Miyakogusa Predicted Gene

Lj3g3v0139480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139480.1 tr|A9TSB0|A9TSB0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_96490
,38.96,4e-18,seg,NULL; OS01G0617700 PROTEIN,NULL; CENTROMERE PROTEIN
C,NULL,CUFF.40318.1
         (699 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g467560.1 | centromere C-like protein | HC | chr8:24304823...   703   0.0  
Medtr6g068960.1 | centromere C-like protein | HC | chr6:24784621...   633   0.0  
Medtr3g434860.1 | centromere C-like protein, putative | LC | chr...    55   3e-07

>Medtr8g467560.1 | centromere C-like protein | HC |
           chr8:24304823-24299732 | 20130731
          Length = 697

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/699 (56%), Positives = 487/699 (69%), Gaps = 28/699 (4%)

Query: 18  DPLSNYRGLSLFPSTSSALPLS-VADDLDAIHNHLRSMALRSPAKLVEQTKAILEENPGL 76
           DP++NY GLSLF ST S  P S    DLDAI+N+LRSM L SP +L EQ ++ILE N G 
Sbjct: 10  DPIANYSGLSLFRSTFSLQPSSNPFHDLDAINNNLRSMDLGSPTRLAEQGQSILENNLG- 68

Query: 77  FNSQDDERNXXXXXXXXXAEDGQDFPRKRRPGLGLKRAR--FSLKPSTSVSLESLLPNLD 134
           FN+++  ++          E+G++FPRKRRPGLGL RAR  FSLKP+   S+E LLP+LD
Sbjct: 69  FNTENLTQDVENDDVFA-VEEGEEFPRKRRPGLGLNRARPRFSLKPTKKPSVEDLLPSLD 127

Query: 135 IENLKDPVEFFKAHERMENARREIQKQMG-VSVEQNQDDVSTRPRQRRPGLRGNDQRSIK 193
           I++ KDP EFF AHER ENARRE+QKQ+G VS E NQD  ST+PR RRPGL G ++  +K
Sbjct: 128 IKDHKDPEEFFLAHERRENARRELQKQLGIVSSEPNQD--STKPRDRRPGLPGFNRGPVK 185

Query: 194 YRHRYSTEISDKNDHAMASQEAFGSDSLDPDTEKIENGEACLTSLENEVTDSSATEGNKI 253
           YRHR+S E  D N   ++SQE F SD+LD   +  + G+A  TSL+NEV  S A E NK 
Sbjct: 186 YRHRFSQETLDNNVDVLSSQEVFESDNLDLVGDNTDTGDASPTSLDNEVAGSPAVEENKG 245

Query: 254 CEILDGLLRCNSEDLEGDGAMDLLQERLQIKPVVLEKVSVPDFPDNQPIDLKSLRGSLSK 313
            +IL GLL CNSE+LEGDGAM+LLQERL IKP+V EK+SVPDFPD QPIDLK LR + SK
Sbjct: 246 NDILQGLLTCNSEELEGDGAMNLLQERLNIKPIVFEKLSVPDFPDIQPIDLKFLRENSSK 305

Query: 314 PRKALSNIDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPFAPLSSLLNHISRLKPSVD 373
           PRKALSNIDNLLNR   KTPLR+D G   +QL SPTPPRSPFA LS L   I R KPSVD
Sbjct: 306 PRKALSNIDNLLNRIDIKTPLRRDVGYTEKQLGSPTPPRSPFASLSKLQKQILRSKPSVD 365

Query: 374 PFSAHDIDHLSTTKYSPVHKMNQELNVVGSAKPSNELNDHITKDAVAIGETNAVPDTLRN 433
           PFSAH+IDH+S    SP   +NQE+N+VGS+KP++EL+  + +D +A GETN + DT   
Sbjct: 366 PFSAHEIDHISKRNSSPTDTINQEVNIVGSSKPADELSAPVIEDVIAAGETNTILDT--- 422

Query: 434 CASASENSKEDNSGKSSNKLDAPLIEDILAVSESCLIEDAVMNSTSTSQMPMEDNSMEPE 493
               SE SKE+ S KSS +++APLIED + VSE+  +++ V+N TST    M DNS EPE
Sbjct: 423 ----SEKSKEEVSRKSSEQVNAPLIEDKVGVSETSSVDNPVINCTSTPLKSMVDNSREPE 478

Query: 494 FDANVDRNEPHADMDVDNGGSGMGETVMDDTVAKPNIEI--------LTENTDAFTASMP 545
           F+ANVD NEP  DMDVD G SGMG+  MDD V + N+E         L EN   FTAS+P
Sbjct: 479 FNANVDSNEPPVDMDVDIGSSGMGKRAMDDIVGRQNVEPQPYQSEDNLPENMHEFTASLP 538

Query: 546 TDDTDIDVVNPLADQSSPG---VIQANSIDKRTTCTNEGSEQCLQEERDGSRAPVE-QKR 601
           TDD ++++V PLADQS+       QANS+DKR+  +N+G E  LQE   GS APV  QKR
Sbjct: 539 TDDANLNLVIPLADQSNASNQDEHQANSMDKRSGRSNDGPELSLQENTVGSVAPVNGQKR 598

Query: 602 VKSRSQKDTKS-KRLAKRQSLAAAXXXXXXXXXXXXXXXXXPLEYWKGERLVYGRIHQSL 660
           VK  +QK +K  KR   R SLA A                 PLEYWKGER+VYGR+H+SL
Sbjct: 599 VKVCAQKVSKGKKREQHRMSLADAGTSWESGVRRSKRFRTRPLEYWKGERMVYGRVHESL 658

Query: 661 VTVLGVKCMSPGSNGKPTMKVKSFVQDKHKELFDLASRY 699
            TV+GVK  SPG +GKP MKVKSFV DK+K+LF++AS Y
Sbjct: 659 STVIGVKRFSPGGDGKPNMKVKSFVSDKYKQLFEIASLY 697


>Medtr6g068960.1 | centromere C-like protein | HC |
           chr6:24784621-24789329 | 20130731
          Length = 628

 Score =  633 bits (1632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/619 (55%), Positives = 432/619 (69%), Gaps = 33/619 (5%)

Query: 96  EDGQDFPRKRRPGLGLKRAR--FSLKPSTSVSLESLLPNLDIENLKDPVEFFKAHERMEN 153
           EDG+  PRKRRPGLGL RAR  FSLKP+   S+E LLP LD++ L DP EFF AHER+EN
Sbjct: 28  EDGE-LPRKRRPGLGLNRARPRFSLKPTKKPSVEDLLPILDLKKLTDPEEFFMAHERLEN 86

Query: 154 ARREIQKQMGVSVEQNQDDVSTRPRQRRPGLRGNDQRSIKYRHRYSTEISDKNDHAMASQ 213
           A+REI+KQ+G+   Q   D ST+PR+RRPGL G ++R ++YRHR STE    ND  ++SQ
Sbjct: 87  AKREIEKQLGIVSSQPSQD-STKPRERRPGLPGFNRRPVRYRHRVSTEALVNNDDVLSSQ 145

Query: 214 EAFGSDSLDPDTEKIENGEACLTSLENEVTDSSATEGNKICEILDGLLRCNSEDLEGDGA 273
           EAF SD LDP  +  + G+  L SL+NEVTDS A E NK+ +IL GLL C+SE+LEG+GA
Sbjct: 146 EAFESDGLDPVGDNTDKGKFSLASLDNEVTDSPAIEENKMNDILKGLLDCDSEELEGEGA 205

Query: 274 MDLLQERLQIKPVVLEKVSVPDFPDNQPIDLKSLRGSLSKPR--KALSNIDNLLNRRKNK 331
           M+LLQERLQ+K +V EK+SVPDF D QPIDLKSL+G+LSKP   KA S++DN L     +
Sbjct: 206 MNLLQERLQVKSIVFEKLSVPDFLDIQPIDLKSLQGTLSKPSKGKAFSDVDNWLKGMNIQ 265

Query: 332 TPLRQDAGSPAEQLASPTPPRSPFAPLSSLLNHISRLKPSVDPFSAHDIDHLSTTKYSPV 391
           TPLR+  G   +QLASPTPP+SPFA LSSL  HISR K S DPFS H+ID + T  YSP+
Sbjct: 266 TPLRRSVGYAEKQLASPTPPKSPFASLSSLQKHISRSKLSTDPFSTHEIDLVPTRSYSPI 325

Query: 392 HKMNQELNVVGSAKPSNELNDHITKDAVAIGETNAVPDTLRNCASASENSKEDNSGKSSN 451
           H  +QE+++VGS+K S+EL    T+D +A GE N +P+T       SENSKE NS   S+
Sbjct: 326 HMADQEVDIVGSSKLSDELTAPTTEDVIAAGEKNTIPET-------SENSKEHNSRNPSD 378

Query: 452 KLDAPLIEDILAVSESCLIEDAVMNSTSTSQMPMEDNSMEPEFDANVDRNEPHADMDVDN 511
           +++AP+IEDI        +++   N T T Q  M DNS EP F+ANVD NEP  DMDVD 
Sbjct: 379 EVNAPIIEDI--------VDNPDRNCTITPQKSMVDNSTEPGFNANVDSNEPAVDMDVDI 430

Query: 512 GGSGMGETVMDDTVAKPNIE----------ILTENTDAFTASMPTDDTDIDVVNPLADQS 561
           G SGMG+ VMDDT  + N+E           L EN   FT+S+PTDD +++   PLADQS
Sbjct: 431 GRSGMGKRVMDDTEGRQNVEPNEPFHFDDNTLEENMQGFTSSIPTDDANLNTELPLADQS 490

Query: 562 SPGVIQANSIDKRTTCTNEGSEQCLQEERDGSRAPVE-QKRVKSRSQKDTKSKRLAKRQS 620
           +P   QANS+DK +  +++G EQCLQE+  GS APV  Q  VKS  +K +K KRL  R+S
Sbjct: 491 NPVTYQANSMDKGSRRSDDGPEQCLQEKTIGSAAPVNGQTIVKSCMRKGSKGKRLL-RKS 549

Query: 621 LAAAXXXXXXXXXXXXXXXXXPLEYWKGERLVYGRIHQSLVTVLGVKCMSPGSNGKPTMK 680
           LA A                 PLEYWKGER+VYGR+H+SL TV+GVKCMSPGS+GKPTMK
Sbjct: 550 LADAGTSWESGVRRSTRFRTKPLEYWKGERMVYGRVHESLSTVIGVKCMSPGSDGKPTMK 609

Query: 681 VKSFVQDKHKELFDLASRY 699
           VKSFV DK+KELF++AS Y
Sbjct: 610 VKSFVSDKYKELFEIASEY 628


>Medtr3g434860.1 | centromere C-like protein, putative | LC |
           chr3:11360723-11358288 | 20130731
          Length = 193

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 245 SSATEGNKICEILDGLLRCNSEDLEGDGAMDLLQERLQIKPVVLEKVSV--PDFPDNQPI 302
           SSA E NK+ E       C+S +L+ D AM LL+  L +KP+VLE++S+   DFP    I
Sbjct: 67  SSAIEENKLNETPS----CDSAELKRDEAMKLLKGVLHLKPIVLEELSLSSSDFPGYHVI 122

Query: 303 DLKSLRGSLSKPRKALSNIDNLLNRRKN 330
           DLK LRG   K R+    I+  L    N
Sbjct: 123 DLKPLRGGSLKQREEFFEIEKWLENGTN 150