Miyakogusa Predicted Gene

Lj3g3v0257290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0257290.1 tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare
OS=Medicago truncatula GN=MtrDRAFT_AC149489g2v2
PE=,80.7,0,TMF_TATA_bd,TATA element modulatory factor 1 TATA binding;
TMF_DNA_bd,TATA element modulatory factor,CUFF.40390.1
         (996 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101700.1 | coiled-coil vesicle tethering protein, putativ...  1231   0.0  
Medtr2g101700.2 | coiled-coil vesicle tethering protein, putativ...  1112   0.0  
Medtr2g043010.1 | viral A-type inclusion protein, putative | LC ...   180   6e-45

>Medtr2g101700.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr2:43755618-43744260 | 20130731
          Length = 992

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1005 (69%), Positives = 754/1005 (75%), Gaps = 27/1005 (2%)

Query: 1   MAWFNNAKTSWGNFPDLAGAVNKLQESVKSIEKNFDTALGFEEKS--ESSNDGGNEASGL 58
           MAWFN AK +WGNFPDLAGAVNKLQESVKSIEKNFD ALGFEEK    S+N+  +E+SG 
Sbjct: 1   MAWFN-AKNAWGNFPDLAGAVNKLQESVKSIEKNFDNALGFEEKDGESSNNEQASESSGS 59

Query: 59  WPASADTKNLFNPVMAFMGNKTEENSEETSDDVESSQKESEIDNSVEKGESPDHIPVAEG 118
           WP   D K LFNPV+AFMGNK EE+SEETS+++ESS+ ESE + + EK ES DH+PVAEG
Sbjct: 60  WPIPTDGKALFNPVLAFMGNKGEEDSEETSENIESSKLESEPEMAEEKPESLDHVPVAEG 119

Query: 119 KXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXTEPADGTTTQNLDQEKDEDQ-LPEMP 176
           K                                  E  DGTT Q+LD  KDE Q LPEMP
Sbjct: 120 KEVIETDKRDNVEAEEITVQEENKVHETEEDGEHVESVDGTTVQDLDHRKDEQQQLPEMP 179

Query: 177 VELPESPVQKFESLDSVDGSQEKEIAEVGTSESPV-SMQPMAPDLADDVVEGSTSEPGES 235
           VELPESP+QK E+ DS+  S+EKEIAEVGT ESPV + QPM  ++ DDVVEGSTSE GES
Sbjct: 180 VELPESPIQKSENSDSISNSEEKEIAEVGTLESPVMTQQPMVSNIVDDVVEGSTSELGES 239

Query: 236 HTISDVHENIQVETKDENTEET-VQIEESGDRFSSVQPXXXXXXXXXXXXXXHVLHSVAP 294
              SDVH+ I VET++E+ EE  V  EE+ +R SSVQP               VLHS+A 
Sbjct: 240 RGTSDVHDTIGVETEEESKEEERVHTEENVERISSVQPETSDDTEKRDDTDTSVLHSIAS 299

Query: 295 ETTDNIDQSHNEYLSGATPPNDLVLHENERNLESSDAVSDLVSHENEPTIEENETDHIAN 354
           E +++ DQS+NE+ S ATP             ESS+ VSDLVSH+NE  +EENE DH AN
Sbjct: 300 EESNSTDQSYNEHQSIATPN------------ESSEVVSDLVSHDNETIVEENERDH-AN 346

Query: 355 HVELDMKEQHLSSVGDMHDSDSAVELDRVKRDMKMMEXXXXXXXXXXXXXXXXXXKLMNE 414
           ++E D+KEQHLSS  +MHDSDS +EL+RVKR+MKMME                  KLMNE
Sbjct: 347 NIETDIKEQHLSSTQNMHDSDSKLELERVKREMKMMEAALQGAARQAQAKADEIAKLMNE 406

Query: 415 NEQLKALIEDLKRKSNEAEVESLREEYHQRVTTLERRIYALTKERDTLRREQNKKSDAAA 474
           NEQ KALIEDLKRKSNEAEVESLREEYHQRV+TLER++YALTKERDTLRREQNKKSDAAA
Sbjct: 407 NEQFKALIEDLKRKSNEAEVESLREEYHQRVSTLERKVYALTKERDTLRREQNKKSDAAA 466

Query: 475 LLKEKDEIINQVMAEGEELSKKQAAQESTIRKLRAQIRDFEEEKKGLTTKLQIEENKVES 534
           LLKEKDEII QVMAEGEELSKKQA QESTIRKLRAQIRD EEEKKGLTTKLQ+EENKVES
Sbjct: 467 LLKEKDEIITQVMAEGEELSKKQATQESTIRKLRAQIRDLEEEKKGLTTKLQVEENKVES 526

Query: 535 IKRDKTATEKLLQETIEKHQNELAAQKEYYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 594
           IKRDKTATEKLLQETIEKHQNELA QKEYY                              
Sbjct: 527 IKRDKTATEKLLQETIEKHQNELAVQKEYYTNALAAAKESEALAEARANNEARTELESRL 586

Query: 595 XXXXXXXXMLVQTLEELRQTLSRKEQQAVFKEDMLHRDIEDLQKRYQASERRCEELITQV 654
                   MLVQ LEELRQTLSRKEQQAVFKEDML RDIEDLQKRYQASERRCEELITQV
Sbjct: 587 REAEERESMLVQALEELRQTLSRKEQQAVFKEDMLCRDIEDLQKRYQASERRCEELITQV 646

Query: 655 PESTRPLLRQIEAMQXXXXXXXXXXXXXXXSLNSRLQEAEAKAATSEERERSVNERLSQT 714
           PESTRPLLRQIEAMQ               +LNSRLQEAEAKAAT+EERERSVN+RLSQT
Sbjct: 647 PESTRPLLRQIEAMQDSNARRAEAWAAVERTLNSRLQEAEAKAATAEERERSVNDRLSQT 706

Query: 715 LSRINVLEAQISCLRAEQTQLSRTLEKERQRAAESRQEYLAAKEEADTHEGRVRQLEEDI 774
           LSRINVLEAQISCLRAEQTQLSRTLEKERQRAAESRQEYLAAKEEADT EGR RQ EE+I
Sbjct: 707 LSRINVLEAQISCLRAEQTQLSRTLEKERQRAAESRQEYLAAKEEADTQEGRARQFEEEI 766

Query: 775 RDLRQKHKQELQEVLMHRELLQQEIEKEKAARADLERTARVHSA----QTPTTKLNSAFE 830
           RD+RQKHKQELQE L+HRELLQQEIEKEKAAR+DLERT R HSA    QT TTK NSAFE
Sbjct: 767 RDIRQKHKQELQEALIHRELLQQEIEKEKAARSDLERTVRAHSAPSSEQTSTTKHNSAFE 826

Query: 831 NGNLSRKVXXXXXXXXXXXXHFLQASLDSSDSYSERR---ELSMSPYYMKSMTPSSFEAA 887
           NGNLSRK+            +FLQASLDSSDS SERR   ELSMSPYYMKSMTPSSFEAA
Sbjct: 827 NGNLSRKLSTASSLGSMEESYFLQASLDSSDSSSERRNPGELSMSPYYMKSMTPSSFEAA 886

Query: 888 LRQKEGELASYMSRLASLESIRDSLADELVKLTAQCEKLRAEAAVLPGLRSELEALRRRH 947
           LRQKEGELASYMSRLASLESIRDSLA+ELVKLTAQCEKLR E AVLPGL+SELEALRRRH
Sbjct: 887 LRQKEGELASYMSRLASLESIRDSLAEELVKLTAQCEKLRGEVAVLPGLKSELEALRRRH 946

Query: 948 SAAXXXXXXXXXXXXXXRADIVDLKEMYREQVNLLVNKIQVMGSS 992
           SAA              RADIVDLKEMYREQVNLLVNKIQ+M SS
Sbjct: 947 SAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQIMSSS 991


>Medtr2g101700.2 | coiled-coil vesicle tethering protein, putative |
           HC | chr2:43755618-43744260 | 20130731
          Length = 916

 Score = 1112 bits (2876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/928 (68%), Positives = 692/928 (74%), Gaps = 24/928 (2%)

Query: 76  MGNKTEENSEETSDDVESSQKESEIDNSVEKGESPDHIPVAEGKXXXXXXXXXXXXXXX- 134
           MGNK EE+SEETS+++ESS+ ESE + + EK ES DH+PVAEGK                
Sbjct: 1   MGNKGEEDSEETSENIESSKLESEPEMAEEKPESLDHVPVAEGKEVIETDKRDNVEAEEI 60

Query: 135 XXXXXXXXXXXXXXXXXTEPADGTTTQNLDQEKDEDQ-LPEMPVELPESPVQKFESLDSV 193
                             E  DGTT Q+LD  KDE Q LPEMPVELPESP+QK E+ DS+
Sbjct: 61  TVQEENKVHETEEDGEHVESVDGTTVQDLDHRKDEQQQLPEMPVELPESPIQKSENSDSI 120

Query: 194 DGSQEKEIAEVGTSESPV-SMQPMAPDLADDVVEGSTSEPGESHTISDVHENIQVETKDE 252
             S+EKEIAEVGT ESPV + QPM  ++ DDVVEGSTSE GES   SDVH+ I VET++E
Sbjct: 121 SNSEEKEIAEVGTLESPVMTQQPMVSNIVDDVVEGSTSELGESRGTSDVHDTIGVETEEE 180

Query: 253 NTEET-VQIEESGDRFSSVQPXXXXXXXXXXXXXXHVLHSVAPETTDNIDQSHNEYLSGA 311
           + EE  V  EE+ +R SSVQP               VLHS+A E +++ DQS+NE+ S A
Sbjct: 181 SKEEERVHTEENVERISSVQPETSDDTEKRDDTDTSVLHSIASEESNSTDQSYNEHQSIA 240

Query: 312 TPPNDLVLHENERNLESSDAVSDLVSHENEPTIEENETDHIANHVELDMKEQHLSSVGDM 371
           TP             ESS+ VSDLVSH+NE  +EENE DH AN++E D+KEQHLSS  +M
Sbjct: 241 TPN------------ESSEVVSDLVSHDNETIVEENERDH-ANNIETDIKEQHLSSTQNM 287

Query: 372 HDSDSAVELDRVKRDMKMMEXXXXXXXXXXXXXXXXXXKLMNENEQLKALIEDLKRKSNE 431
           HDSDS +EL+RVKR+MKMME                  KLMNENEQ KALIEDLKRKSNE
Sbjct: 288 HDSDSKLELERVKREMKMMEAALQGAARQAQAKADEIAKLMNENEQFKALIEDLKRKSNE 347

Query: 432 AEVESLREEYHQRVTTLERRIYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGE 491
           AEVESLREEYHQRV+TLER++YALTKERDTLRREQNKKSDAAALLKEKDEII QVMAEGE
Sbjct: 348 AEVESLREEYHQRVSTLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIITQVMAEGE 407

Query: 492 ELSKKQAAQESTIRKLRAQIRDFEEEKKGLTTKLQIEENKVESIKRDKTATEKLLQETIE 551
           ELSKKQA QESTIRKLRAQIRD EEEKKGLTTKLQ+EENKVESIKRDKTATEKLLQETIE
Sbjct: 408 ELSKKQATQESTIRKLRAQIRDLEEEKKGLTTKLQVEENKVESIKRDKTATEKLLQETIE 467

Query: 552 KHQNELAAQKEYYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLVQTLEEL 611
           KHQNELA QKEYY                                      MLVQ LEEL
Sbjct: 468 KHQNELAVQKEYYTNALAAAKESEALAEARANNEARTELESRLREAEERESMLVQALEEL 527

Query: 612 RQTLSRKEQQAVFKEDMLHRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQXX 671
           RQTLSRKEQQAVFKEDML RDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQ  
Sbjct: 528 RQTLSRKEQQAVFKEDMLCRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQDS 587

Query: 672 XXXXXXXXXXXXXSLNSRLQEAEAKAATSEERERSVNERLSQTLSRINVLEAQISCLRAE 731
                        +LNSRLQEAEAKAAT+EERERSVN+RLSQTLSRINVLEAQISCLRAE
Sbjct: 588 NARRAEAWAAVERTLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAE 647

Query: 732 QTQLSRTLEKERQRAAESRQEYLAAKEEADTHEGRVRQLEEDIRDLRQKHKQELQEVLMH 791
           QTQLSRTLEKERQRAAESRQEYLAAKEEADT EGR RQ EE+IRD+RQKHKQELQE L+H
Sbjct: 648 QTQLSRTLEKERQRAAESRQEYLAAKEEADTQEGRARQFEEEIRDIRQKHKQELQEALIH 707

Query: 792 RELLQQEIEKEKAARADLERTARVHSA----QTPTTKLNSAFENGNLSRKVXXXXXXXXX 847
           RELLQQEIEKEKAAR+DLERT R HSA    QT TTK NSAFENGNLSRK+         
Sbjct: 708 RELLQQEIEKEKAARSDLERTVRAHSAPSSEQTSTTKHNSAFENGNLSRKLSTASSLGSM 767

Query: 848 XXXHFLQASLDSSDSYSERR---ELSMSPYYMKSMTPSSFEAALRQKEGELASYMSRLAS 904
              +FLQASLDSSDS SERR   ELSMSPYYMKSMTPSSFEAALRQKEGELASYMSRLAS
Sbjct: 768 EESYFLQASLDSSDSSSERRNPGELSMSPYYMKSMTPSSFEAALRQKEGELASYMSRLAS 827

Query: 905 LESIRDSLADELVKLTAQCEKLRAEAAVLPGLRSELEALRRRHSAAXXXXXXXXXXXXXX 964
           LESIRDSLA+ELVKLTAQCEKLR E AVLPGL+SELEALRRRHSAA              
Sbjct: 828 LESIRDSLAEELVKLTAQCEKLRGEVAVLPGLKSELEALRRRHSAALELMGERDEELEEL 887

Query: 965 RADIVDLKEMYREQVNLLVNKIQVMGSS 992
           RADIVDLKEMYREQVNLLVNKIQ+M SS
Sbjct: 888 RADIVDLKEMYREQVNLLVNKIQIMSSS 915


>Medtr2g043010.1 | viral A-type inclusion protein, putative | LC |
           chr2:18729229-18725719 | 20130731
          Length = 317

 Score =  180 bits (457), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 126/171 (73%), Gaps = 11/171 (6%)

Query: 323 ERNLES----SDAVSDLVSHENEPTIEENETDHIANHVELDMKEQHLSSVGDMHDSDSAV 378
           +RN ES    S+  S+LVSH+N  T++ENE  H AN+   D+KEQHLSS+ +M+DSDS +
Sbjct: 124 DRNFESLVLMSEVESNLVSHDNGSTVKENERGHPANN---DIKEQHLSSIKNMYDSDSIL 180

Query: 379 ELDRVKRDMKMMEXXXXXXXXXXXXXXXXXXKLMNENEQLKALIEDLKRKSNEAEVESLR 438
           EL+RVKR++KMME                  KLMNENE+ K LIEDL RKSNEAEVESLR
Sbjct: 181 ELERVKREIKMMEAALLGAARQAQAKADEIEKLMNENEEFKHLIEDLMRKSNEAEVESLR 240

Query: 439 EEYHQRVTTLERRIYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAE 489
               Q+V+TLER++ ALTKERDTLRREQ+KKSD+ ALLKEKDEIINQVM E
Sbjct: 241 ----QKVSTLERKVDALTKERDTLRREQSKKSDSDALLKEKDEIINQVMDE 287



 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 1  MAWFNNAKTSWGNFPDLAGAVNKLQESVKSIEKNFDTALGFEEKSESS 48
          MAWF  AK + G+F + AGAVNKL ES K+IEKNFDTAL FEEK E S
Sbjct: 1  MAWFI-AKNAPGDFLNYAGAVNKLMESEKNIEKNFDTALSFEEKGEFS 47