Miyakogusa Predicted Gene

Lj3g3v0160740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0160740.1 tr|G7II52|G7II52_MEDTR Regulator of telomere
elongation helicase OS=Medicago truncatula GN=MTR_2g102,71.28,0,no
description,Helicase-like, DEXD box c2 type; DEAD-like helicases
superfamily,Helicase, superfamil,CUFF.40337.1
         (479 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g102150.3 | regulator of telomere elongation helicase-like...   651   0.0  
Medtr2g102150.2 | regulator of telomere elongation helicase-like...   651   0.0  
Medtr2g102150.1 | regulator of telomere elongation helicase-like...   651   0.0  
Medtr1g026490.1 | fanconi anemia group J-like protein | HC | chr...   161   1e-39
Medtr0147s0060.1 | rad3-related DNA helicase family protein | HC...   108   9e-24
Medtr2g084735.1 | DNA repair helicase (rad3) | HC | chr2:3593377...    92   1e-18
Medtr2g084735.2 | DNA repair helicase (rad3) | HC | chr2:3593566...    92   1e-18

>Medtr2g102150.3 | regulator of telomere elongation helicase-like
           protein | HC | chr2:43966024-43954610 | 20130731
          Length = 1004

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/479 (66%), Positives = 368/479 (76%), Gaps = 20/479 (4%)

Query: 1   MPTYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWR 60
           MPTYKIRGIDVDFP++AYDSQLVYMDKV+QSLQ++ NALLESPTGTGKTLCLLCATLAWR
Sbjct: 1   MPTYKIRGIDVDFPYEAYDSQLVYMDKVMQSLQEESNALLESPTGTGKTLCLLCATLAWR 60

Query: 61  KSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRTSY 120
           KSL                 +  +  +  P  S+FPTIVYASRTHSQIRQV++ELKRTSY
Sbjct: 61  KSLGSFSTGMSIKTGDNGKTEVSSS-QSEPGASKFPTIVYASRTHSQIRQVIQELKRTSY 119

Query: 121 RPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVPENHKQRPT 180
           RPKM VLGSREQ CIHD+VK L+G++QTNACRF CRR  K                    
Sbjct: 120 RPKMTVLGSREQFCIHDEVKLLRGRTQTNACRFACRRRAKQ------------------- 160

Query: 181 RNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKVVDIVFAPYN 240
           + RC HF +V  YLK +P++GE+PVDIEDLVNIG + GPCPY+L+KELHK VDI+FAPYN
Sbjct: 161 KRRCNHFNQVLDYLKQNPNLGEEPVDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYN 220

Query: 241 YLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLTTCISDAHRCIGLAK 300
           YLIDRG RK+L  SW  SILIFDEAHNLESICADAASFDL S LLT CIS+A  C+ L  
Sbjct: 221 YLIDRGKRKALQISWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAQSCVDLLI 280

Query: 301 GRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVPIESKELGYTKPGPYIYALLADLNIRH 360
            RR+KS DK +NPDDF                V IESKELG+TKPGPYI+ LLADLNI H
Sbjct: 281 ERRNKSNDKSQNPDDFAILKALLLKLEKRIAEVHIESKELGFTKPGPYIFELLADLNITH 340

Query: 361 ETASKLTDILEAASTLVEEDNQENSTGNICRLDSIREILDLVFRDGETTHAKYYRVHVRE 420
           +TA KL  I+  ASTL+EED+QE ST NICRL+++++ILD++FRDG T+HAKYYRVHV+E
Sbjct: 341 KTAPKLKSIVTDASTLLEEDSQEKSTSNICRLETMKDILDIIFRDGRTSHAKYYRVHVKE 400

Query: 421 VEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMESFAQELKLD 479
            EA AANGS GKVSRTLSWWCFNPGIA+E F K GV SIILTSGTLSP++SFA+ELKLD
Sbjct: 401 AEAWAANGSLGKVSRTLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLD 459


>Medtr2g102150.2 | regulator of telomere elongation helicase-like
           protein | HC | chr2:43966024-43954610 | 20130731
          Length = 1004

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/479 (66%), Positives = 368/479 (76%), Gaps = 20/479 (4%)

Query: 1   MPTYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWR 60
           MPTYKIRGIDVDFP++AYDSQLVYMDKV+QSLQ++ NALLESPTGTGKTLCLLCATLAWR
Sbjct: 1   MPTYKIRGIDVDFPYEAYDSQLVYMDKVMQSLQEESNALLESPTGTGKTLCLLCATLAWR 60

Query: 61  KSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRTSY 120
           KSL                 +  +  +  P  S+FPTIVYASRTHSQIRQV++ELKRTSY
Sbjct: 61  KSLGSFSTGMSIKTGDNGKTEVSSS-QSEPGASKFPTIVYASRTHSQIRQVIQELKRTSY 119

Query: 121 RPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVPENHKQRPT 180
           RPKM VLGSREQ CIHD+VK L+G++QTNACRF CRR  K                    
Sbjct: 120 RPKMTVLGSREQFCIHDEVKLLRGRTQTNACRFACRRRAKQ------------------- 160

Query: 181 RNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKVVDIVFAPYN 240
           + RC HF +V  YLK +P++GE+PVDIEDLVNIG + GPCPY+L+KELHK VDI+FAPYN
Sbjct: 161 KRRCNHFNQVLDYLKQNPNLGEEPVDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYN 220

Query: 241 YLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLTTCISDAHRCIGLAK 300
           YLIDRG RK+L  SW  SILIFDEAHNLESICADAASFDL S LLT CIS+A  C+ L  
Sbjct: 221 YLIDRGKRKALQISWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAQSCVDLLI 280

Query: 301 GRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVPIESKELGYTKPGPYIYALLADLNIRH 360
            RR+KS DK +NPDDF                V IESKELG+TKPGPYI+ LLADLNI H
Sbjct: 281 ERRNKSNDKSQNPDDFAILKALLLKLEKRIAEVHIESKELGFTKPGPYIFELLADLNITH 340

Query: 361 ETASKLTDILEAASTLVEEDNQENSTGNICRLDSIREILDLVFRDGETTHAKYYRVHVRE 420
           +TA KL  I+  ASTL+EED+QE ST NICRL+++++ILD++FRDG T+HAKYYRVHV+E
Sbjct: 341 KTAPKLKSIVTDASTLLEEDSQEKSTSNICRLETMKDILDIIFRDGRTSHAKYYRVHVKE 400

Query: 421 VEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMESFAQELKLD 479
            EA AANGS GKVSRTLSWWCFNPGIA+E F K GV SIILTSGTLSP++SFA+ELKLD
Sbjct: 401 AEAWAANGSLGKVSRTLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLD 459


>Medtr2g102150.1 | regulator of telomere elongation helicase-like
           protein | HC | chr2:43966024-43954610 | 20130731
          Length = 1004

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/479 (66%), Positives = 368/479 (76%), Gaps = 20/479 (4%)

Query: 1   MPTYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWR 60
           MPTYKIRGIDVDFP++AYDSQLVYMDKV+QSLQ++ NALLESPTGTGKTLCLLCATLAWR
Sbjct: 1   MPTYKIRGIDVDFPYEAYDSQLVYMDKVMQSLQEESNALLESPTGTGKTLCLLCATLAWR 60

Query: 61  KSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRTSY 120
           KSL                 +  +  +  P  S+FPTIVYASRTHSQIRQV++ELKRTSY
Sbjct: 61  KSLGSFSTGMSIKTGDNGKTEVSSS-QSEPGASKFPTIVYASRTHSQIRQVIQELKRTSY 119

Query: 121 RPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVPENHKQRPT 180
           RPKM VLGSREQ CIHD+VK L+G++QTNACRF CRR  K                    
Sbjct: 120 RPKMTVLGSREQFCIHDEVKLLRGRTQTNACRFACRRRAKQ------------------- 160

Query: 181 RNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKVVDIVFAPYN 240
           + RC HF +V  YLK +P++GE+PVDIEDLVNIG + GPCPY+L+KELHK VDI+FAPYN
Sbjct: 161 KRRCNHFNQVLDYLKQNPNLGEEPVDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYN 220

Query: 241 YLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLTTCISDAHRCIGLAK 300
           YLIDRG RK+L  SW  SILIFDEAHNLESICADAASFDL S LLT CIS+A  C+ L  
Sbjct: 221 YLIDRGKRKALQISWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAQSCVDLLI 280

Query: 301 GRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVPIESKELGYTKPGPYIYALLADLNIRH 360
            RR+KS DK +NPDDF                V IESKELG+TKPGPYI+ LLADLNI H
Sbjct: 281 ERRNKSNDKSQNPDDFAILKALLLKLEKRIAEVHIESKELGFTKPGPYIFELLADLNITH 340

Query: 361 ETASKLTDILEAASTLVEEDNQENSTGNICRLDSIREILDLVFRDGETTHAKYYRVHVRE 420
           +TA KL  I+  ASTL+EED+QE ST NICRL+++++ILD++FRDG T+HAKYYRVHV+E
Sbjct: 341 KTAPKLKSIVTDASTLLEEDSQEKSTSNICRLETMKDILDIIFRDGRTSHAKYYRVHVKE 400

Query: 421 VEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMESFAQELKLD 479
            EA AANGS GKVSRTLSWWCFNPGIA+E F K GV SIILTSGTLSP++SFA+ELKLD
Sbjct: 401 AEAWAANGSLGKVSRTLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLD 459


>Medtr1g026490.1 | fanconi anemia group J-like protein | HC |
           chr1:8631572-8617169 | 20130731
          Length = 1224

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 223/503 (44%), Gaps = 76/503 (15%)

Query: 4   YKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRN-----ALLESPTGTGKTLCLLCATLA 58
           Y I G+ V+FP+  Y SQ  +M +V+ +L + +N     ALLESPTG+GK+L LLC++LA
Sbjct: 17  YHIGGLPVEFPYQPYGSQFAFMGRVISTLNRAQNEGHSHALLESPTGSGKSLSLLCSSLA 76

Query: 59  WRKSLXXXXXXXXXXXXXXXXD--KSDAGWKVTPPPSQF-----PTIVYASRTHSQIRQV 111
           W++                       +    + P   +      PTI YASRTHSQI Q+
Sbjct: 77  WQQHYKPTPPQTAADPLANGGGFLLDEVLLPLEPTNKKLKKKTVPTIYYASRTHSQITQL 136

Query: 112 VRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHV 171
           VREL++TSYR  M +L SR+  C +   K+++G+   +     C++  K           
Sbjct: 137 VRELRKTSYRVPMALLASRKHYCTN---KNIRGRENIDE---ECKQLLKDKVIGCPEFKS 190

Query: 172 PENHKQRPTRNR--CKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELH 229
            +  K  P+  +  C           N+ H      DIEDLV +G S   C YY ++ + 
Sbjct: 191 VQKVKAHPSLQKGGC-----------NEVH------DIEDLVKVGQSVKGCSYYAARSMS 233

Query: 230 KVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFD--------LT 281
               +VF PYNY+I+   R ++    + +I+IFDEAHN+E I  DA S D        L 
Sbjct: 234 NDAQLVFCPYNYIINPVIRGAMEVDIQGAIVIFDEAHNIEDISRDAGSVDIEEDTLDKLQ 293

Query: 282 SSLLTTCISDA-------HRCIGLAKGRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVP 334
             L   C SD            GL      K T   +   DF                  
Sbjct: 294 MELEQLCHSDIAIYLPLYEMTQGLTSWMEHKKTTLEKR--DFQHYVSCWTGDKAL----- 346

Query: 335 IESKELGYTKPGPYIYALLADLNIRHETASKLTDILEAASTLVEEDNQENSTGNICRLDS 394
              +EL         + +L       E A+K   +     T +EED    S  ++  L+ 
Sbjct: 347 ---QELEEANISKQCFPILL------ECATKAIKVY----TDLEEDEPHLSGMSVITLEG 393

Query: 395 IREILDLVF-RDGETTHAKYYRVHVREVEARAANGSKGKVSRTLSWWCFNPGIAMEVFPK 453
           +   L   F ++G  +H   Y++ ++    +    + G  + TLS WC NP         
Sbjct: 394 LFSSLSYFFSKNG--SHMLDYQLALQRTVRKHDRRASGNWTHTLSLWCLNPAAVFREVAD 451

Query: 454 LGVGSIILTSGTLSPMESFAQEL 476
           L + S+ILTSGTLSPM SF+ EL
Sbjct: 452 LSL-SVILTSGTLSPMMSFSSEL 473


>Medtr0147s0060.1 | rad3-related DNA helicase family protein | HC |
           scaffold0147:21230-15819 | 20130731
          Length = 907

 Score =  108 bits (271), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 98  IVYASRTHSQIRQVVRELKRTSYRPKM--VVLGSREQLCIHDQVKSLQGKSQTNACRFLC 155
           + + SRTHSQ+ Q V+EL++T +  +M  V LGSR+ LCI+ +V +L   S+ N      
Sbjct: 199 VYFCSRTHSQLSQFVKELRKTVFADEMGVVSLGSRKNLCINQEVLALGNSSRINERCLEL 258

Query: 156 RRGKKAXXXXXXXXHVPENHKQRPTRNRCKHFG--RVHGYLKNDPHVGEQ-PVDIEDLVN 212
           ++ KK               ++    + C      R+    +N+  V +Q P+DIEDL N
Sbjct: 259 QKKKKNDATKVKNLKAGTGARRTKASSGCPMLRKRRLQHEFRNE--VSQQGPLDIEDLAN 316

Query: 213 IGTSHGPCPYYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESIC 272
           +G + G CPYY S+ + + VD+V  PY  L+ +  R++L  + K +I+I DEAHNL    
Sbjct: 317 LGRTMGTCPYYGSRSMVRRVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNL---- 372

Query: 273 ADAASFDLTSSLLTTCISDAHRCI 296
           AD+      S L  + + + HR I
Sbjct: 373 ADSLINMYDSKLTLSQLENVHRHI 396



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 13 FPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAW 59
          FPF  Y  Q+ +M+ + QSL     ++LESPTGTGKT+ ++C+ L W
Sbjct: 17 FPFKPYSIQIDFMNALYQSLNHGGISMLESPTGTGKTMSVICSALQW 63


>Medtr2g084735.1 | DNA repair helicase (rad3) | HC |
           chr2:35933773-35944460 | 20130731
          Length = 845

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 142/323 (43%), Gaps = 60/323 (18%)

Query: 4   YKIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKS 62
           +KI  + V FP+D  Y  Q  YM ++ ++L  K + LLE PTGTGKT+ LL    ++  S
Sbjct: 89  FKIEEVTVYFPYDNIYPEQYAYMIELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYTLS 148

Query: 63  LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVREL------- 115
                                        P     ++Y +RT  ++ + + EL       
Sbjct: 149 ----------------------------KPQSPIKLIYCTRTVHEMEKTLAELRLLHDYM 180

Query: 116 -KRTSYRPKMVVLG--SREQLCIHDQVKSLQGKSQTNA-CRFLCRRGKKAXXXXXXXXHV 171
            K      KM+ LG  SR+ LC++++V + + +   +A CR L     +A         +
Sbjct: 181 VKCIGPSAKMLALGLSSRKNLCVNNKVLAAENRDSVDAGCRKLTASWVRA---------L 231

Query: 172 PENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKV 231
              +   P+    + + R        P V      ++DL   G   G CPY+L++ + + 
Sbjct: 232 AAENPDVPSCEFFEQYERAGSAAVLPPGV----YTLQDLRTFGKEKGWCPYFLARHMVQF 287

Query: 232 VDIVFAPYNYLIDRGYRKSLHFSWKK-SILIFDEAHNLESICADAASFDLTSSLLTTCIS 290
            ++V   Y YL+D      +    +K S+++FDEAHN++++C +A    L+ S+    + 
Sbjct: 288 ANVVVYSYQYLLDPKVAAIISKEMQKESVVVFDEAHNIDNVCIEA----LSVSVRRQTVD 343

Query: 291 DAHRCIGLAKGRRD--KSTDKPR 311
            A R I   +   D  K+TD  R
Sbjct: 344 GARRNINRMRQEIDKFKATDAGR 366


>Medtr2g084735.2 | DNA repair helicase (rad3) | HC |
           chr2:35935669-35944962 | 20130731
          Length = 759

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 142/323 (43%), Gaps = 60/323 (18%)

Query: 4   YKIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKS 62
           +KI  + V FP+D  Y  Q  YM ++ ++L  K + LLE PTGTGKT+ LL    ++  S
Sbjct: 3   FKIEEVTVYFPYDNIYPEQYAYMIELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYTLS 62

Query: 63  LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVREL------- 115
                                        P     ++Y +RT  ++ + + EL       
Sbjct: 63  ----------------------------KPQSPIKLIYCTRTVHEMEKTLAELRLLHDYM 94

Query: 116 -KRTSYRPKMVVLG--SREQLCIHDQVKSLQGKSQTNA-CRFLCRRGKKAXXXXXXXXHV 171
            K      KM+ LG  SR+ LC++++V + + +   +A CR L     +A         +
Sbjct: 95  VKCIGPSAKMLALGLSSRKNLCVNNKVLAAENRDSVDAGCRKLTASWVRA---------L 145

Query: 172 PENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKV 231
              +   P+    + + R        P V      ++DL   G   G CPY+L++ + + 
Sbjct: 146 AAENPDVPSCEFFEQYERAGSAAVLPPGV----YTLQDLRTFGKEKGWCPYFLARHMVQF 201

Query: 232 VDIVFAPYNYLIDRGYRKSLHFSWKK-SILIFDEAHNLESICADAASFDLTSSLLTTCIS 290
            ++V   Y YL+D      +    +K S+++FDEAHN++++C +A    L+ S+    + 
Sbjct: 202 ANVVVYSYQYLLDPKVAAIISKEMQKESVVVFDEAHNIDNVCIEA----LSVSVRRQTVD 257

Query: 291 DAHRCIGLAKGRRD--KSTDKPR 311
            A R I   +   D  K+TD  R
Sbjct: 258 GARRNINRMRQEIDKFKATDAGR 280