Miyakogusa Predicted Gene
- Lj3g3v0235130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0235130.1 Non Characterized Hit- tr|G7II20|G7II20_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,85.16,0,LEA_2,Late embryogenesis abundant protein, LEA-14;
seg,NULL,CUFF.40396.1
(311 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g101870.1 | late embryogenesis abundant protein | HC | chr... 438 e-123
Medtr6g087880.1 | late embryogenesis abundant protein | HC | chr... 255 4e-68
Medtr8g106580.1 | late embryogenesis abundant protein | HC | chr... 185 4e-47
Medtr6g081930.1 | late embryogenesis abundant protein | HC | chr... 177 2e-44
Medtr4g075730.1 | late embryogenesis abundant protein | HC | chr... 136 3e-32
Medtr0154s0010.1 | late embryogenesis abundant protein | HC | sc... 107 2e-23
Medtr8g086610.1 | late embryogenesis abundant protein | LC | chr... 102 4e-22
Medtr3g037650.1 | late embryogenesis abundant protein | LC | chr... 87 2e-17
Medtr4g075730.2 | late embryogenesis abundant protein | HC | chr... 85 1e-16
Medtr3g033530.1 | hypothetical protein | HC | chr3:10750798-1074... 67 1e-11
>Medtr2g101870.1 | late embryogenesis abundant protein | HC |
chr2:43826956-43829452 | 20130731
Length = 309
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/310 (70%), Positives = 240/310 (77%), Gaps = 1/310 (0%)
Query: 2 MLSAKSDSDVTSLAXXXXXXXXXXXVYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSH 61
MLSAKS+SD+TSLA VYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSH
Sbjct: 1 MLSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSH 60
Query: 62 PSFGRHSRNXXXXXXXXXXXXXXXXXXXXXXXNDKGWPECDVILEEGSYHEFEDRAFMRR 121
PSFGRHSRN NDKGWPEC VILEEGSY EFED +F RR
Sbjct: 61 PSFGRHSRNSSASRFSGIFRSSSGRKGSRKR-NDKGWPECGVILEEGSYREFEDMSFARR 119
Query: 122 CQGXXXXXXXXXXXXXXXXXXWGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTV 181
Q WGASRPFKAEV VKSL VHNLY+ EG+D TGVPTKILT+
Sbjct: 120 FQALIAVFTFLVVFTVFCLIIWGASRPFKAEVTVKSLAVHNLYVWEGTDHTGVPTKILTI 179
Query: 182 NSTLRMSIYNPATFFGIHVHSTPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKKV 241
NSTL M+IYNPATFFGIHVH++PINLV+SDIS+ATGELKK+YQPRKSHR+VSVNL G K+
Sbjct: 180 NSTLHMNIYNPATFFGIHVHTSPINLVYSDISIATGELKKHYQPRKSHRIVSVNLEGNKI 239
Query: 242 PLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSGSKPI 301
PLYGAGSTIT SQTG V V+L LKFEI SRG+VVGKLVRT+HHKEITCPLVI+S+G+KPI
Sbjct: 240 PLYGAGSTITVSQTGSVEVALVLKFEIRSRGDVVGKLVRTRHHKEITCPLVINSAGTKPI 299
Query: 302 KFKKNSCTYD 311
KFKKNSCTY+
Sbjct: 300 KFKKNSCTYE 309
>Medtr6g087880.1 | late embryogenesis abundant protein | HC |
chr6:33066104-33069639 | 20130731
Length = 307
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 186/313 (59%), Gaps = 11/313 (3%)
Query: 3 LSAKSDSDVTSLAXXXXXXXXXXXVYYVQSPSRDS-HDGDKSSSMQATPISNSPMESPSH 61
+ K+DSDVTS YYVQSPSR+S HDGDKSS+MQ SPM+SPSH
Sbjct: 1 MHIKTDSDVTSFDPSSPRSQKQTP-YYVQSPSRESSHDGDKSSTMQP-----SPMDSPSH 54
Query: 62 PSFGRHSRNXXXXXXXXXXXXXXXXXXXXXXXNDKGWPECDVILEEGSYHEFEDRAFM-- 119
S+G HSR NDKGW VI EE + D
Sbjct: 55 QSYGHHSRASSSSRISGGYNSSFLGRKVNRKVNDKGWIGSKVIEEENGGYGDFDGDGNGV 114
Query: 120 -RRCQGXXXXXXXXXXXXXXXXXXWGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKI 178
RR Q W AS +K +++VKSLTVHN Y GEGSD TGVPTK+
Sbjct: 115 SRRVQFFVAVVGFVLVFSLFCFIIWAASLHYKPQLSVKSLTVHNFYFGEGSDVTGVPTKM 174
Query: 179 LTVNSTLRMSIYNPATFFGIHVHSTPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVG 238
LTVN ++RM ++NPATFFGI+V S +NL++SD++VATGELKKY+Q RKS R VSVN+ G
Sbjct: 175 LTVNCSMRMLVHNPATFFGIYVSSKSVNLMYSDLTVATGELKKYHQQRKSRRTVSVNIQG 234
Query: 239 KKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSGS 298
KVPLYGAG+ + S +SL L FE+ SRGNVVGKLVRTKH + ++C + +D +
Sbjct: 235 SKVPLYGAGADVASSVDN-GKISLTLVFEVKSRGNVVGKLVRTKHTQRVSCSIAVDPHNN 293
Query: 299 KPIKFKKNSCTYD 311
K IK K+N C Y+
Sbjct: 294 KYIKLKENECRYN 306
>Medtr8g106580.1 | late embryogenesis abundant protein | HC |
chr8:44974833-44973007 | 20130731
Length = 296
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 167/313 (53%), Gaps = 21/313 (6%)
Query: 3 LSAKSDSDVTSLAXXXXXXXXXXXVYYVQSPSRDSHDGDKSS-SMQATPISNSPMESPSH 61
+ K+DS+VTSL YYVQSPS HDG+K++ S +TP+ SPM S
Sbjct: 1 MHTKTDSEVTSLDASSTTRSPRRPAYYVQSPS---HDGEKTTTSFHSTPVI-SPMGS--- 53
Query: 62 PSFGRHSRNXXXXXXXXXXXXXXXXXXXXXXXNDKGWPECDVILEEGSYHEFEDR-AFMR 120
N K W E DVI EEG + + + R
Sbjct: 54 ---------PPHSHSSSSRFSGSRKLNNNHRSNTKPWKEIDVIEEEGLLNNQDHHHSLSR 104
Query: 121 RCQGXXXXXXXXXXXXXXXXXXWGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILT 180
R WGASRP K V +KS+ ++ + GSD TGV T ++T
Sbjct: 105 RWYFLAFILGFFLLFTLFSLILWGASRPMKPHVMIKSIKFEHVRVQAGSDATGVATDMIT 164
Query: 181 VNSTLRMSIYNPATFFGIHVHSTPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKK 240
VN+T++ + N TFFG+HV STP++L +S+I + TG +KK+YQ R+S R+VSV ++G K
Sbjct: 165 VNATVKFTYRNKGTFFGVHVSSTPLDLSYSEIVIGTGNMKKFYQSRRSQRLVSVAVMGSK 224
Query: 241 VPLYGAGSTITESQTGV--VVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSGS 298
+PLYG+G++++ S TG+ + V LKL FEI SR V+GKLV+ K++K++ C +V D
Sbjct: 225 IPLYGSGASLS-STTGMPTLPVPLKLSFEIRSRAYVLGKLVKPKYYKKVHCSVVFDPKKI 283
Query: 299 KPIKFKKNSCTYD 311
K SCTYD
Sbjct: 284 NVSVSLKKSCTYD 296
>Medtr6g081930.1 | late embryogenesis abundant protein | HC |
chr6:30580513-30584032 | 20130731
Length = 294
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 161/296 (54%), Gaps = 41/296 (13%)
Query: 27 VYYVQSPSRDSHDGDKS--SSMQATPISNSPMESPSHPSFG-------RHSRNXXXXXXX 77
+YYVQSPS HDG+K+ +S +TP+++ S S +HS N
Sbjct: 29 LYYVQSPS---HDGEKTVTTSFHSTPVASPHHSSSSTHFSASKKDQQHQHSVNP------ 79
Query: 78 XXXXXXXXXXXXXXXXNDKGWPECDVILEEGSYHEFEDRAFMRRCQGXXXXXXXXXXXXX 137
W DVI EEG + + + RRC
Sbjct: 80 --------------------WKHIDVIEEEGFLEKERNGGYSRRCYFLAFVVGFFVLFSL 119
Query: 138 XXXXXWGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFG 197
WGASRP K ++ +KS+ ++ + GSD TGV T ++T+NSTL+ + N TFFG
Sbjct: 120 FSLILWGASRPMKPKIVIKSIKFDHVTVQAGSDSTGVATDMITMNSTLKFTYRNTGTFFG 179
Query: 198 IHVHSTPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGV 257
+HV +TP+ L +SDI +A+G +K+++Q R+SHR+VSV ++G KVPLYG+G++++ S TG+
Sbjct: 180 VHVSATPLELSYSDIVIASGNMKEFHQSRRSHRLVSVAVMGSKVPLYGSGASLS-STTGM 238
Query: 258 --VVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSGSKPIKFKKNSCTYD 311
+ V L L F + SR NV+G LV+ K++K I C + +D + KNSCTYD
Sbjct: 239 PTLPVPLNLNFVMRSRANVLGNLVKHKYYKRIQCSITLDPKKLGALVSLKNSCTYD 294
>Medtr4g075730.1 | late embryogenesis abundant protein | HC |
chr4:28960090-28965957 | 20130731
Length = 318
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 101/154 (65%), Gaps = 3/154 (1%)
Query: 143 WGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFGIHVHS 202
WGAS+ +K V +KS+ NL + G+D TGVPT +L++NST+R+ NPATFFG+HV S
Sbjct: 147 WGASKSYKPRVILKSIVFENLNVQSGNDGTGVPTDMLSLNSTVRILYRNPATFFGVHVTS 206
Query: 203 TPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQT---GVVV 259
TP+ L + + +A+G+++++YQ RKS R ++V + G +VPLYG S + S T V
Sbjct: 207 TPMQLSYYQLRLASGQIQEFYQSRKSQRKLAVVVHGYQVPLYGGVSVLGNSNTEHINTVA 266
Query: 260 VSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVI 293
+ + L FE+ SR ++G+LV++ + I C +
Sbjct: 267 LPMNLTFEVRSRAYILGRLVKSTFYHRIRCSITF 300
>Medtr0154s0010.1 | late embryogenesis abundant protein | HC |
scaffold0154:1-1407 | 20130731
Length = 136
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 178 ILTVNSTLRMSIYNPATFFGIHVHSTPINLVFSDISVATGELKKYYQPRKSHRMVSVNLV 237
++++NST++M+ N ATFFG+HV STP++L + +++ATG + K+YQ RKS R + V +
Sbjct: 1 MVSMNSTVKMTFRNTATFFGVHVASTPLDLNYYQLTLATGNMPKFYQSRKSQRSIKVMVK 60
Query: 238 GKKVPLYGAGSTI-TESQTGVVVVSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVID-S 295
G +PLYG G+ + T + + V V L L + S+ V+G LV+ K +K+I C L++D
Sbjct: 61 GSHIPLYGGGARLNTVNGSPVEPVPLTLNIMVRSKAYVLGALVKPKFNKKIECALIMDPK 120
Query: 296 SGSKPIKFKKNSCTYD 311
KPI+ N CTY+
Sbjct: 121 KMGKPIRL-TNKCTYE 135
>Medtr8g086610.1 | late embryogenesis abundant protein | LC |
chr8:35948368-35945564 | 20130731
Length = 279
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 100/172 (58%), Gaps = 7/172 (4%)
Query: 143 WGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFGIHVHS 202
W R FK ++++ L + G+D T VPT +L++NST+ M NPAT+FG+HV S
Sbjct: 110 WAVGRSFKPRANLENIVFKKLDVQFGNDRTEVPTYLLSLNSTITMMYTNPATYFGVHVTS 169
Query: 203 TPINLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKKVPLYGAGSTI---TESQTGVVV 259
T + L + D+++A+G++++++Q KS + + V + +VPLYG S + T V
Sbjct: 170 TLLQLRYYDLTLASGQMQEFHQSSKSQQKLVVFVSADQVPLYGGISILGNDTIENMNNVA 229
Query: 260 VSLKLKFEIVSRGNVVGKLVRTKHHKEITCPLVID-SSGSKPIKFKKNSCTY 310
+++ + FE+ S+ +++G V + ++ I CP+ + KP+ +SC Y
Sbjct: 230 MAMNITFELKSKADILG--VLSTFYQTIGCPITFHVNQLGKPLSL-IDSCVY 278
>Medtr3g037650.1 | late embryogenesis abundant protein | LC |
chr3:13829626-13832376 | 20130731
Length = 273
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 143 WGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFGIHVHS 202
W SR K ++ ++S+T I EG D G T ++T NS+L+++ N ATF GIHV S
Sbjct: 108 WAVSRQ-KPDLFLESITFDRYSIEEGIDHYGFNTSMVTTNSSLKLTFTNTATFSGIHVTS 166
Query: 203 TPINLV-FSDISVATGELKKYYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVS 261
P+ + ++ + +ATG + +YQ RKS R + V + G ++P++ A ++ +
Sbjct: 167 IPLEMKNYNQLPIATGNIPNFYQRRKSARSIDVKVEGSQIPVHIAPDDYVLGES----IP 222
Query: 262 LKLKFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSG-SKPIKFKKNSCTYD 311
L L + S+ NV+ LV K + I C L +D+ PI T+D
Sbjct: 223 LTLNMIVNSKANVLWILVTHKFNMNIECSLYMDTKKMGVPIPLTNTCKTFD 273
>Medtr4g075730.2 | late embryogenesis abundant protein | HC |
chr4:28960090-28962545 | 20130731
Length = 236
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%)
Query: 143 WGASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFGIHVHS 202
WGAS+ +K V +KS+ NL + G+D TGVPT +L++NST+R+ NPATFFG+HV S
Sbjct: 147 WGASKSYKPRVILKSIVFENLNVQSGNDGTGVPTDMLSLNSTVRILYRNPATFFGVHVTS 206
Query: 203 TPINLVFSDISVATGE 218
TP+ L + + +A+G+
Sbjct: 207 TPMQLSYYQLRLASGQ 222
>Medtr3g033530.1 | hypothetical protein | HC |
chr3:10750798-10747558 | 20130731
Length = 350
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 145 ASRPFKAEVAVKSLTVHNLYIGEGSDFTGVPTKILTVNSTLRMSIYNPATFFGIHVHSTP 204
A++P +++ + + +GEG D TGV TKILT N ++ + + N + FFG+H+
Sbjct: 182 ATKPPTPKISFEIARIPEFKLGEGVDRTGVTTKILTCNCSMNLIVENKSRFFGLHIRPPK 241
Query: 205 INLVFSDISVATGELKKYYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVSLKL 264
+++ FS + A + Y + + L K P+YGAG ++ + + + +
Sbjct: 242 MDMKFSILPFAFSNGPELYA-ESGLTVFPLQLEVKNKPMYGAGRSMEDMLDSGRGLPILI 300
Query: 265 KFEIVSRGNVVGKLVRTKHHKEITCPLVIDSSGSK 299
+ + S VV LV+ K H + C +V+ + +K
Sbjct: 301 QVTLSSSFEVVPALVKPKFHHRVECIVVLKKTYNK 335