Miyakogusa Predicted Gene

Lj3g3v0247260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0247260.1 Non Characterized Hit- tr|D8QWI2|D8QWI2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,54.79,0.000000000000001,Ribosomal_S17,Ribosomal protein
S17; no description,Nucleic acid-binding, OB-fold; Nucleic
acid-bind,CUFF.40389.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101770.1 | 30S ribosomal protein S17 | HC | chr2:43788721...   157   4e-39

>Medtr2g101770.1 | 30S ribosomal protein S17 | HC |
           chr2:43788721-43787926 | 20130731
          Length = 151

 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 8/142 (5%)

Query: 1   MWLLQLPPKLSNPFIHGT---PFTPLSKPATALTHHTHSPPSFLPSIKAMKSIQGKVVCS 57
           MWLLQLP  LS PF++G      T LSKP + L+    S P  LPSIKAMK+++GKVVC+
Sbjct: 1   MWLLQLPSTLSTPFLNGNNGVALTRLSKPTSTLSL---SQPQSLPSIKAMKTMEGKVVCA 57

Query: 58  ASDKTVAVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDIVQLTKTRPISKTKAFLA 117
            +DKTV+VEV RLAPHP            QAHDPEN FKVGD+VQL K RPISK K FLA
Sbjct: 58  TNDKTVSVEVTRLAPHPKYKKRIRMKKKYQAHDPENVFKVGDVVQLCKIRPISKNKTFLA 117

Query: 118 LPVPSR--GAKNKPSGDLPIPL 137
           +PVP+R  G  N  SGDL IPL
Sbjct: 118 VPVPARNSGKANNSSGDLDIPL 139