Miyakogusa Predicted Gene

Lj3g3v0139580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139580.1 tr|B6VCL2|B6VCL2_TRIUA Expressed protein
(Fragment) OS=Triticum urartu PE=4 SV=1,39.2,3e-18,CASC3/Barentsz
eIF4AIII binding,Btz domain; Btz,Btz domain; seg,NULL;
coiled-coil,NULL,CUFF.40328.1
         (569 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011920.2 | CASC3/barentsz eIF4AIII-binding protein | HC |...   402   e-112
Medtr4g011920.1 | CASC3/barentsz eIF4AIII-binding protein | HC |...   398   e-111
Medtr1g051515.1 | hypothetical protein | LC | chr1:20426504-2042...    67   5e-11

>Medtr4g011920.2 | CASC3/barentsz eIF4AIII-binding protein | HC |
           chr4:3118579-3115882 | 20130731
          Length = 571

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/433 (57%), Positives = 286/433 (66%), Gaps = 33/433 (7%)

Query: 149 PFSVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEITFQDRPYK 208
           PF+VPTAGAFYMHDDRFRDN+             LWESKD++KWGHDKFEEI+ QDR Y 
Sbjct: 145 PFAVPTAGAFYMHDDRFRDNSNARQRRMHGGRR-LWESKDDKKWGHDKFEEISVQDRRYD 203

Query: 209 EGRRPSRGNFRGRGKTRGVARGGYVRGDRKSYDDRD---------------NQNQXXXXX 253
           E RRPSRGNFRGRG+TRG  RGG+VRG+R+ Y+DR+               NQNQ     
Sbjct: 204 E-RRPSRGNFRGRGRTRGTGRGGHVRGNRREYNDREYNNREYNNREYNEGSNQNQVPKVV 262

Query: 254 XXXXXXXXYEPTYKNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPV 313
                   YEPT + N  APQ+QN+QS K   K S   S R   P SN+ESDPVPAKK  
Sbjct: 263 VKGRGPRRYEPTNRRNGPAPQVQNKQSRKSQDKTSLAISERNSMPSSNAESDPVPAKKTS 322

Query: 314 -LASNLNYASPPFYPSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRG 372
            +ASNLNYASPPFYPSGS+NKD +L  KRDVQ GSTSRN+H  VM EGF  Q NN +HRG
Sbjct: 323 HVASNLNYASPPFYPSGSSNKDINLPQKRDVQIGSTSRNIHP-VMDEGFPVQ-NNTIHRG 380

Query: 373 KNIVDSISMDKLHIDGSFRPSVGKPLNNLHMHPPGSSEVRASQSTHPRAS--GRGGPIPV 430
           KN+VDSISMDKL+ID S  PSVGKPLNN+H+ PPGSS V  SQS  PR +  GRG PIP+
Sbjct: 381 KNVVDSISMDKLYIDQSVGPSVGKPLNNVHLAPPGSSGVHVSQSPFPRPAGPGRGAPIPL 440

Query: 431 QMNYHPAASHNQVNKITPSPTQYHAIQKTSAPGR--TSMQAPAPQLGHR-----PGSSSP 483
           QMNY P  SH QVNK+  SPTQ  AIQ++SAPGR  TS+QA A Q+GHR       SS P
Sbjct: 441 QMNYQPVPSHTQVNKV--SPTQLQAIQRSSAPGRTLTSVQATAAQMGHRPGSGSQSSSPP 498

Query: 484 PKASVANGSDAGEIDVASESGKSMGTLVGNERAVSQGNGRGSFIY--XXXXXXXXXXXXX 541
            +++  N  D+GE D ASESGK+ G LVG  +   QG GRG F+Y               
Sbjct: 499 KRSASINSLDSGETDAASESGKAKGALVGKGKGAPQGPGRGPFVYGGAQVMGAAGNMGIS 558

Query: 542 XXDQNFPTFLPGW 554
             D NFPTFLPG 
Sbjct: 559 QGDPNFPTFLPGL 571


>Medtr4g011920.1 | CASC3/barentsz eIF4AIII-binding protein | HC |
           chr4:3118579-3114309 | 20130731
          Length = 748

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/431 (57%), Positives = 285/431 (66%), Gaps = 33/431 (7%)

Query: 149 PFSVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEITFQDRPYK 208
           PF+VPTAGAFYMHDDRFRDN+             LWESKD++KWGHDKFEEI+ QDR Y 
Sbjct: 145 PFAVPTAGAFYMHDDRFRDNSNARQRRMHGGRR-LWESKDDKKWGHDKFEEISVQDRRYD 203

Query: 209 EGRRPSRGNFRGRGKTRGVARGGYVRGDRKSYDDRD---------------NQNQXXXXX 253
           E RRPSRGNFRGRG+TRG  RGG+VRG+R+ Y+DR+               NQNQ     
Sbjct: 204 E-RRPSRGNFRGRGRTRGTGRGGHVRGNRREYNDREYNNREYNNREYNEGSNQNQVPKVV 262

Query: 254 XXXXXXXXYEPTYKNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPV 313
                   YEPT + N  APQ+QN+QS K   K S   S R   P SN+ESDPVPAKK  
Sbjct: 263 VKGRGPRRYEPTNRRNGPAPQVQNKQSRKSQDKTSLAISERNSMPSSNAESDPVPAKKTS 322

Query: 314 -LASNLNYASPPFYPSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRG 372
            +ASNLNYASPPFYPSGS+NKD +L  KRDVQ GSTSRN+H  VM EGF  Q NN +HRG
Sbjct: 323 HVASNLNYASPPFYPSGSSNKDINLPQKRDVQIGSTSRNIHP-VMDEGFPVQ-NNTIHRG 380

Query: 373 KNIVDSISMDKLHIDGSFRPSVGKPLNNLHMHPPGSSEVRASQSTHPRAS--GRGGPIPV 430
           KN+VDSISMDKL+ID S  PSVGKPLNN+H+ PPGSS V  SQS  PR +  GRG PIP+
Sbjct: 381 KNVVDSISMDKLYIDQSVGPSVGKPLNNVHLAPPGSSGVHVSQSPFPRPAGPGRGAPIPL 440

Query: 431 QMNYHPAASHNQVNKITPSPTQYHAIQKTSAPGR--TSMQAPAPQLGHR-----PGSSSP 483
           QMNY P  SH QVNK+  SPTQ  AIQ++SAPGR  TS+QA A Q+GHR       SS P
Sbjct: 441 QMNYQPVPSHTQVNKV--SPTQLQAIQRSSAPGRTLTSVQATAAQMGHRPGSGSQSSSPP 498

Query: 484 PKASVANGSDAGEIDVASESGKSMGTLVGNERAVSQGNGRGSFIY--XXXXXXXXXXXXX 541
            +++  N  D+GE D ASESGK+ G LVG  +   QG GRG F+Y               
Sbjct: 499 KRSASINSLDSGETDAASESGKAKGALVGKGKGAPQGPGRGPFVYGGAQVMGAAGNMGIS 558

Query: 542 XXDQNFPTFLP 552
             D NFPTFLP
Sbjct: 559 QGDPNFPTFLP 569


>Medtr1g051515.1 | hypothetical protein | LC |
           chr1:20426504-20427311 | 20130731
          Length = 96

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 324 PFYPS-GSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRGKNIVDSISMD 382
           PF  S  S +K     P +DVQ GSTSRN+H  +M EGF  QQNN +H GKN+VDSISMD
Sbjct: 32  PFVESLSSCHKHGLHNPFKDVQNGSTSRNIHP-LMDEGFPIQQNNMIHWGKNVVDSISMD 90

Query: 383 KLH 385
           KL+
Sbjct: 91  KLY 93