Miyakogusa Predicted Gene

Lj3g3v0290230.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0290230.1 tr|G7IHX8|G7IHX8_MEDTR DNA repair protein
radA-like protein OS=Medicago truncatula GN=MTR_2g100640
P,62.29,0,seg,NULL; no description,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; sms: DNA repair prot,CUFF.40443.1
         (589 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100640.1 | DNA repair-like proteinRadA | HC | chr2:432588...   775   0.0  
Medtr8g014670.1 | DNA repair-like proteinRadA | HC | chr8:467310...   697   0.0  
Medtr2g100640.2 | DNA repair-like proteinRadA | HC | chr2:432589...   686   0.0  

>Medtr2g100640.1 | DNA repair-like proteinRadA | HC |
           chr2:43258898-43267867 | 20130731
          Length = 605

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/612 (65%), Positives = 464/612 (75%), Gaps = 33/612 (5%)

Query: 1   MRLLRTIFIQHK-HHLLHPKRCIXXXXXXXXXXXXDADNKGT------------GWSSYG 47
           M+LLRTIFI HK HH L+PKR                ++  T             WS YG
Sbjct: 1   MKLLRTIFIHHKNHHFLNPKRVFSSLLSPNPSSTTTPEDTETLHSNEKPQKPTNTWSMYG 60

Query: 48  GIFDPPVAQQRPNDHS-DAKVGKPTPSDHSDTEVEDIPRENPTPTXXXXXXXXXXXXXXX 106
            +      +Q+ N+H+ D +  +  P++  +  + ++  +    T               
Sbjct: 61  NVI---ATKQKINNHNEDDETKEEKPTESENGSMMNLKNK----TIFKTAATTVTVDKRS 113

Query: 107 XXXXXTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADD--KARNWLA---DV 161
                TQWVC NCG+ AGQWWGTC SC MVGTMK FHE KLGD  D  K R  L+   DV
Sbjct: 114 TKKVKTQWVCCNCGYTAGQWWGTCPSCTMVGTMKEFHEAKLGDGIDSNKVRTGLSVSEDV 173

Query: 162 VGSWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGD 221
           +G+WLPQR DQL P+KL EVNRGF+++ WR PLSGPFGDEVS VLGGGLVPGSL LVSGD
Sbjct: 174 MGAWLPQRGDQLHPVKLSEVNRGFDEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGD 233

Query: 222 PGVGKSTLLLQVAAMIADG--HKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSS 279
           PGVGKSTLLLQ+AA+IADG     GEA PVVYVSGEESLQQIGHRA RLGI SDIYLYSS
Sbjct: 234 PGVGKSTLLLQMAALIADGCNDSDGEALPVVYVSGEESLQQIGHRAGRLGINSDIYLYSS 293

Query: 280 TDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVL 339
           TDIED+++ AQS   RALVVDSIQTVY K IA SAGG VQVKECT ALMRFAKTTNIPVL
Sbjct: 294 TDIEDIIRIAQSFPIRALVVDSIQTVYLKGIAGSAGGIVQVKECTSALMRFAKTTNIPVL 353

Query: 340 LIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLG 399
           LIGHVTKSGDIAGPR+LEHIVDVVLY+EGER+T+YRMLRAVKNRFGSTDELGVFEMS+ G
Sbjct: 354 LIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESG 413

Query: 400 FRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSV--SSPQLV- 456
           F+AVSNA+EMFLTEQD+ SDVL GLA TVIMDGSR F+IE+QALCL +S V  S+ ++V 
Sbjct: 414 FKAVSNATEMFLTEQDADSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSRVVN 473

Query: 457 GIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFP 516
           GI T+RANMIKCVLIKQAGLH+  N + LNVV G+K+  +ETAGDLAIAAAICSSFLE+P
Sbjct: 474 GIDTDRANMIKCVLIKQAGLHIPVNSVHLNVVSGLKM--TETAGDLAIAAAICSSFLEYP 531

Query: 517 MPKDIAFIGEIGLSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVC 576
           +PK IAFIGEIGLSGELRTVPRI+KR+H +AKLGY+ CVVPKQ  K LGT G+EN++VV 
Sbjct: 532 IPKGIAFIGEIGLSGELRTVPRIDKRVHALAKLGYKTCVVPKQALKALGTEGLENIKVVG 591

Query: 577 CRNLKEFINTVF 588
           C+NLKEFIN VF
Sbjct: 592 CKNLKEFINAVF 603


>Medtr8g014670.1 | DNA repair-like proteinRadA | HC |
           chr8:4673108-4664178 | 20130731
          Length = 674

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/477 (72%), Positives = 398/477 (83%), Gaps = 8/477 (1%)

Query: 114 WVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNW--LADVVGSWLPQRPD 171
           WVC +CG+  GQWWG C SC + GTMK FHE K   + +K   +  L D +GSWLP++  
Sbjct: 83  WVCSDCGYSTGQWWGVCRSCSVSGTMKEFHEVK---SSEKVSGFSVLEDGLGSWLPEKSG 139

Query: 172 QLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKSTLLL 231
           +LRP++L EVNRG +   WRI LSGPFG+EVSRVLGGGLVPGSLTLV GDPGVGKSTLLL
Sbjct: 140 ELRPLRLSEVNRGVDHLHWRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLL 199

Query: 232 QVAAMIADGHKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDLLKKAQS 291
           QVAAM+A+G +   ASPVVYVSGEES++QIG+RADRL I SDIYLYSS DIED+LKK Q 
Sbjct: 200 QVAAMLAEGDEDVGASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSNDIEDILKKVQY 259

Query: 292 LSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVLLIGHVTKSGDIA 351
           +SPRALVVDS+QTVY K I  S GG +QVKECT AL+RFAKTTNIPVLLIGHVTKSGDIA
Sbjct: 260 ISPRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIA 319

Query: 352 GPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLGFRAVSNASEMFL 411
           GPR+LEHIVDVVLYMEGE+YT++RMLRAVKNRFGSTDELGVFEMS  G +AVSNASEMFL
Sbjct: 320 GPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFL 379

Query: 412 TEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKCVLI 471
           +EQD  SDVLAGLA+ VIMDGSR F+IEIQALCL  S+  S Q  GIQ NRA+MI  VLI
Sbjct: 380 SEQDLDSDVLAGLAVAVIMDGSRTFLIEIQALCLSGST-GSRQFNGIQANRADMIISVLI 438

Query: 472 KQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIGLSG 531
           KQAGL LQE+ +FLNVV G+ +  +ETAGDLAIAAAICSS LE P+P DIAFIGEIGL G
Sbjct: 439 KQAGLRLQEHAVFLNVVSGLTV--TETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGG 496

Query: 532 ELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVF 588
           ELR V R+EKR+HTVAKLGYRMC++PK  EKVLGT G+EN++VV CRNLK+ INT+F
Sbjct: 497 ELRMVTRMEKRVHTVAKLGYRMCIIPKAAEKVLGTEGLENIKVVGCRNLKDVINTIF 553


>Medtr2g100640.2 | DNA repair-like proteinRadA | HC |
           chr2:43258901-43267867 | 20130731
          Length = 547

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/555 (65%), Positives = 415/555 (74%), Gaps = 33/555 (5%)

Query: 1   MRLLRTIFIQHK-HHLLHPKRCIXXXXXXXXXXXXDADNKGT------------GWSSYG 47
           M+LLRTIFI HK HH L+PKR                ++  T             WS YG
Sbjct: 1   MKLLRTIFIHHKNHHFLNPKRVFSSLLSPNPSSTTTPEDTETLHSNEKPQKPTNTWSMYG 60

Query: 48  GIFDPPVAQQRPNDHS-DAKVGKPTPSDHSDTEVEDIPRENPTPTXXXXXXXXXXXXXXX 106
            +      +Q+ N+H+ D +  +  P++  +  + ++  +    T               
Sbjct: 61  NVI---ATKQKINNHNEDDETKEEKPTESENGSMMNLKNK----TIFKTAATTVTVDKRS 113

Query: 107 XXXXXTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADD--KARNWLA---DV 161
                TQWVC NCG+ AGQWWGTC SC MVGTMK FHE KLGD  D  K R  L+   DV
Sbjct: 114 TKKVKTQWVCCNCGYTAGQWWGTCPSCTMVGTMKEFHEAKLGDGIDSNKVRTGLSVSEDV 173

Query: 162 VGSWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGD 221
           +G+WLPQR DQL P+KL EVNRGF+++ WR PLSGPFGDEVS VLGGGLVPGSL LVSGD
Sbjct: 174 MGAWLPQRGDQLHPVKLSEVNRGFDEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGD 233

Query: 222 PGVGKSTLLLQVAAMIADG--HKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSS 279
           PGVGKSTLLLQ+AA+IADG     GEA PVVYVSGEESLQQIGHRA RLGI SDIYLYSS
Sbjct: 234 PGVGKSTLLLQMAALIADGCNDSDGEALPVVYVSGEESLQQIGHRAGRLGINSDIYLYSS 293

Query: 280 TDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVL 339
           TDIED+++ AQS   RALVVDSIQTVY K IA SAGG VQVKECT ALMRFAKTTNIPVL
Sbjct: 294 TDIEDIIRIAQSFPIRALVVDSIQTVYLKGIAGSAGGIVQVKECTSALMRFAKTTNIPVL 353

Query: 340 LIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLG 399
           LIGHVTKSGDIAGPR+LEHIVDVVLY+EGER+T+YRMLRAVKNRFGSTDELGVFEMS+ G
Sbjct: 354 LIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESG 413

Query: 400 FRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSV--SSPQLV- 456
           F+AVSNA+EMFLTEQD+ SDVL GLA TVIMDGSR F+IE+QALCL +S V  S+ ++V 
Sbjct: 414 FKAVSNATEMFLTEQDADSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSRVVN 473

Query: 457 GIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFP 516
           GI T+RANMIKCVLIKQAGLH+  N + LNVV G+K+  +ETAGDLAIAAAICSSFLE+P
Sbjct: 474 GIDTDRANMIKCVLIKQAGLHIPVNSVHLNVVSGLKM--TETAGDLAIAAAICSSFLEYP 531

Query: 517 MPKDIAFIGEIGLSG 531
           +PK IAFIGEIGLSG
Sbjct: 532 IPKGIAFIGEIGLSG 546