Miyakogusa Predicted Gene

Lj3g3v0095850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0095850.1 tr|E6NU95|E6NU95_9ROSI JHL06B08.6 protein
OS=Jatropha curcas GN=JHL06B08.6 PE=4 SV=1,93.91,0,domain present in
cyclins, TFIIB and Retinob,Cyclin-like; TFIIB,Transcription factor
TFIIB, conserve,CUFF.40277.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g091230.1 | transcription initiation factor IIB | HC | chr...   590   e-169
Medtr3g037190.1 | transcription initiation factor IIB | HC | chr...   554   e-158
Medtr1g053065.1 | transcription initiation factor IIB | HC | chr...   513   e-146
Medtr3g040150.1 | transcription initiation factor IIB | HC | chr...   483   e-136
Medtr3g040300.1 | transcription initiation factor IIB | HC | chr...   413   e-115
Medtr1g023620.1 | hypothetical protein | LC | chr1:7591057-75918...    99   4e-21
Medtr5g019910.1 | transcription factor IIB | HC | chr5:7553976-7...    94   2e-19

>Medtr7g091230.1 | transcription initiation factor IIB | HC |
           chr7:36014917-36009852 | 20130731
          Length = 313

 Score =  590 bits (1521), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/313 (90%), Positives = 293/313 (93%), Gaps = 1/313 (0%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D FCSDCKR TEVVFDHSAGD VCSECGLVLESHSIDETSEWRTFANE+GDNDPVRVG
Sbjct: 1   MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
           GPSNPLLTDGGLSTVIAK NG+SG+FLS+SLGRWQNRGSNPDRGLI+AFKTI TM++RLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LV TIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGATK
Sbjct: 121 LVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLEN-GQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEE 239
           KEIGRAKEYIVKQLGLEN GQSVEMGTIHAGDFMRRFCSNLGMN+            SEE
Sbjct: 181 KEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEE 240

Query: 240 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW 299
           FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW
Sbjct: 241 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW 300

Query: 300 YAKEEDLKNLCSP 312
           YAKEEDLKNLCSP
Sbjct: 301 YAKEEDLKNLCSP 313


>Medtr3g037190.1 | transcription initiation factor IIB | HC |
           chr3:13609403-13610344 | 20130731
          Length = 313

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/313 (84%), Positives = 283/313 (90%), Gaps = 1/313 (0%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D FCSDCKR TEVVFD SAGD +CSECGLVLESHSIDETSEWRTFANE+G+ND VRVG
Sbjct: 1   MSDAFCSDCKRATEVVFDRSAGDAICSECGLVLESHSIDETSEWRTFANESGNNDAVRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
           GP+NPLL DGGLSTVIAK NG S +FLS+++ RWQ  GSNPDRGLI+AFKTI TM++RLG
Sbjct: 61  GPNNPLLNDGGLSTVIAKPNGESVDFLSSAVNRWQKHGSNPDRGLILAFKTIDTMAERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LV  IKDRANEIYKRV+DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVPIIKDRANEIYKRVQDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLEN-GQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEE 239
           KEIGRAKEYIVKQLGLEN GQSVEMGTIHAGDFMRRFCSNLGMN+            SEE
Sbjct: 181 KEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVKKSEE 240

Query: 240 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW 299
           FDIRRSPI+IAAAVIYIITQLSDDKKPLKDISVATGVAEGTI+NSYKDLYPHVSKIIP W
Sbjct: 241 FDIRRSPITIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIKNSYKDLYPHVSKIIPTW 300

Query: 300 YAKEEDLKNLCSP 312
           YA+EEDLKNLC+P
Sbjct: 301 YAEEEDLKNLCNP 313


>Medtr1g053065.1 | transcription initiation factor IIB | HC |
           chr1:22093097-22088892 | 20130731
          Length = 312

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/312 (78%), Positives = 269/312 (86%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M + FCSDCKR+TEVVF+HSAGDTVCSECGLVLESHSIDET EWRTFANE+ DNDP RVG
Sbjct: 1   MSEYFCSDCKRETEVVFNHSAGDTVCSECGLVLESHSIDETFEWRTFANESNDNDPNRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
             SNPLL DGGLST IAK NGSS EFLS +L R QNR SN DR L++AFK I TM++RL 
Sbjct: 61  SASNPLLKDGGLSTYIAKPNGSSSEFLSPTLNRLQNRASNHDRTLLLAFKNITTMAERLD 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           L   IKDRANEIYKRVEDQKSSRGRNQDALLAAC+YIACRQE+KPRTVKEICSVANGATK
Sbjct: 121 LATFIKDRANEIYKRVEDQKSSRGRNQDALLAACIYIACRQEEKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF 240
           KEIGRAKEYIVKQLGL+NGQS+EMGTI+AGDFMRRFCS + +NN            SEEF
Sbjct: 181 KEIGRAKEYIVKQLGLDNGQSMEMGTINAGDFMRRFCSTIDLNNQARKAAMEAVKKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWY 300
           DIRRSPI+IAAAVIYII+QLS DKKPLK IS+ TGVAEGTI+ SYKDLYP+++KIIPNWY
Sbjct: 241 DIRRSPITIAAAVIYIISQLSGDKKPLKTISIVTGVAEGTIKGSYKDLYPYITKIIPNWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLK+L  P
Sbjct: 301 AKEEDLKSLSGP 312


>Medtr3g040150.1 | transcription initiation factor IIB | HC |
           chr3:14074475-14075956 | 20130731
          Length = 405

 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/310 (74%), Positives = 262/310 (84%), Gaps = 6/310 (1%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D FC DC + T+VVFDHSAG+ VCSECGLVL SHSIDETSEW+TF+N+ G+N     G
Sbjct: 1   MFDAFCRDCNQATDVVFDHSAGNAVCSECGLVLGSHSIDETSEWQTFSNDYGNN-----G 55

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
            PSNPL+ D GLS VIAK+NG+S +  S+SLGRWQN  SNPD GLI++F+TI  M+++LG
Sbjct: 56  SPSNPLIVDDGLSNVIAKSNGASSDVPSSSLGRWQNSSSNPDLGLIVSFQTIDIMAEKLG 115

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LV TIKDRANEIYKRVEDQKSS+GRNQ+ALLAAC+YIACRQEDKPRT+KEIC +ANGATK
Sbjct: 116 LVPTIKDRANEIYKRVEDQKSSKGRNQEALLAACVYIACRQEDKPRTIKEICLIANGATK 175

Query: 181 KEIGRAKEYIVKQLGLEN-GQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEE 239
           KEI RAKEYIVKQLGLEN GQS+EMG IH GDFM RFCSNLGMN+            SEE
Sbjct: 176 KEIVRAKEYIVKQLGLENGGQSIEMGIIHIGDFMGRFCSNLGMNHQAVKAATESVQNSEE 235

Query: 240 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW 299
           FDIRRSPISIAA VIYIIT LSDDKK L+DISVATGV+EGTIRN+YKD++PHVSKIIP W
Sbjct: 236 FDIRRSPISIAATVIYIITHLSDDKKSLRDISVATGVSEGTIRNTYKDIFPHVSKIIPTW 295

Query: 300 YAKEEDLKNL 309
           YAKEEDLKNL
Sbjct: 296 YAKEEDLKNL 305


>Medtr3g040300.1 | transcription initiation factor IIB | HC |
           chr3:14150000-14150812 | 20130731
          Length = 270

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/313 (68%), Positives = 227/313 (72%), Gaps = 44/313 (14%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D FCSDCKR T+VVFDHSAG+ VCSECGLVL SHSIDETSE  TFANE+ +N  VRVG
Sbjct: 1   MSDAFCSDCKRATDVVFDHSAGNAVCSECGLVLGSHSIDETSELLTFANESVNNHHVRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
           GPSNPLL                                            I TM+++LG
Sbjct: 61  GPSNPLLI-------------------------------------------IDTMTEKLG 77

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LV TIKDRA EIYK V +QK S+ RNQDALLAACLYIACRQEDKP TVKEI S+A GATK
Sbjct: 78  LVPTIKDRAIEIYKLVANQKYSKARNQDALLAACLYIACRQEDKPHTVKEISSIAIGATK 137

Query: 181 KEIGRAKEYIVKQLGLENG-QSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEE 239
           KEIGRAK+YI+KQL LENG QSVEMGT H GDFM RFCSNLGMN+            SEE
Sbjct: 138 KEIGRAKQYIMKQLALENGGQSVEMGTTHIGDFMGRFCSNLGMNHQAVKAANESVQNSEE 197

Query: 240 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNW 299
           FDIRRSPISIAA VIYIITQLSDDKK LKDISVATGVAEGTIRNSYKDLYP VSKIIP W
Sbjct: 198 FDIRRSPISIAATVIYIITQLSDDKKSLKDISVATGVAEGTIRNSYKDLYPRVSKIIPTW 257

Query: 300 YAKEEDLKNLCSP 312
           YAKEEDLKNLC P
Sbjct: 258 YAKEEDLKNLCIP 270


>Medtr1g023620.1 | hypothetical protein | LC | chr1:7591057-7591855
           | 20130731
          Length = 121

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 49/54 (90%)

Query: 237 SEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYP 290
           SEEFDIRRSPIS AAAVIYII QLSDDKKPLKDISVA G +E TIRNSYKDLYP
Sbjct: 63  SEEFDIRRSPISNAAAVIYIIIQLSDDKKPLKDISVAIGFSEVTIRNSYKDLYP 116


>Medtr5g019910.1 | transcription factor IIB | HC |
           chr5:7553976-7558232 | 20130731
          Length = 487

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 11/199 (5%)

Query: 106 IMAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
           + A+  I  +S  LGL + I D A ++++        R R+ +AL  A L  A R+  +P
Sbjct: 132 LRAYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 191

Query: 166 RTVKEICSVANGATKKEIGRAKEYIVKQLG--LENGQSVEMGTIHAGDFMRRFCSNLGMN 223
           RT++EI S+A    +KEIG+     +K LG  L+  Q +   +I     M RFC+ L +N
Sbjct: 192 RTLQEI-SIAANVAQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLLQLN 244

Query: 224 NXXXXXXXXX--XXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTI 281
                          ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+
Sbjct: 245 KSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 304

Query: 282 RNSYKDLYPHVSKIIPNWY 300
           R  YK+L  +   ++P+ Y
Sbjct: 305 RKVYKELLENWDDLLPSNY 323