Miyakogusa Predicted Gene

Lj3g3v0260450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0260450.1 tr|Q2QMR8|Q2QMR8_ORYSJ Os12g0594000 protein
OS=Oryza sativa subsp. japonica GN=LOC_Os12g40260 PE=4
S,44.64,1e-16,WD40 repeat-like,WD40-repeat-containing domain; WD40
repeats,WD40 repeat; WD40,WD40 repeat; no descr,CUFF.40829.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101410.1 | F-box and wd40 domain protein, putative | HC |...   198   1e-51
Medtr4g068457.1 | transducin/WD40 repeat protein | HC | chr4:257...    90   7e-19
Medtr3g110185.1 | lactoylglutathione lyase | HC | chr3:51187554-...    86   1e-17
Medtr8g089650.1 | transducin/WD40 repeat protein | HC | chr8:373...    78   2e-15
Medtr1g021590.1 | transducin/WD40 repeat protein | HC | chr1:648...    74   3e-14
Medtr4g104410.1 | transducin/WD40 repeat protein | HC | chr4:432...    74   4e-14
Medtr4g106480.1 | myosin heavy chain kinase B-like protein | HC ...    74   4e-14
Medtr5g035980.1 | transducin/WD40 repeat protein | HC | chr5:156...    71   2e-13
Medtr3g078380.1 | myosin heavy chain kinase B-like protein | HC ...    70   6e-13
Medtr5g018520.1 | transducin/WD40 repeat protein | HC | chr5:691...    69   8e-13
Medtr2g060070.1 | transducin/WD40 repeat protein | HC | chr2:247...    55   2e-08
Medtr8g104010.1 | stomatal cytokinesis defective protein, putati...    50   5e-07
Medtr8g104010.2 | stomatal cytokinesis defective protein, putati...    50   6e-07
Medtr8g104010.3 | stomatal cytokinesis defective protein, putati...    50   7e-07

>Medtr2g101410.1 | F-box and wd40 domain protein, putative | HC |
           chr2:43602566-43604279 | 20130731
          Length = 436

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 107/126 (84%), Gaps = 6/126 (4%)

Query: 15  FAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGP 74
           FAGQLQYGGSIQGHTHAV+CLASV+++VVSGSADSTSRVW RE+DGQH CLAVL GHRGP
Sbjct: 310 FAGQLQYGGSIQGHTHAVLCLASVAKYVVSGSADSTSRVWSRERDGQHVCLAVLAGHRGP 369

Query: 75  IRCVSAFIGGTRLVE-DNEDSCTVCTGSLDGVLKLWRVSHT-----NNQCSSQAGVKYFE 128
           IR V+AF+GG  + E DNEDSCTVCTGSLDGVLKLWRV+ T     NNQC SQ G KYFE
Sbjct: 370 IRSVTAFLGGCLVKEDDNEDSCTVCTGSLDGVLKLWRVTLTKNAPDNNQCLSQVGNKYFE 429

Query: 129 HYKGLQ 134
            YKG Q
Sbjct: 430 LYKGFQ 435


>Medtr4g068457.1 | transducin/WD40 repeat protein | HC |
           chr4:25703784-25702268 | 20130731
          Length = 498

 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%)

Query: 7   FTNFFSFHFAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLA 66
             NF+       L +GG ++GH  AV+CLA+    V SGSAD    VW R++ G H CL+
Sbjct: 352 LVNFWEHQQKNNLTHGGVLKGHKLAVLCLAAAGNLVFSGSADKNVCVWRRDERGAHICLS 411

Query: 67  VLVGHRGPIRCVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVS 112
           VL GH GP++C++         + ++    V TGSLD  +K+WRVS
Sbjct: 412 VLTGHTGPVKCIAVEEHEEEEDDRDDQRWIVYTGSLDKSVKVWRVS 457


>Medtr3g110185.1 | lactoylglutathione lyase | HC |
           chr3:51187554-51183426 | 20130731
          Length = 821

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 8/105 (7%)

Query: 18  QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG-QHTCLAVLVGHRGPIR 76
           +  +GG +QGH  AV+C+ +V   V SGS D+T RVW RE+D   H CL VL GHRGP+R
Sbjct: 319 RFNHGGFLQGHRFAVLCVETVGNMVFSGSEDTTIRVWRREEDSCYHECLMVLDGHRGPVR 378

Query: 77  CVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRV---SHTNNQC 118
           C++A +   ++V        V + SLD   K+WR+   S   N C
Sbjct: 379 CLAACLEMEKVVV----GFLVYSASLDQTFKVWRIKVFSEDENVC 419


>Medtr8g089650.1 | transducin/WD40 repeat protein | HC |
           chr8:37302350-37304422 | 20130731
          Length = 447

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 64/104 (61%), Gaps = 11/104 (10%)

Query: 16  AGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPI 75
           A  +   G+++GH  A++CL +VS  ++SGSAD T R+W R  DG   C+ VL GHR P+
Sbjct: 330 ANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRVYDGSFCCVGVLDGHRKPV 389

Query: 76  RCVSAFIGGTRLVEDNEDS-------CTVCTGSLDGVLKLWRVS 112
           + ++A     +   D+++S        +V +GSLDG +K+W++S
Sbjct: 390 KSLAAI----QEYNDDDESQSSPNGVVSVFSGSLDGEIKVWQLS 429


>Medtr1g021590.1 | transducin/WD40 repeat protein | HC |
           chr1:6486978-6485061 | 20130731
          Length = 470

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 18/105 (17%)

Query: 18  QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQ-HTCLAVLVGHRGPIR 76
           Q ++GG ++GH  AV+CLAS    V SGSAD T  VW R  DG  HTC++VL GH GP++
Sbjct: 340 QFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKR--DGVIHTCMSVLTGHDGPVK 397

Query: 77  CVSAFIGGTRLVEDNEDS-------CTVCTGSLDGVLKLWRVSHT 114
           C++        VE + +S         + +GSLD  +K+W VS +
Sbjct: 398 CLA--------VEQDRESDARGDQRWILYSGSLDKSVKVWSVSES 434


>Medtr4g104410.1 | transducin/WD40 repeat protein | HC |
           chr4:43205970-43207166 | 20130731
          Length = 367

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 25  IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG-QHTCLAVLVGHRGPIRCVSAFIG 83
           ++GH+ A++CL +V   + SGSAD T R+W RE+ G  + C  VL GH  P++ + A  G
Sbjct: 279 LRGHSGAILCLVNVDDLLASGSADLTVRIWQREKGGSSYCCRGVLEGHEKPVKSLVAISG 338

Query: 84  GTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
           G    ED+++  T+ +GSLDG +++W V
Sbjct: 339 GG---EDDDEVVTLFSGSLDGDIRVWEV 363


>Medtr4g106480.1 | myosin heavy chain kinase B-like protein | HC |
           chr4:44167568-44166363 | 20130731
          Length = 401

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 17  GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG---QHTCLAVLVGHRG 73
           G L   G+++GHT +++CLA VS  V SGS D T R+W    +    ++ CL+VL GH+G
Sbjct: 301 GNLIVIGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGNTNNVLREYCCLSVLEGHKG 360

Query: 74  PIRCVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
           PI+C++  I      + +E S  + +GSLD  +K+W++
Sbjct: 361 PIKCLT--IVFDHFDQPSEASFLIYSGSLDCDIKVWKI 396


>Medtr5g035980.1 | transducin/WD40 repeat protein | HC |
           chr5:15642825-15644475 | 20130731
          Length = 448

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 5/94 (5%)

Query: 23  GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQ-HTCLAVLVGHRGPIRCVS-- 79
           G+++GHT A++CL  +   V SGSAD++ R+W R  D + +TCLAVL GHR  ++C++  
Sbjct: 350 GALRGHTKAILCLVVMDDLVCSGSADNSVRLWKRGIDEKSYTCLAVLQGHRKAVKCLAIA 409

Query: 80  --AFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
             +  G    V+D+  S  V +GSLD  +K+W++
Sbjct: 410 DDSKSGKNGGVDDDGSSYLVYSGSLDCDIKVWQI 443


>Medtr3g078380.1 | myosin heavy chain kinase B-like protein | HC |
           chr3:35313647-35311848 | 20130731
          Length = 414

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 63/99 (63%), Gaps = 8/99 (8%)

Query: 17  GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVW---GREQDGQHTCLAVLVGHRG 73
           G++   G+++GH ++++CLA V  FV SGSAD T R+W   GR+    + CL++L GH+G
Sbjct: 315 GKMVLVGALRGHKNSILCLAVVWDFVCSGSADKTIRIWRGVGRD----YCCLSILEGHQG 370

Query: 74  PIRCVSAFIGG-TRLVEDNEDSCTVCTGSLDGVLKLWRV 111
            ++C++A +       E  E S  V +GSLD  +K+W++
Sbjct: 371 SVKCLTAVVEHCDDNSESEEPSFLVYSGSLDCDIKVWQI 409


>Medtr5g018520.1 | transducin/WD40 repeat protein | HC |
           chr5:6918027-6916505 | 20130731
          Length = 457

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 18  QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRC 77
            L++ G ++GH  AV+CL +    V SGSAD    VW R    +H C++VL GH GP++C
Sbjct: 328 NLEHCGILRGHKLAVLCLVAAGSLVFSGSADMAICVWKRSITNEHVCMSVLSGHTGPVKC 387

Query: 78  VSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHT 114
           ++A      ++  +E    + +GSLD  +K+W+V   
Sbjct: 388 LAAEKDLDVML--HERKWILYSGSLDKSVKVWKVKEN 422


>Medtr2g060070.1 | transducin/WD40 repeat protein | HC |
           chr2:24757910-24756085 | 20130731
          Length = 413

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 13/90 (14%)

Query: 26  QGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAF---- 81
           + H  AV+C+  +  F+ +GSAD +  +W RE  G+   + V++GH GP++C+ A     
Sbjct: 301 KAHEMAVLCMCLIEGFLCTGSADKSIGIWKREAFGKICKVGVIIGHEGPVKCLQASSSNR 360

Query: 82  IGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
           IGG  L+          +GSLD  +++W V
Sbjct: 361 IGGGFLLY---------SGSLDRSVRVWWV 381


>Medtr8g104010.1 | stomatal cytokinesis defective protein, putative |
            HC | chr8:43797022-43779326 | 20130731
          Length = 1209

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 25   IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGG 84
            + GHT  +  L  V   V++GS D T+R+W      + TC AVL  H GPI C       
Sbjct: 1032 LSGHTQWIRSLRMVGDTVITGSDDWTARIWSV---SRGTCDAVLACHAGPILC------- 1081

Query: 85   TRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGV 124
               VE +     + TGS DG+L+ W       +C+    V
Sbjct: 1082 ---VEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTV 1118



 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 18/102 (17%)

Query: 23  GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHT-CLAVLVGHRGPIRCVSAF 81
            +++GHT  V  ++S    VVSGS D +  VW    D Q T  L  L GH GP+ CV   
Sbjct: 907 ATLKGHTRTVRAISSDRGKVVSGSDDQSVLVW----DKQTTQLLEELKGHDGPVSCVRT- 961

Query: 82  IGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAG 123
           + G R          V T S DG +K+W V    ++C +  G
Sbjct: 962 LSGER----------VLTASHDGTVKMWDVR--TDRCVATVG 991


>Medtr8g104010.2 | stomatal cytokinesis defective protein, putative
           | HC | chr8:43793799-43779326 | 20130731
          Length = 929

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 25  IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGG 84
           + GHT  +  L  V   V++GS D T+R+W      + TC AVL  H GPI C       
Sbjct: 752 LSGHTQWIRSLRMVGDTVITGSDDWTARIWSV---SRGTCDAVLACHAGPILC------- 801

Query: 85  TRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGV 124
              VE +     + TGS DG+L+ W       +C+    V
Sbjct: 802 ---VEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTV 838



 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 23  GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHT-CLAVLVGHRGPIRCVSAF 81
            +++GHT  V  ++S    VVSGS D +  VW    D Q T  L  L GH GP+ CV   
Sbjct: 627 ATLKGHTRTVRAISSDRGKVVSGSDDQSVLVW----DKQTTQLLEELKGHDGPVSCVRTL 682

Query: 82  IGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAG 123
            G             V T S DG +K+W V    ++C +  G
Sbjct: 683 SGE-----------RVLTASHDGTVKMWDVR--TDRCVATVG 711


>Medtr8g104010.3 | stomatal cytokinesis defective protein, putative
           | HC | chr8:43792477-43779326 | 20130731
          Length = 846

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 25  IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGG 84
           + GHT  +  L  V   V++GS D T+R+W      + TC AVL  H GPI C       
Sbjct: 669 LSGHTQWIRSLRMVGDTVITGSDDWTARIWSV---SRGTCDAVLACHAGPILC------- 718

Query: 85  TRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGV 124
              VE +     + TGS DG+L+ W       +C+    V
Sbjct: 719 ---VEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTV 755



 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 23  GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHT-CLAVLVGHRGPIRCVSAF 81
            +++GHT  V  ++S    VVSGS D +  VW    D Q T  L  L GH GP+ CV   
Sbjct: 544 ATLKGHTRTVRAISSDRGKVVSGSDDQSVLVW----DKQTTQLLEELKGHDGPVSCVRTL 599

Query: 82  IGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAG 123
            G             V T S DG +K+W V    ++C +  G
Sbjct: 600 SGE-----------RVLTASHDGTVKMWDVR--TDRCVATVG 628