Miyakogusa Predicted Gene

Lj3g3v0075720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0075720.1 tr|Q2HVW5|Q2HVW5_MEDTR Nucleoporin interacting
component; Protein prenyltransferase OS=Medicago
trun,91.73,0,SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX PROTEIN
NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN),,CUFF.40306.1
         (855 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103370.1 | nucleoporin interacting component, putative | ...  1473   0.0  

>Medtr2g103370.1 | nucleoporin interacting component, putative | HC
           | chr2:44506815-44496962 | 20130731
          Length = 859

 Score = 1473 bits (3813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/859 (84%), Positives = 752/859 (87%), Gaps = 4/859 (0%)

Query: 1   MANEDLASWSDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEALSKKLKSKTVRAEAPSQSI 60
           MANEDL+SW+DLLHSS+KLLEQAAPSAQFPPLQRNLDQLEALSKKLKSKTVRAEAPSQSI
Sbjct: 1   MANEDLSSWTDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALSKKLKSKTVRAEAPSQSI 60

Query: 61  AATRLLAREGINAEQLARDLKSFELKTTFEDVFPVEATSVEEYLQQVHEMAMVSAVQEAQ 120
           AATRLLAREGINAEQLARDLKSFELKTTFEDVFPVEATSVEEYLQQVHEMAMVSAVQEAQ
Sbjct: 61  AATRLLAREGINAEQLARDLKSFELKTTFEDVFPVEATSVEEYLQQVHEMAMVSAVQEAQ 120

Query: 121 KDNLRSFNDYMMKVLEEDWHKEKRDFLQSLNRISTLPRTNMVTNSNGGTRQGQIVSVAS- 179
           KDNLRSFNDYMMKVLEEDW KEKRDFLQSL+RISTLPRTNM+ NSN GTR GQIVS+AS 
Sbjct: 121 KDNLRSFNDYMMKVLEEDWQKEKRDFLQSLSRISTLPRTNMIANSNVGTRPGQIVSMAST 180

Query: 180 ---NVPSMEVVPFTTRPIAEKKASVYAEVVKNLNRARQSGLPFKPAAAFKGAYESLNIDA 236
              +  SME+VP T+RPIA+KKASVYAEVVKNLNRARQSGLPFK AA FKGAYESL +DA
Sbjct: 181 PQVSSGSMEIVPMTSRPIADKKASVYAEVVKNLNRARQSGLPFKLAATFKGAYESLGVDA 240

Query: 237 SGGKSVTMRKIWHLVQMLMDTDSPLQHVSEKMLLIIGARRHLEWGHEKYIMDTIQSHPAQ 296
            GGKSVTMRKIWHLVQMLMD DS L+ VS++M LIIGARRHLEWGHEKYIMDTI +HPAQ
Sbjct: 241 GGGKSVTMRKIWHLVQMLMDEDSTLRRVSKRMSLIIGARRHLEWGHEKYIMDTIHNHPAQ 300

Query: 297 AALGGGVGNLQRIRAFLRIRLRDYGALDFDAGDARRQPPVDTTWQQIYFCLRSGYYDEAR 356
           A+LGGGVGNLQRIRAFLRIRLRDYG LDFDAGDARRQPPVDTTWQQIYFCLRSGYYDEAR
Sbjct: 301 ASLGGGVGNLQRIRAFLRIRLRDYGVLDFDAGDARRQPPVDTTWQQIYFCLRSGYYDEAR 360

Query: 357 NVALSSRASHQFAPLLTEWINTGGMVXXXXXXXXXXXXXRMLRTGDRVGRAGYDKKKLLL 416
           NVALSSRASHQFAPLLTEWINTGGMV             RMLRTGDRVGR  YDKKKLLL
Sbjct: 361 NVALSSRASHQFAPLLTEWINTGGMVPEEVATAASEECERMLRTGDRVGRTAYDKKKLLL 420

Query: 417 FAIISGSRRHIDRLLRDQPTLFSTIEDFLWFKLSAVRDCPGGSSSIVLSDGLIPYSLDDL 476
           +AIISGSRRHIDRLLRDQPTLFSTIEDFLWFKLSAVRDCP GSSSIVLSDGLIPYSLDDL
Sbjct: 421 YAIISGSRRHIDRLLRDQPTLFSTIEDFLWFKLSAVRDCPSGSSSIVLSDGLIPYSLDDL 480

Query: 477 QIYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLHLSKETGDEGYNIDAAHLSIVLA 536
           Q YLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVL+LSKE GDEGYNIDAAHLSIVLA
Sbjct: 481 QSYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLYLSKEAGDEGYNIDAAHLSIVLA 540

Query: 537 DHGVLSEGAGAGQKLGVMDAYAEVSTIIRQYGSMYLRLGDXXXXXXXXXXXXXXXXXXXX 596
           DHGVLSEG G GQKLGVMDAYAEVSTIIRQYGSMYLRLGD                    
Sbjct: 541 DHGVLSEGIGTGQKLGVMDAYAEVSTIIRQYGSMYLRLGDLQMALEYYAQAAAAVGGGQL 600

Query: 597 SWTGRGNVDQQRQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVTDFKARKQF 656
           SWTGRGNVDQQRQRN                                  FV D  AR+QF
Sbjct: 601 SWTGRGNVDQQRQRNLMLKQLLTELLLRDGGIYLLLGARGAGEEGELGRFVADPNARQQF 660

Query: 657 LYEAACQCQEAGMYDKSIEIQKRVGSFSMALDTINKCLSEAICALFRGRLDGESQTAGLI 716
           L EAACQCQE+GMYDKSIEIQKRVGSFSMALDTINKCLSEAIC+LFRGRLDGES+TAGLI
Sbjct: 661 LIEAACQCQESGMYDKSIEIQKRVGSFSMALDTINKCLSEAICSLFRGRLDGESRTAGLI 720

Query: 717 HSGNEILEAYPYYPDVSPQERIDVFEQQAVLRELESILSIHKLSRLGHHVDALREVAKLP 776
           HSGNEILE Y YYPDVS QER  VFEQQ +LR+LESILSIHKLSRLG+HVDALREVAKLP
Sbjct: 721 HSGNEILETYTYYPDVSHQEREQVFEQQTILRQLESILSIHKLSRLGNHVDALREVAKLP 780

Query: 777 FLPLDPRGPDVAIDVFENLSPHVQACIPDLLKVALTCLDYVTDSDGSLRALRAKIASFIA 836
           FLPLDPRGPD A+DVFENLSPHVQACIPDLLKVALTCLD VTDSDGSLRALRAKI+SFIA
Sbjct: 781 FLPLDPRGPDTAVDVFENLSPHVQACIPDLLKVALTCLDNVTDSDGSLRALRAKISSFIA 840

Query: 837 NNLKRNWPRDLYERVAQRL 855
           NN+KRNWPRDLYERVAQRL
Sbjct: 841 NNVKRNWPRDLYERVAQRL 859