Miyakogusa Predicted Gene

Lj3g3v0075590.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0075590.3 Non Characterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,65.52,0.00000000000004,Pep_deformylase,Formylmethionine
deformylase; seg,NULL; PEPTIDE DEFORMYLASE,Formylmethionine
deformy,CUFF.40265.3
         (275 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103430.1 | peptide deformylase 1A | HC | chr2:44530541-44...   316   2e-86
Medtr4g011040.1 | peptide deformylase 1A | HC | chr4:2587101-259...   310   7e-85
Medtr2g103420.1 | peptide deformylase 1A | LC | chr2:44525698-44...   266   1e-71
Medtr7g035310.1 | peptide deformylase 1A | HC | chr7:13439210-13...    86   6e-17
Medtr7g035310.2 | peptide deformylase 1A | HC | chr7:13439210-13...    85   6e-17

>Medtr2g103430.1 | peptide deformylase 1A | HC |
           chr2:44530541-44526335 | 20130731
          Length = 257

 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/275 (60%), Positives = 190/275 (69%), Gaps = 19/275 (6%)

Query: 1   MAAVQRLAWRFRPAPPLMFALANGVXXXXXXXXXXXXXXXXXXXKQCRPFNSTAXXXXXX 60
           M A +RL WR R  P  M  L+NGV                    +   F ST       
Sbjct: 1   MEAARRLVWRLRAFP--MPVLSNGVVSLSSSSSCNNKIQLSST--KFSKFGSTLSSPSSE 56

Query: 61  XXXKAGWFSGLTLPKVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGL 120
                   +   LP +VKAGDPV+H+PAREVD SE+KS+K+Q IIDDMI VMR APGVG+
Sbjct: 57  TALLRKTVN--KLPYIVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGV 114

Query: 121 AAPQIGLPFRIIVLEDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKL 180
           AAPQIG+P RIIVLEDK+E++ Y+T             E E KAQDRRPFDLLVILNPKL
Sbjct: 115 AAPQIGIPLRIIVLEDKEEFICYNT-------------EEETKAQDRRPFDLLVILNPKL 161

Query: 181 EKKSNRTALFFEGCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDH 240
           + KSNRTA FFEGCLSV  + A+VERYLDVEVTGFDR GEPIKI ASGWQARILQHECDH
Sbjct: 162 KNKSNRTAFFFEGCLSVDRFQALVERYLDVEVTGFDRYGEPIKINASGWQARILQHECDH 221

Query: 241 LDGTLYVDKMLPNTFRTSRNWDMPLAPGCPKLGPR 275
           LDGTLYVDKM+P TFR+ +N D+PLA GCPKLGPR
Sbjct: 222 LDGTLYVDKMVPRTFRSWKNVDLPLARGCPKLGPR 256


>Medtr4g011040.1 | peptide deformylase 1A | HC |
           chr4:2587101-2591364 | 20130731
          Length = 267

 Score =  310 bits (795), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 174/222 (78%), Gaps = 23/222 (10%)

Query: 64  KAGWFSGLT----------LPKVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMR 113
           +AG+F G T          LP  VKAGDPVLH+PA+EVDPSE+ S+KVQKIIDDMIRVMR
Sbjct: 59  RAGFFFGRTKDDKKKKKMDLPDTVKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMR 118

Query: 114 NAPGVGLAAPQIGLPFRIIVLEDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLL 173
            APGVGLAAPQIG+  RIIVLED +E++ Y       P+E+       +KAQDR PFDLL
Sbjct: 119 KAPGVGLAAPQIGVSSRIIVLEDTEEFISY------APKEV-------LKAQDRHPFDLL 165

Query: 174 VILNPKLEKKSNRTALFFEGCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARI 233
           VILNPKL+  S RTALFFEGCLSV G+ AVVER+LDVEVTG DR+GEPIKI ASGWQARI
Sbjct: 166 VILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRNGEPIKITASGWQARI 225

Query: 234 LQHECDHLDGTLYVDKMLPNTFRTSRNWDMPLAPGCPKLGPR 275
           LQHECDHLDGTLYVDKM+P TFRT  N D+PLA GCP LGPR
Sbjct: 226 LQHECDHLDGTLYVDKMVPRTFRTVENMDLPLAQGCPNLGPR 267


>Medtr2g103420.1 | peptide deformylase 1A | LC |
           chr2:44525698-44524200 | 20130731
          Length = 280

 Score =  266 bits (681), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 152/194 (78%), Gaps = 13/194 (6%)

Query: 73  LPKVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRII 132
           LP +V+AGDPVLH+PAREVD SE+ S+K+QKIID MI VMRNAPG+ L+A +IG+P RII
Sbjct: 78  LPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRII 137

Query: 133 VLEDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFE 192
           VLE+ KE + Y+   E+             K  DRRPFDLLVILNPKL+ KSN+T LFFE
Sbjct: 138 VLEEPKENL-YNYTEEVN------------KIIDRRPFDLLVILNPKLKIKSNKTFLFFE 184

Query: 193 GCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLP 252
           GCLSV G+ AVVERYLDVEV GFDR GEPIKI ASGW ARILQHECDHLDGTLYVDKM+P
Sbjct: 185 GCLSVHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVP 244

Query: 253 NTFRTSRNWDMPLA 266
            TFR+  N +M +A
Sbjct: 245 RTFRSWENINMSIA 258


>Medtr7g035310.1 | peptide deformylase 1A | HC |
           chr7:13439210-13432030 | 20130731
          Length = 253

 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 30/185 (16%)

Query: 75  KVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVL 134
           K+ K  DP L +  + +   +   + ++K++D+M  VM    G+GL+APQ+G+  +++V 
Sbjct: 62  KIAKYPDPKLRKKNKRIGTFD---DNLKKLVDEMFDVMYETDGIGLSAPQVGINVQLMV- 117

Query: 135 EDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGC 194
                   ++  GE                  R   + +V++NP++ K+S    ++ EGC
Sbjct: 118 --------FNPVGE------------------RGEGEEIVLVNPRVGKRSLNRTIYNEGC 151

Query: 195 LSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLPNT 254
           LS  G    V+R   V++   D  G+   +  SG  ARI QHE DHL G L+ ++M    
Sbjct: 152 LSFPGIRGDVKRPEYVKIDALDVKGKRFSVSLSGLPARIFQHEFDHLQGILFFERMADEV 211

Query: 255 FRTSR 259
           F + R
Sbjct: 212 FDSIR 216


>Medtr7g035310.2 | peptide deformylase 1A | HC |
           chr7:13439210-13432089 | 20130731
          Length = 222

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 30/185 (16%)

Query: 75  KVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVL 134
           K+ K  DP L +  + +   +   + ++K++D+M  VM    G+GL+APQ+G+  +++V 
Sbjct: 62  KIAKYPDPKLRKKNKRIGTFD---DNLKKLVDEMFDVMYETDGIGLSAPQVGINVQLMVF 118

Query: 135 EDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGC 194
               E      +GE   +EI                   V++NP++ K+S    ++ EGC
Sbjct: 119 NPVGE------RGE--GEEI-------------------VLVNPRVGKRSLNRTIYNEGC 151

Query: 195 LSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLPNT 254
           LS  G    V+R   V++   D  G+   +  SG  ARI QHE DHL G L+ ++M    
Sbjct: 152 LSFPGIRGDVKRPEYVKIDALDVKGKRFSVSLSGLPARIFQHEFDHLQGILFFERMADEV 211

Query: 255 FRTSR 259
           F + R
Sbjct: 212 FDSIR 216