+KL EVNRGF+++ WR PLSGPFGDEVS VLGGGLVPGSL LVSGD
Sbjct: 174 MGAWLPQRGDQLHPVKLSEVNRGFDEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGD 233
Query: 222 PGVGKSTLLLQVAAMIADG--HKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSS 279
PGVGKSTLLLQ+AA+IADG GEA PVVYVSGEESLQQIGHRA RLGI SDIYLYSS
Sbjct: 234 PGVGKSTLLLQMAALIADGCNDSDGEALPVVYVSGEESLQQIGHRAGRLGINSDIYLYSS 293
Query: 280 TDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVL 339
TDIED+++ AQS RALVVDSIQTVY K IA SAGG VQVKECT ALMRFAKTTNIPVL
Sbjct: 294 TDIEDIIRIAQSFPIRALVVDSIQTVYLKGIAGSAGGIVQVKECTSALMRFAKTTNIPVL 353
Query: 340 LIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLG 399
LIGHVTKSGDIAGPR+LEHIVDVVLY+EGER+T+YRMLRAVKNRFGSTDELGVFEMS+ G
Sbjct: 354 LIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESG 413
Query: 400 FRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSV--SSPQLV- 456
F+AVSNA+EMFLTEQD+ SDVL GLA TVIMDGSR F+IE+QALCL +S V S+ ++V
Sbjct: 414 FKAVSNATEMFLTEQDADSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSRVVN 473
Query: 457 GIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFP 516
GI T+RANMIKCVLIKQAGLH+ N + LNVV G+K+ +ETAGDLAIAAAICSSFLE+P
Sbjct: 474 GIDTDRANMIKCVLIKQAGLHIPVNSVHLNVVSGLKM--TETAGDLAIAAAICSSFLEYP 531
Query: 517 MPKDIAFIGEIGLSG 531
+PK IAFIGEIGLSG
Sbjct: 532 IPKGIAFIGEIGLSG 546