Miyakogusa Predicted Gene

Lj3g3v0180790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0180790.1 Non Characterized Hit- tr|B9FAR0|B9FAR0_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,48.91,4e-18,seg,NULL; LEA_2,Late embryogenesis abundant protein,
LEA-14,CUFF.40342.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g102080.1 | late embryogenesis abundant protein | HC | chr...   216   9e-57
Medtr4g012450.1 | late embryogenesis abundant (LEA) hydroxyproli...   126   1e-29
Medtr6g086455.1 | late embryogenesis abundant protein | HC | chr...   111   4e-25
Medtr8g028475.1 | late embryogenesis abundant protein | HC | chr...    52   5e-07

>Medtr2g102080.1 | late embryogenesis abundant protein | HC |
           chr2:43926025-43927347 | 20130731
          Length = 200

 Score =  216 bits (551), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 122/155 (78%)

Query: 45  YIFWPTDPDXXXXXXXXXXXXXHRFPRVTVDISMILTLMVSNAGVYSIDFGAVDVVVAYR 104
           YIF+P+DP              HR P +TVDISM+ TL V N  VYS+DFGAVDV V+YR
Sbjct: 2   YIFYPSDPYLKIVRLKLKKIKVHRVPHITVDISMLFTLRVQNVDVYSMDFGAVDVAVSYR 61

Query: 105 GKALGHVTSEHGHVSARGSSHVDADVEFEGIGVVPDMVMLLEDVAKGMVPFDTVSEVRGQ 164
           GK LGHVTS++GHV A GSS VDAD EF GIGV+P++V+LLED+AKGMVPFDTVS+VRG+
Sbjct: 62  GKPLGHVTSKNGHVRAMGSSFVDADAEFSGIGVLPEIVLLLEDLAKGMVPFDTVSQVRGK 121

Query: 165 MGLLFLHFPMQAKQSCEILVSTLNHTIIRQHCLRE 199
           MG+LF +FP++AK SC +LVST+N TIIRQHCL E
Sbjct: 122 MGILFFYFPIKAKLSCAVLVSTINQTIIRQHCLYE 156


>Medtr4g012450.1 | late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family protein,
           putative | HC | chr4:3300288-3298783 | 20130731
          Length = 197

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 3/187 (1%)

Query: 15  RRNHQNSVVFTTRRRQVTCTAGILLFLTTAYIFWPTDPDXXXXXXXXXXXXXHRFPRVTV 74
           ++N QN +V       +     + L +T  +  WP +P+             H  P ++V
Sbjct: 5   KQNTQNYLVIPRCCVFLLWIVVLALCITALFFLWPLNPEIEMESLIVKRAKVHPLPPLSV 64

Query: 75  DISMILTLMVSNAGVYSIDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDADVEFEG 134
           D+S+ +T+ + N  +Y ++   VDV + YRG  LGHV +   HV   GS HV  ++EF G
Sbjct: 65  DVSLSVTVKIHNKVLYWMELAEVDVGIKYRGHKLGHVETRGWHVKGWGSEHVFGELEFGG 124

Query: 135 IGVVPDMVMLLEDVAKGMVPFDTVSEVRGQMGLLFLHFP--MQAKQSCEILVSTLNHTII 192
           +   PD+  L++D+AK  V F T   V G +GL   HFP   + K SCE+LV+T NHTI+
Sbjct: 125 LP-SPDVAHLMQDLAKKRVHFHTAVGVVGNLGLFAFHFPKIFKVKLSCEVLVNTKNHTIV 183

Query: 193 RQHCLRE 199
            QHC+ +
Sbjct: 184 HQHCVEK 190


>Medtr6g086455.1 | late embryogenesis abundant protein | HC |
           chr6:32516778-32512401 | 20130731
          Length = 262

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 6/176 (3%)

Query: 26  TRRRQVTCTAGILLFLTTAYIF-WPTDPDXXXXXXXXXXXXXHRFPRVTVDISMILTLMV 84
             RR    +A +LLFL  A  F +P+DP+                P+  +D+S  L L +
Sbjct: 59  NNRRNWIISATVLLFLAAAIFFLYPSDPEIHLARIQLNHIAIKANPKPILDLSFSLKLKI 118

Query: 85  SNAGVYSIDFGAVDVVVAYRGKALGHVTS-EHGHVSARGSSHVDADVEFEGIGVVPDMVM 143
            N   +S+ +  +DV + YRG+ +G V+S   G + ARGS +VD  +  +   V+ D   
Sbjct: 119 RNRDFFSVAYDKLDVSLGYRGREIGTVSSVGGGKIRARGSDYVDVVLSIDAFEVIYDAFY 178

Query: 144 LLEDVAKGMVPFDTVSEVRGQMGLLFLHFPMQAKQSCEILVSTLNHTIIRQHCLRE 199
           L+ED+ KG++ FDTVS+V G++G +    P++A  SCE+ V+     ++RQ+C  E
Sbjct: 179 LIEDMVKGVIVFDTVSKVDGKLGFI----PLKATVSCEVYVNIYQQMVVRQNCYPE 230


>Medtr8g028475.1 | late embryogenesis abundant protein | HC |
           chr8:10813944-10812975 | 20130731
          Length = 219

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 70  PRVTVDISMILTLMVSNAGVYSIDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDAD 129
           P+V ++++M++ + + N  + SI  G     V YRG  +       G V A+ ++ ++  
Sbjct: 88  PQVKINMTMVVNMSIKNDNIASIKLGNSTTTVYYRGITVADAVIPPGLVKAKKTTRLNVT 147

Query: 130 VEFEGIGVV--PDMVMLLEDVAKGMVPFDTVSEVRGQMGLLFLHFPMQAKQSCEILVSTL 187
           +E     +V  P+   LL DV +G +  +T S + G++ +LF+   ++ K +C + ++  
Sbjct: 148 IEVMADRLVSSPN---LLGDVVQGEMVMNTYSIIPGRVKILFIKKHVEMKMNCTMTINIS 204

Query: 188 NHTIIRQHC 196
              I    C
Sbjct: 205 KRGIENMTC 213