Miyakogusa Predicted Gene

Lj3g3v0115940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0115940.1 Non Characterized Hit- tr|D8S5W6|D8S5W6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.74,2e-18,Q8LBW7_ARATH_Q8LBW7;,Cytochrome c oxidase, subunit
Vb; no description,Cytochrome c oxidase, subunit ,CUFF.40310.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103150.1 | cytochrome C oxidase subunit 5b | HC | chr2:44...   236   9e-63
Medtr4g011340.1 | cytochrome C oxidase subunit 5b | HC | chr4:27...   204   2e-53

>Medtr2g103150.1 | cytochrome C oxidase subunit 5b | HC |
           chr2:44414137-44418994 | 20130731
          Length = 150

 Score =  236 bits (601), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 132/142 (92%), Gaps = 5/142 (3%)

Query: 1   MWRRLFTSPHLKSLSATLSHSPHPGSA---LRFAVAARYVATQSAGSIKKTVEDVVPIAT 57
           MWRR+ +SPHLK+L+++ SHS HP SA   LRFA  +R+VATQSAGS+KKTVEDVVPIAT
Sbjct: 1   MWRRIVSSPHLKTLASS-SHS-HPRSAVAGLRFAGLSRHVATQSAGSVKKTVEDVVPIAT 58

Query: 58  GHEREEIQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRIVGCPGGEGEDEHDVVWF 117
           GHEREEIQADLEGR+ILEI+HPEGPFGTKEAPAVV+SY++RRIVGCPGGEGEDEHDVVWF
Sbjct: 59  GHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGEGEDEHDVVWF 118

Query: 118 WLEKGKPHECPVCAQYFVLEVV 139
           WLE+GKPHECPVCAQYF LEVV
Sbjct: 119 WLEEGKPHECPVCAQYFQLEVV 140


>Medtr4g011340.1 | cytochrome C oxidase subunit 5b | HC |
           chr4:2734111-2728956 | 20130731
          Length = 156

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 118/144 (81%), Gaps = 9/144 (6%)

Query: 1   MWRRLFTSPHLKSLSATLSHSPHPGSALRFAVAARY-VATQSAGS----IKKTVEDVVPI 55
           M RRL  S  LK+L++  S    P SA+  ++ +R+  +TQS+      IKK VEDVVPI
Sbjct: 1   MLRRLLISSQLKTLTSRRS----PSSAVAVSLLSRHHFSTQSSDDSTTGIKKKVEDVVPI 56

Query: 56  ATGHEREEIQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRIVGCPGGEGEDEHDVV 115
           ATGHEREEIQA LEGRDILEI+HPEGPFGTKEAPAVV+SY+D+RIVGCPGGEGEDEHDVV
Sbjct: 57  ATGHEREEIQAQLEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVV 116

Query: 116 WFWLEKGKPHECPVCAQYFVLEVV 139
           WFWLEK KPHECPVCAQYFVLEVV
Sbjct: 117 WFWLEKDKPHECPVCAQYFVLEVV 140