Miyakogusa Predicted Gene

Lj3g3v0139460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139460.1 Non Characterized Hit- tr|G1P852|G1P852_MYOLU
Uncharacterized protein (Fragment) OS=Myotis
lucifugus,45.26,1e-18,breast cancer carboxy-terminal domain,BRCT
domain; SUBFAMILY NOT NAMED,NULL; DNA-REPAIR PROTEIN XRCC,CUFF.40314.1
         (389 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g102430.1 | BRCT domain DNA repair protein | HC | chr2:441...   528   e-150

>Medtr2g102430.1 | BRCT domain DNA repair protein | HC |
           chr2:44111723-44118272 | 20130731
          Length = 553

 Score =  528 bits (1359), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/374 (71%), Positives = 298/374 (79%), Gaps = 17/374 (4%)

Query: 12  SKRNLPSWLGTSGGNEDESSANKPTLDDDGEKSSGTGSVTHKKSKVQTEXXXXXXXXXXX 71
           SKRNLPSW+ ++  +   +   +PTLD+ GEKSS  G+ ++KK+KV+ E           
Sbjct: 3   SKRNLPSWMTSNDDDGHGNFGKRPTLDEGGEKSSEIGT-SNKKTKVENENA--------- 52

Query: 72  XXXXXFNNLMEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSECTLLICAFPNTPKF 131
                FN LMEGVVFVLSGFVNPERG+LRSRAMEMGAE+K DWNS CTLL+CAFPNTPKF
Sbjct: 53  -----FNKLMEGVVFVLSGFVNPERGILRSRAMEMGAEFKQDWNSNCTLLVCAFPNTPKF 107

Query: 132 RQVEADCGTIVSKDWILECYTQKKLVEIESYLMHAGKPWRKGGRSQXXXXXXXXXXXXXX 191
           RQVEADCGTIVS+DWI ECY Q+KLVEI+SYLMHAGKPWR GGRS               
Sbjct: 108 RQVEADCGTIVSEDWIQECYRQRKLVEIDSYLMHAGKPWRNGGRSHEVDEEQKPSVPHKP 167

Query: 192 AKHVERELPSKETASIKSKGKGTNQARKCFEPSEVKKWAVDDLNKTIQWLESQEDKPDPS 251
            K VERE  S+ T SIKSKGK T+ ARKCFEPSEVKKWA+DDLNKTIQWLESQE+KPDP+
Sbjct: 168 QKRVERE-TSEATTSIKSKGKDTDDARKCFEPSEVKKWALDDLNKTIQWLESQEEKPDPN 226

Query: 252 ETTKIAAEGILTCLQDVICSLEEKKDIRKGTEDWKFLPRVVEELAKLDVVGNNSASMSKE 311
           E TKIAAEGILTCLQD ICS+EEK+DI +GTEDWKFLPRVVEELA+L VVGNN ASMSKE
Sbjct: 227 EITKIAAEGILTCLQDAICSIEEKQDIGRGTEDWKFLPRVVEELARLYVVGNNKASMSKE 286

Query: 312 DLHRQALDCKRIYEVELNRSDHEWTKNSKKTEEQTSKTGRTN-AMSSGGMEYDSDETIEM 370
           D+H+QALDCKRIYE ELNR DHE TK SK  EE  SK GRTN A SSG +EYDSD+TIEM
Sbjct: 287 DIHKQALDCKRIYEEELNRLDHELTKKSKINEEHRSKRGRTNDASSSGAVEYDSDDTIEM 346

Query: 371 TEQEIDLAYKTLSS 384
           TEQEIDLAYKTLSS
Sbjct: 347 TEQEIDLAYKTLSS 360