Miyakogusa Predicted Gene

Lj3g3v0201900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0201900.2 tr|Q5VRY6|Q5VRY6_ORYSJ Os01g0183400 protein
OS=Oryza sativa subsp. japonica GN=P0489A01.12 PE=4
SV=1,38.4,0.00000000002,SUBFAMILY NOT NAMED,NULL; HISTONE-LIKE
TRANSCRIPTION FACTOR CCAAT-RELATED,NULL;
CBFD_NFYB_HMF,Transc,CUFF.40346.2
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085430.1 | nuclear transcription factor Y protein | HC | ...   136   6e-33
Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...    48   3e-06
Medtr3g012030.2 | negative cofactor 2 transcriptional co-repress...    47   3e-06
Medtr8g041420.1 | negative cofactor 2 transcriptional co-repress...    47   3e-06

>Medtr3g085430.1 | nuclear transcription factor Y protein | HC |
           chr3:38611793-38612780 | 20130731
          Length = 173

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 91/128 (71%), Gaps = 4/128 (3%)

Query: 9   EEEKARS--PELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDK 66
           EEEK  S  PE P+ RVKKI+T+DK+V+RVSSEALFLVS ST+LFL+ LAE SA++AI+K
Sbjct: 21  EEEKTLSFEPEFPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIEK 80

Query: 67  KRKTVNLEHLRIAVKRHRPTSDFLLDSLPMPLPAHXXXXXXXXXXXXXXXXGVGSTRRID 126
           KRKTV LEH+RIAVKR+RP SDFLLDSLP+P                     VG TRRID
Sbjct: 81  KRKTVKLEHMRIAVKRNRPISDFLLDSLPVP-SETVKSDKPAAVVDRPKSVSVG-TRRID 138

Query: 127 HFFRKSDA 134
             FRKS  
Sbjct: 139 QIFRKSGG 146


>Medtr5g088760.2 | negative cofactor 2 transcriptional
          co-repressor, putative | HC | chr5:38540164-38543606 |
          20130731
          Length = 302

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 18 LPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLR 77
           P  R+KKIM  D+++ +++     LVS + +LFL+ L + + +I + +  KTVN  HL+
Sbjct: 9  FPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLK 68

Query: 78 IAVKRHRPTSDFLLDSL 94
            ++      DFL D++
Sbjct: 69 QCIQTCN-VFDFLKDTV 84


>Medtr3g012030.2 | negative cofactor 2 transcriptional
          co-repressor, putative | HC | chr3:3186291-3181373 |
          20130731
          Length = 292

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 18 LPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLR 77
           P  R+KKIM  D++V +++     LVS + +LFL+ L + + +I + +  KT+N  HL+
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLK 68

Query: 78 IAVKRHRPTSDFLLD 92
            V+ +    DFL D
Sbjct: 69 HCVQSYN-VFDFLRD 82


>Medtr8g041420.1 | negative cofactor 2 transcriptional
          co-repressor, putative | HC | chr8:15595067-15590978 |
          20130731
          Length = 305

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 18 LPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLR 77
           P  R+KKIM  D++V +++     LVS + +LFL+ L + + +I + +  KT+N  HL+
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLK 68

Query: 78 IAVKRHRPTSDFLLD 92
            V+ +    DFL D
Sbjct: 69 HCVQSYN-VFDFLKD 82