Miyakogusa Predicted Gene

Lj3g3v0116130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0116130.1 tr|A9RES0|A9RES0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65167
,34.12,2e-18,BAH,Bromo adjacent homology (BAH) domain;
seg,NULL,CUFF.40296.1
         (270 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g062470.1 | BAH domain protein | HC | chr2:26371807-263789...   247   7e-66
Medtr3g109470.2 | bromo-adjacent-like (BAH) domain protein | HC ...   165   3e-41
Medtr3g109470.1 | bromo-adjacent-like (BAH) domain protein | HC ...   165   3e-41
Medtr1445s0010.1 | bromo-adjacent-like (BAH) domain protein | HC...   130   2e-30
Medtr1g008670.2 | bromo-adjacent-like (BAH) domain protein | HC ...   124   1e-28
Medtr1g008670.1 | bromo-adjacent-like (BAH) domain protein | HC ...   120   9e-28
Medtr1g008610.1 | bromo-adjacent-like (BAH) domain protein | LC ...   119   3e-27
Medtr1g008670.3 | bromo-adjacent-like (BAH) domain protein | HC ...   118   6e-27
Medtr3g109470.3 | bromo-adjacent-like (BAH) domain protein | HC ...    77   3e-14

>Medtr2g062470.1 | BAH domain protein | HC | chr2:26371807-26378909
           | 20130731
          Length = 556

 Score =  247 bits (631), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 164/241 (68%), Gaps = 26/241 (10%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSH 73
           DFKWG KRG+GVKNK  QFY+SFVY+GV+Y LYD  YFY   HVETSIGKLV+MYE  S 
Sbjct: 20  DFKWGNKRGIGVKNKHTQFYDSFVYDGVEYFLYDSVYFYHTDHVETSIGKLVKMYE-TSR 78

Query: 74  NKMVKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAIIGKCNVVCTSKD 126
            KM++VVWF RP EIRNF   Y+P W+E       GKG+ N+N L +I+GKCNVVCTS+D
Sbjct: 79  AKMIRVVWFFRPSEIRNFHRGYKPCWNELFLASGKGKGLFNINLLESILGKCNVVCTSED 138

Query: 127 RRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNRKGDNEIRNDLHV 186
           RRNP+PS+T+LK+AD+ F  TFDV +  + DKF DKIDG EVE FFN+KG  +  N+LH+
Sbjct: 139 RRNPKPSETELKRADFLFKCTFDVDRCVIDDKFPDKIDGAEVELFFNKKGAKKTGNNLHL 198

Query: 187 GTN--PRKIV---------------TKTRTDPSDILPYRVKDKAEA-MPPNIVLPEKSSN 228
            TN  P++I                 KT+T PSDIL  +V+DK E     N+ L  K + 
Sbjct: 199 ETNKMPQQIKKTKIKMKTYENIKDEVKTKTAPSDILRCKVEDKDELRTSENVSLKIKMTT 258

Query: 229 S 229
           S
Sbjct: 259 S 259


>Medtr3g109470.2 | bromo-adjacent-like (BAH) domain protein | HC |
           chr3:50637118-50623280 | 20130731
          Length = 658

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 109/167 (65%), Gaps = 7/167 (4%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSH 73
           +FKWG+ +  G K + + FYESF Y+GV Y+LYD  Y Y     E  IGK+++++E  + 
Sbjct: 11  EFKWGKHKCFGGKKREVNFYESFTYDGVHYTLYDSVYLYKEGEREPFIGKVIKIWENANK 70

Query: 74  NKMVKVVWFLRPGEIRNFMGHYRP-------SWDEGKGVSNLNYLGAIIGKCNVVCTSKD 126
           +K VK++WF RP EI NF+  Y P       +  EG G++N+N L AI GKCNVVC SKD
Sbjct: 71  SKKVKILWFFRPCEIFNFLQGYEPVENELFLASGEGLGLTNINPLEAIAGKCNVVCISKD 130

Query: 127 RRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFN 173
            RNP P D DL+ AD+     FDVG+ +++DK  DKI GIEV++ FN
Sbjct: 131 NRNPPPPDKDLQNADFVCYRFFDVGQHKILDKVDDKIAGIEVKNIFN 177


>Medtr3g109470.1 | bromo-adjacent-like (BAH) domain protein | HC |
           chr3:50637117-50623248 | 20130731
          Length = 672

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 109/167 (65%), Gaps = 7/167 (4%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSH 73
           +FKWG+ +  G K + + FYESF Y+GV Y+LYD  Y Y     E  IGK+++++E  + 
Sbjct: 11  EFKWGKHKCFGGKKREVNFYESFTYDGVHYTLYDSVYLYKEGEREPFIGKVIKIWENANK 70

Query: 74  NKMVKVVWFLRPGEIRNFMGHYRP-------SWDEGKGVSNLNYLGAIIGKCNVVCTSKD 126
           +K VK++WF RP EI NF+  Y P       +  EG G++N+N L AI GKCNVVC SKD
Sbjct: 71  SKKVKILWFFRPCEIFNFLQGYEPVENELFLASGEGLGLTNINPLEAIAGKCNVVCISKD 130

Query: 127 RRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFN 173
            RNP P D DL+ AD+     FDVG+ +++DK  DKI GIEV++ FN
Sbjct: 131 NRNPPPPDKDLQNADFVCYRFFDVGQHKILDKVDDKIAGIEVKNIFN 177


>Medtr1445s0010.1 | bromo-adjacent-like (BAH) domain protein | HC |
           scaffold1445:984-1349 | 20130731
          Length = 122

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 8/103 (7%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSH 73
           DFKWG KRG+GVKNK  QFY+SFVYEGV+Y L+DC YFY   HVETSIG LV+M+E    
Sbjct: 17  DFKWGNKRGIGVKNKDTQFYDSFVYEGVEYFLHDCVYFYHTDHVETSIGMLVKMFEN-GR 75

Query: 74  NKMVKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLN 109
            KM++VVWF RP EI++F   Y+PSW+E       GKG++N+N
Sbjct: 76  RKMIRVVWFFRPSEIQSFHRSYQPSWNELFLASGKGKGLTNVN 118


>Medtr1g008670.2 | bromo-adjacent-like (BAH) domain protein | HC |
           chr1:1017899-1020042 | 20130731
          Length = 195

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 109/174 (62%), Gaps = 13/174 (7%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDAR--HVETSIGKLVRMYEGP 71
           +FKWG+KRG G K +  QFYESF ++G  YSL+D  Y  +      E  IGK+++++E P
Sbjct: 20  EFKWGKKRGKGGKKRDTQFYESFTFDGEDYSLFDTVYLQNGNEPQSEPHIGKIIKIWEVP 79

Query: 72  SHNKM--VKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAIIGKCNVVC 122
           +  K   VK+ WF RP E+  F+   +  ++E       G G++N+N + +I GKCNVVC
Sbjct: 80  NREKAKKVKIQWFFRPREVSKFLKRIQIYYNELFFATGVGNGLTNINPVESIAGKCNVVC 139

Query: 123 TSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELV--DKFADKIDGIEVEHFFNR 174
            SKD RNP+PSD  ++ AD+ F   FDVG+ ++V  ++  +K  GI+V+  FN+
Sbjct: 140 ISKDARNPQPSDEAVQNADFVFYRYFDVGQRKIVEEEEVDEKSVGIDVKKLFNK 193


>Medtr1g008670.1 | bromo-adjacent-like (BAH) domain protein | HC |
           chr1:1017899-1021635 | 20130731
          Length = 225

 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 13/190 (6%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDAR--HVETSIGKLVRMYEGP 71
           +FKWG+KRG G K +  QFYESF ++G  YSL+D  Y  +      E  IGK+++++E P
Sbjct: 20  EFKWGKKRGKGGKKRDTQFYESFTFDGEDYSLFDTVYLQNGNEPQSEPHIGKIIKIWEVP 79

Query: 72  SHNKM--VKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAIIGKCNVVC 122
           +  K   VK+ WF RP E+  F+   +  ++E       G G++N+N + +I GKCNVVC
Sbjct: 80  NREKAKKVKIQWFFRPREVSKFLKRIQIYYNELFFATGVGNGLTNINPVESIAGKCNVVC 139

Query: 123 TSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELV--DKFADKIDGIEVEHFFNRKGDNEI 180
            SKD RNP+PSD  ++ AD+ F   FDVG+ ++V  ++  +K  GI+  H  N       
Sbjct: 140 ISKDARNPQPSDEAVQNADFVFYRYFDVGQRKIVEEEEVDEKSVGIDGFHLLNYGCVGLN 199

Query: 181 RNDLHVGTNP 190
            N LH    P
Sbjct: 200 PNSLHFCNQP 209


>Medtr1g008610.1 | bromo-adjacent-like (BAH) domain protein | LC |
           chr1:993930-996385 | 20130731
          Length = 192

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 8/170 (4%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSH 73
           +FKWG+KRG G K + IQFY+SF   GV YSL+D  Y  +    E  IGK+++++E P+ 
Sbjct: 24  EFKWGQKRGKGGKKRDIQFYQSFTLRGVDYSLFDNVYVKN-DFAEPRIGKIIKIWETPTL 82

Query: 74  NKMVKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAIIGKCNVVCTSKD 126
            + +KV WF RP E+   +   +  ++E       G G++ ++ L +I GKCN+VC SKD
Sbjct: 83  ERKIKVQWFFRPIEVSKCLTWIKIYFNELFFACGDGDGLATIHPLESIAGKCNIVCISKD 142

Query: 127 RRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNRKG 176
            RNP+ SD     A + F   FDVG+ ++V++  DK  GIEV++ FN+ G
Sbjct: 143 SRNPQLSDKVTWSAAFVFYRYFDVGQRKIVEEVDDKSIGIEVKNIFNKLG 192


>Medtr1g008670.3 | bromo-adjacent-like (BAH) domain protein | HC |
           chr1:1017438-1021635 | 20130731
          Length = 238

 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 11/156 (7%)

Query: 14  DFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDAR--HVETSIGKLVRMYEGP 71
           +FKWG+KRG G K +  QFYESF ++G  YSL+D  Y  +      E  IGK+++++E P
Sbjct: 68  EFKWGKKRGKGGKKRDTQFYESFTFDGEDYSLFDTVYLQNGNEPQSEPHIGKIIKIWEVP 127

Query: 72  SHNKM--VKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAIIGKCNVVC 122
           +  K   VK+ WF RP E+  F+   +  ++E       G G++N+N + +I GKCNVVC
Sbjct: 128 NREKAKKVKIQWFFRPREVSKFLKRIQIYYNELFFATGVGNGLTNINPVESIAGKCNVVC 187

Query: 123 TSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDK 158
            SKD RNP+PSD  ++ AD+ F   FDVG+ ++V++
Sbjct: 188 ISKDARNPQPSDEAVQNADFVFYRYFDVGQRKIVEE 223


>Medtr3g109470.3 | bromo-adjacent-like (BAH) domain protein | HC |
           chr3:50637107-50623248 | 20130731
          Length = 575

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%)

Query: 113 AIIGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFF 172
           AI GKCNVVC SKD RNP P D DL+ AD+     FDVG+ +++DK  DKI GIEV++ F
Sbjct: 20  AIAGKCNVVCISKDNRNPPPPDKDLQNADFVCYRFFDVGQHKILDKVDDKIAGIEVKNIF 79

Query: 173 N 173
           N
Sbjct: 80  N 80