Miyakogusa Predicted Gene

Lj3g3v0258390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0258390.1 Non Characterized Hit- tr|I1K9D0|I1K9D0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,35.64,0.000000000006,WD40,WD40 repeat; seg,NULL;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domai,CUFF.40828.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101410.1 | F-box and wd40 domain protein, putative | HC |...   216   2e-56
Medtr3g110185.1 | lactoylglutathione lyase | HC | chr3:51187554-...    76   2e-14
Medtr4g068457.1 | transducin/WD40 repeat protein | HC | chr4:257...    60   2e-09
Medtr1g021590.1 | transducin/WD40 repeat protein | HC | chr1:648...    57   8e-09
Medtr5g018520.1 | transducin/WD40 repeat protein | HC | chr5:691...    55   5e-08

>Medtr2g101410.1 | F-box and wd40 domain protein, putative | HC |
           chr2:43602566-43604279 | 20130731
          Length = 436

 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 137/199 (68%), Gaps = 20/199 (10%)

Query: 1   MDSSNSPDPTPSFAFRSTT-----QNNFLRSRSTKETPYSNFLHSPPRLSCPTXXXXXXX 55
           MDS NSPD    FAF S+T      +N  RSRSTKETP+S       +LSCPT       
Sbjct: 1   MDSPNSPD----FAFTSSTTVHNNNSNIFRSRSTKETPFS-------KLSCPTFSRSLQN 49

Query: 56  XXXXXXXXXXXXXKVSSDSLSDPQTTYHCASSVLRNDGQVLSIALSSNNGFVYTGSDSNL 115
                        K+S       QTTYHCASSVLRNDGQ+ SIALSS+ G +YTGSDSN+
Sbjct: 50  SPVSSPQHHYFPTKLSD--FESLQTTYHCASSVLRNDGQITSIALSSS-GLLYTGSDSNV 106

Query: 116 VRVWKLPEFTEFGQLRTKACRVVALEVSNDTVYAAYGDGKIRTWTRTWD-KVLKHVRLAT 174
           VR WKLPEFTE GQL+TKA +VVA+EVSNDTVYAAYGDGKIR WT  WD KVLKHVR AT
Sbjct: 107 VRCWKLPEFTECGQLKTKASKVVAIEVSNDTVYAAYGDGKIRVWTIIWDNKVLKHVRSAT 166

Query: 175 IPKKVGYVRSYIGGKDKAV 193
           IPK +GYVRSYI GKDK +
Sbjct: 167 IPKTLGYVRSYIAGKDKTM 185


>Medtr3g110185.1 | lactoylglutathione lyase | HC |
           chr3:51187554-51183426 | 20130731
          Length = 821

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 63/97 (64%), Gaps = 2/97 (2%)

Query: 82  YHCASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALE 141
           YHC +S+ R++G + SIA+S   GF++TGS+S+ +RVWK P+  + G L++ +  +  + 
Sbjct: 78  YHCIASLHRHEGNIYSIAVSK--GFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEIRTIL 135

Query: 142 VSNDTVYAAYGDGKIRTWTRTWDKVLKHVRLATIPKK 178
             N+ V++++ D KIR W     +  K  ++AT+PK+
Sbjct: 136 AYNNMVFSSHKDHKIRIWNFNVSENFKSKKVATLPKR 172


>Medtr4g068457.1 | transducin/WD40 repeat protein | HC |
           chr4:25703784-25702268 | 20130731
          Length = 498

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 4/104 (3%)

Query: 87  SVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDT 146
           S+ R +G + S+A+S +   +YTG+DS  +RVWK  E  ++   ++ +  V ++ +S   
Sbjct: 123 SLAREEGHIYSLAVSGD--MLYTGTDSKNIRVWK--ELKDYTGFKSSSGLVKSIVISEGN 178

Query: 147 VYAAYGDGKIRTWTRTWDKVLKHVRLATIPKKVGYVRSYIGGKD 190
           ++  + DGKIR W  +      H R+ ++P    YV+S +  K+
Sbjct: 179 IFTGHQDGKIRVWKISSKNSRNHKRIGSLPTFKDYVKSSMNPKN 222


>Medtr1g021590.1 | transducin/WD40 repeat protein | HC |
           chr1:6486978-6485061 | 20130731
          Length = 470

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 75  LSDPQTTYH--------CASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTE 126
            S PQ + H           S++R +G + S+A S +   +YTGSDS  +RVWK     E
Sbjct: 84  FSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGD--LLYTGSDSKNIRVWK--NLQE 139

Query: 127 FGQLRTKACRVVALEVSNDTVYAAYGDGKIRTWTRTWDKVLKHVRLATIP 176
           +   ++ +  V A+ +S   ++  + DGKIR W  +      H R  T+P
Sbjct: 140 YCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLP 189


>Medtr5g018520.1 | transducin/WD40 repeat protein | HC |
           chr5:6918027-6916505 | 20130731
          Length = 457

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 87  SVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDT 146
           S++R +G + S+A + +   +YTGSDS  +RVWK  +  EF   ++ +  V A+ ++ + 
Sbjct: 92  SLVREEGHIYSLAATKD--LLYTGSDSKNIRVWKNQK--EFAGFKSNSGLVKAIVIAGEK 147

Query: 147 VYAAYGDGKIRTWTRTWDKVLKHVRLATIPKKVGYVR 183
           +   + DG+IR W  +      + R AT+P    Y++
Sbjct: 148 ILTGHQDGRIRVWRVSNKNEQTYRRAATLPTLRNYIK 184