Miyakogusa Predicted Gene

Lj3g3v0140670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0140670.1 Non Characterized Hit- tr|I3S5E4|I3S5E4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.68,0,SYS1,Integral membrane protein SYS1-related;
SYS1,NULL,CUFF.40330.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011980.3 | integral membrane protein S (TGN-related) | HC...   220   3e-58
Medtr4g011980.2 | integral membrane protein S (TGN-related) | HC...    97   6e-21
Medtr4g011980.1 | integral membrane protein S (TGN-related) | HC...    97   6e-21

>Medtr4g011980.3 | integral membrane protein S (TGN-related) | HC |
           chr4:3183132-3180193 | 20130731
          Length = 152

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 137/152 (90%)

Query: 1   MFYGAVVWDPWLIVAQIVCLQCLYYITLGLFFTILVGTRVSRMSLVYFFDFATLTTSTIT 60
           MFYGAVVWDPWLIVAQIVCLQC+YYITLGL  T+LVGTRVSR+SLVYFFD+ T+TTST+T
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61  GWCVIASFLLTSIAGSVYMLYFIERAKKCLDFSATLYTIHLFICIVYGGWPSSIAWWAVN 120
           GWCV ASFLL+S AG+VYMLY IER+KKCLDF+AT+Y IHL ICIVYGGWPSSIAWW VN
Sbjct: 61  GWCVCASFLLSSAAGAVYMLYLIERSKKCLDFAATIYIIHLCICIVYGGWPSSIAWWIVN 120

Query: 121 VAGFAVMALLGECLCIRRELREIPITRFRSIV 152
             G A+MALLGE LCIRRELREIPI R+RS V
Sbjct: 121 GTGIALMALLGEYLCIRRELREIPIPRYRSNV 152


>Medtr4g011980.2 | integral membrane protein S (TGN-related) | HC
          | chr4:3183132-3182905 | 20130731
          Length = 75

 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 70/75 (93%)

Query: 1  MFYGAVVWDPWLIVAQIVCLQCLYYITLGLFFTILVGTRVSRMSLVYFFDFATLTTSTIT 60
          MFYGAVVWDPWLIVAQIVCLQC+YYITLGL  T+LVGTRVSR+SLVYFFD+ T+TTST+T
Sbjct: 1  MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61 GWCVIASFLLTSIAG 75
          GWCV ASFLL+S AG
Sbjct: 61 GWCVCASFLLSSAAG 75


>Medtr4g011980.1 | integral membrane protein S (TGN-related) | HC
          | chr4:3183132-3182905 | 20130731
          Length = 75

 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 70/75 (93%)

Query: 1  MFYGAVVWDPWLIVAQIVCLQCLYYITLGLFFTILVGTRVSRMSLVYFFDFATLTTSTIT 60
          MFYGAVVWDPWLIVAQIVCLQC+YYITLGL  T+LVGTRVSR+SLVYFFD+ T+TTST+T
Sbjct: 1  MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61 GWCVIASFLLTSIAG 75
          GWCV ASFLL+S AG
Sbjct: 61 GWCVCASFLLSSAAG 75