Miyakogusa Predicted Gene
- Lj3g3v0030810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0030810.1 Non Characterized Hit- tr|D7LP21|D7LP21_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.44,1e-17,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene68.1
(458 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g104430.3 | transcription cofactor, putative | LC | chr2:4... 381 e-106
Medtr2g104430.2 | transcription cofactor, putative | LC | chr2:4... 380 e-105
Medtr2g104430.1 | transcription cofactor, putative | LC | chr2:4... 380 e-105
Medtr2g104400.2 | transcription cofactor, putative | HC | chr2:4... 327 2e-89
Medtr2g104400.1 | transcription cofactor, putative | HC | chr2:4... 327 2e-89
Medtr2g104450.1 | mediator of RNA polymerase II transcription su... 287 2e-77
Medtr4g009740.3 | mediator of RNA polymerase II transcription su... 231 9e-61
Medtr4g009740.1 | mediator of RNA polymerase II transcription su... 231 9e-61
Medtr4g009740.2 | mediator of RNA polymerase II transcription su... 231 9e-61
Medtr8g042930.1 | hypothetical protein | LC | chr8:16620261-1661... 81 3e-15
Medtr4g094745.1 | hypothetical protein | LC | chr4:38881364-3887... 74 2e-13
Medtr8g042960.1 | hypothetical protein | LC | chr8:16641595-1663... 56 6e-08
>Medtr2g104430.3 | transcription cofactor, putative | LC |
chr2:44985220-44977384 | 20130731
Length = 529
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/357 (58%), Positives = 246/357 (68%), Gaps = 54/357 (15%)
Query: 59 KKTSLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSK 118
K +SLDST +TG+P+GGDWQEEVYQKIK MKE+YLP+LNE+YQKI TKLQQHDSL Q K
Sbjct: 220 KMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPK 279
Query: 119 SDKLEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQ 178
SD+LEK K+FK+MLER+I+FLQVSKSNI+PS KEKLGSYEKQIINFIN NRPR+ MSSLQ
Sbjct: 280 SDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPRE-MSSLQ 338
Query: 179 HPGHLPPQHMHSMSQSHPQVTQVQPLE--NQINSQMQTTNMQGXXXXXXXXXXXXHGANI 236
PG LPP H HSMSQ+ PQVTQ Q L N +N M+ + G +
Sbjct: 339 -PGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVND-MKMRQVIGVK------------PGV 384
Query: 237 GHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLI 296
QH GN+ P+ GKSTV+E+ +DRL+
Sbjct: 385 FEQHI---------------------------------GNALAPSSGKSTVTEELMDRLV 411
Query: 297 KAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARNFIN 356
KAV SLTP ALS AVSD SV+SM DRI SAPGNGS + G DLVAMTNC LQ RNF+
Sbjct: 412 KAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLP 471
Query: 357 QDGANGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTAT-CIKKPRIQ 409
QDG NG+R+MKRC +ATP + VS AGC+N+SIKQL EASDL+ AT IK+P+I+
Sbjct: 472 QDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIE 528
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 62 SLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDK 121
SLDS QTGQPNGGDWQEE+YQ IK MKE+YLP L+E+ QKI TKLQQHDSL QQ KSD+
Sbjct: 110 SLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDE 169
Query: 122 LEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSL 177
LE K FKM+LER+I+FLQVSKSNI+P KEKLGS EKQIIN IN RP K MSSL
Sbjct: 170 LEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNK-MSSL 224
>Medtr2g104430.2 | transcription cofactor, putative | LC |
chr2:44986197-44977489 | 20130731
Length = 566
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/357 (58%), Positives = 246/357 (68%), Gaps = 54/357 (15%)
Query: 59 KKTSLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSK 118
K +SLDST +TG+P+GGDWQEEVYQKIK MKE+YLP+LNE+YQKI TKLQQHDSL Q K
Sbjct: 257 KMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPK 316
Query: 119 SDKLEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQ 178
SD+LEK K+FK+MLER+I+FLQVSKSNI+PS KEKLGSYEKQIINFIN NRPR+ MSSLQ
Sbjct: 317 SDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPRE-MSSLQ 375
Query: 179 HPGHLPPQHMHSMSQSHPQVTQVQPLE--NQINSQMQTTNMQGXXXXXXXXXXXXHGANI 236
PG LPP H HSMSQ+ PQVTQ Q L N +N M+ + G +
Sbjct: 376 -PGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVND-MKMRQVIGVK------------PGV 421
Query: 237 GHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLI 296
QH GN+ P+ GKSTV+E+ +DRL+
Sbjct: 422 FEQHI---------------------------------GNALAPSSGKSTVTEELMDRLV 448
Query: 297 KAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARNFIN 356
KAV SLTP ALS AVSD SV+SM DRI SAPGNGS + G DLVAMTNC LQ RNF+
Sbjct: 449 KAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLP 508
Query: 357 QDGANGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTAT-CIKKPRIQ 409
QDG NG+R+MKRC +ATP + VS AGC+N+SIKQL EASDL+ AT IK+P+I+
Sbjct: 509 QDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIE 565
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 62 SLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDK 121
SLDS QTGQPNGGDWQEE+YQ IK MKE+YLP L+E+ QKI TKLQQHDSL QQ KSD+
Sbjct: 147 SLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDE 206
Query: 122 LEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSL 177
LE K FKM+LER+I+FLQVSKSNI+P KEKLGS EKQIIN IN RP K MSSL
Sbjct: 207 LEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNK-MSSL 261
>Medtr2g104430.1 | transcription cofactor, putative | LC |
chr2:44986197-44977489 | 20130731
Length = 576
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/357 (58%), Positives = 246/357 (68%), Gaps = 54/357 (15%)
Query: 59 KKTSLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSK 118
K +SLDST +TG+P+GGDWQEEVYQKIK MKE+YLP+LNE+YQKI TKLQQHDSL Q K
Sbjct: 267 KMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPK 326
Query: 119 SDKLEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQ 178
SD+LEK K+FK+MLER+I+FLQVSKSNI+PS KEKLGSYEKQIINFIN NRPR+ MSSLQ
Sbjct: 327 SDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPRE-MSSLQ 385
Query: 179 HPGHLPPQHMHSMSQSHPQVTQVQPLE--NQINSQMQTTNMQGXXXXXXXXXXXXHGANI 236
PG LPP H HSMSQ+ PQVTQ Q L N +N M+ + G +
Sbjct: 386 -PGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVND-MKMRQVIGVK------------PGV 431
Query: 237 GHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLI 296
QH GN+ P+ GKSTV+E+ +DRL+
Sbjct: 432 FEQHI---------------------------------GNALAPSSGKSTVTEELMDRLV 458
Query: 297 KAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARNFIN 356
KAV SLTP ALS AVSD SV+SM DRI SAPGNGS + G DLVAMTNC LQ RNF+
Sbjct: 459 KAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLP 518
Query: 357 QDGANGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTAT-CIKKPRIQ 409
QDG NG+R+MKRC +ATP + VS AGC+N+SIKQL EASDL+ AT IK+P+I+
Sbjct: 519 QDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIE 575
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 62 SLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDK 121
SLDS QTGQPNGGDWQEE+YQ IK MKE+YLP L+E+ QKI TKLQQHDSL QQ KSD+
Sbjct: 157 SLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDE 216
Query: 122 LEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSL 177
LE K FKM+LER+I+FLQVSKSNI+P KEKLGS EKQIIN IN RP K MSSL
Sbjct: 217 LEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNK-MSSL 271
>Medtr2g104400.2 | transcription cofactor, putative | HC |
chr2:44969382-44960684 | 20130731
Length = 1252
Score = 327 bits (838), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/210 (76%), Positives = 177/210 (84%), Gaps = 3/210 (1%)
Query: 234 ANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLD 293
AN+GHQ TG A AQSLAIGT GISA P AEFTGPDG HGN+ P+ GKSTV+E+P+D
Sbjct: 910 ANVGHQQTGSGAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPSSGKSTVTEEPMD 969
Query: 294 RLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARN 353
RLIKAV SLTP ALS AVSDI SV+SMNDRI GSAPGNGS+AA G DLVAMTNCRLQARN
Sbjct: 970 RLIKAVSSLTPAALSAAVSDISSVISMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARN 1029
Query: 354 FINQDGANGTRRMKRCTHATPLNDVSYAGCLNNSIK--QLEASDLDSTATC-IKKPRIQT 410
FI QDGANGTRRMKRCT+ATPLN VS AG +N+SIK +EASDL+STAT IKKP+ +
Sbjct: 1030 FITQDGANGTRRMKRCTNATPLNVVSSAGSVNDSIKLNGMEASDLESTATSNIKKPKFEA 1089
Query: 411 NHALLEEIREVNQRLIDTVVDISDEEIDPT 440
NHALLEEIREVNQRLIDTVV ISDEE+D T
Sbjct: 1090 NHALLEEIREVNQRLIDTVVSISDEEVDQT 1119
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/200 (74%), Positives = 168/200 (84%), Gaps = 5/200 (2%)
Query: 20 RDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSRKKTSLDSTTQTGQPNGGDWQE 79
RDM +RLQASGSL V DQQKQ+ QSQRPLP+ SS S+DST QTGQ +GGDWQE
Sbjct: 448 RDMQQRLQASGSLLQQSGVFDQQKQIYQSQRPLPETSSN---SMDSTAQTGQTSGGDWQE 504
Query: 80 EVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFL 139
EVYQKIK MKE+YLP+L+E+YQKI TKL QHDSL Q KSD+LEK K+FKMMLER+I+FL
Sbjct: 505 EVYQKIKAMKESYLPELSEMYQKIATKLHQHDSLPHQPKSDQLEKLKVFKMMLERLITFL 564
Query: 140 QVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVT 199
QVSKSNI+PS KEKLGSYEKQIINFIN NRPRK +SSLQ PG LPP HMHSMSQ+ PQ T
Sbjct: 565 QVSKSNISPSLKEKLGSYEKQIINFINTNRPRK-ISSLQ-PGQLPPPHMHSMSQTQPQAT 622
Query: 200 QVQPLENQINSQMQTTNMQG 219
QVQ ENQ+N+Q+QTTNMQG
Sbjct: 623 QVQSHENQMNTQLQTTNMQG 642
>Medtr2g104400.1 | transcription cofactor, putative | HC |
chr2:44970630-44960684 | 20130731
Length = 1289
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/210 (76%), Positives = 177/210 (84%), Gaps = 3/210 (1%)
Query: 234 ANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLD 293
AN+GHQ TG A AQSLAIGT GISA P AEFTGPDG HGN+ P+ GKSTV+E+P+D
Sbjct: 947 ANVGHQQTGSGAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPSSGKSTVTEEPMD 1006
Query: 294 RLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARN 353
RLIKAV SLTP ALS AVSDI SV+SMNDRI GSAPGNGS+AA G DLVAMTNCRLQARN
Sbjct: 1007 RLIKAVSSLTPAALSAAVSDISSVISMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARN 1066
Query: 354 FINQDGANGTRRMKRCTHATPLNDVSYAGCLNNSIK--QLEASDLDSTATC-IKKPRIQT 410
FI QDGANGTRRMKRCT+ATPLN VS AG +N+SIK +EASDL+STAT IKKP+ +
Sbjct: 1067 FITQDGANGTRRMKRCTNATPLNVVSSAGSVNDSIKLNGMEASDLESTATSNIKKPKFEA 1126
Query: 411 NHALLEEIREVNQRLIDTVVDISDEEIDPT 440
NHALLEEIREVNQRLIDTVV ISDEE+D T
Sbjct: 1127 NHALLEEIREVNQRLIDTVVSISDEEVDQT 1156
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/200 (74%), Positives = 168/200 (84%), Gaps = 5/200 (2%)
Query: 20 RDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSRKKTSLDSTTQTGQPNGGDWQE 79
RDM +RLQASGSL V DQQKQ+ QSQRPLP+ SS S+DST QTGQ +GGDWQE
Sbjct: 485 RDMQQRLQASGSLLQQSGVFDQQKQIYQSQRPLPETSS---NSMDSTAQTGQTSGGDWQE 541
Query: 80 EVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFL 139
EVYQKIK MKE+YLP+L+E+YQKI TKL QHDSL Q KSD+LEK K+FKMMLER+I+FL
Sbjct: 542 EVYQKIKAMKESYLPELSEMYQKIATKLHQHDSLPHQPKSDQLEKLKVFKMMLERLITFL 601
Query: 140 QVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVT 199
QVSKSNI+PS KEKLGSYEKQIINFIN NRPRK +SSLQ PG LPP HMHSMSQ+ PQ T
Sbjct: 602 QVSKSNISPSLKEKLGSYEKQIINFINTNRPRK-ISSLQ-PGQLPPPHMHSMSQTQPQAT 659
Query: 200 QVQPLENQINSQMQTTNMQG 219
QVQ ENQ+N+Q+QTTNMQG
Sbjct: 660 QVQSHENQMNTQLQTTNMQG 679
>Medtr2g104450.1 | mediator of RNA polymerase II transcription
subunit 15a, putative | LC | chr2:44992964-44991382 |
20130731
Length = 241
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/289 (55%), Positives = 188/289 (65%), Gaps = 50/289 (17%)
Query: 63 LDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKL 122
+DST TGQP+G DWQEEVYQKIK MKE+YLP+LN +YQKI TKLQQHDSL Q KSD++
Sbjct: 1 MDSTAHTGQPSGSDWQEEVYQKIKAMKESYLPELNWMYQKIATKLQQHDSLPHQPKSDQI 60
Query: 123 EKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGH 182
EK K+FKMML+R+++FLQVSKS+I+P+ KEKLGSYE QIINFIN NRPR+ MSSLQ PG
Sbjct: 61 EKLKVFKMMLDRLLTFLQVSKSSISPNLKEKLGSYENQIINFINTNRPRE-MSSLQ-PGK 118
Query: 183 LPPQHMHSMSQSHPQVTQVQPLE--NQINSQMQTTNMQGXXXXXXXXXXXXHGANIGHQH 240
LPP HMHSMSQ+ PQVTQ Q L N +N M+ + G I QH
Sbjct: 119 LPPPHMHSMSQTQPQVTQRQQLHQMNDVND-MRMGQIIGVKQ------------GILEQH 165
Query: 241 TGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLIKAVK 300
GN+ P+ GKSTV+E+ +D LIKAV
Sbjct: 166 I---------------------------------GNALAPSSGKSTVTEELMDHLIKAVS 192
Query: 301 SLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRL 349
SLTP ALS AVSDI SV+SM DRI SA GNGS + DLVAMTNC L
Sbjct: 193 SLTPVALSAAVSDISSVISMIDRIAASASGNGSIVSVCEDLVAMTNCHL 241
>Medtr4g009740.3 | mediator of RNA polymerase II transcription subunit
15a, putative | HC | chr4:2035207-2046451 | 20130731
Length = 1290
Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 157/215 (73%), Gaps = 11/215 (5%)
Query: 232 HGANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQP 291
+ AN+G AA AQSLAIGT GISA P AEF+GPDG N+ GKST ++ P
Sbjct: 942 NAANVGQN----AAAPAQSLAIGTPGISASPLLAEFSGPDGTFCNALGAPSGKST-ADHP 996
Query: 292 LDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQA 351
+DRLI+AV+S++ L+ AVSDI SVVSM+DRI GSAPGNGS+AA G DLV+MTNCRLQA
Sbjct: 997 IDRLIRAVQSMSTETLTAAVSDISSVVSMSDRISGSAPGNGSRAAVGEDLVSMTNCRLQA 1056
Query: 352 RNFINQDGA--NGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTATC-IKK 405
R+FI QDG NG R+ KR L+ S AG +N+++KQL EAS +STAT +KK
Sbjct: 1057 RSFITQDGGTTNGIRKFKRHIRGKTLDVGSSAGSMNDNLKQLSASEASQQESTATSNVKK 1116
Query: 406 PRIQTNHALLEEIREVNQRLIDTVVDISDEEIDPT 440
P+ + NHALLEE++++N+RLIDT+VDIS E++D T
Sbjct: 1117 PKAEVNHALLEELQQINRRLIDTIVDISTEDVDST 1151
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
Query: 20 RDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSRKKTSLDSTTQTGQPNGGDWQE 79
RDM ++LQASGSL QSVLDQQKQL QSQR LP+ S+ S TTQT QPNG DWQE
Sbjct: 477 RDMQQKLQASGSLLQQQSVLDQQKQLYQSQRALPETSTTSVDS---TTQTAQPNGVDWQE 533
Query: 80 EVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFL 139
E+YQK++TMKE YLP++NE+YQKI K+ Q DS+ QQ KSD++EK K +K M ERMIS L
Sbjct: 534 EIYQKLQTMKETYLPEINEIYQKISMKVHQFDSIPQQPKSDQIEKLKGYKTMFERMISIL 593
Query: 140 QVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVT 199
Q+ KS+I KEKLGSYEKQI IN RPRK MSSLQ PG LP HM M QS QVT
Sbjct: 594 QIPKSSIQYGVKEKLGSYEKQIAAAINQFRPRKAMSSLQ-PGQLPATHMALMPQSQSQVT 652
Query: 200 QVQPLENQINSQMQTTNMQG 219
VQ ENQ+NSQMQ TN+QG
Sbjct: 653 SVQSHENQMNSQMQPTNLQG 672
>Medtr4g009740.1 | mediator of RNA polymerase II transcription subunit
15a, putative | HC | chr4:2035215-2046451 | 20130731
Length = 1290
Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 157/215 (73%), Gaps = 11/215 (5%)
Query: 232 HGANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQP 291
+ AN+G AA AQSLAIGT GISA P AEF+GPDG N+ GKST ++ P
Sbjct: 942 NAANVGQN----AAAPAQSLAIGTPGISASPLLAEFSGPDGTFCNALGAPSGKST-ADHP 996
Query: 292 LDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQA 351
+DRLI+AV+S++ L+ AVSDI SVVSM+DRI GSAPGNGS+AA G DLV+MTNCRLQA
Sbjct: 997 IDRLIRAVQSMSTETLTAAVSDISSVVSMSDRISGSAPGNGSRAAVGEDLVSMTNCRLQA 1056
Query: 352 RNFINQDGA--NGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTATC-IKK 405
R+FI QDG NG R+ KR L+ S AG +N+++KQL EAS +STAT +KK
Sbjct: 1057 RSFITQDGGTTNGIRKFKRHIRGKTLDVGSSAGSMNDNLKQLSASEASQQESTATSNVKK 1116
Query: 406 PRIQTNHALLEEIREVNQRLIDTVVDISDEEIDPT 440
P+ + NHALLEE++++N+RLIDT+VDIS E++D T
Sbjct: 1117 PKAEVNHALLEELQQINRRLIDTIVDISTEDVDST 1151
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
Query: 20 RDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSRKKTSLDSTTQTGQPNGGDWQE 79
RDM ++LQASGSL QSVLDQQKQL QSQR LP+ S+ S TTQT QPNG DWQE
Sbjct: 477 RDMQQKLQASGSLLQQQSVLDQQKQLYQSQRALPETSTTSVDS---TTQTAQPNGVDWQE 533
Query: 80 EVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFL 139
E+YQK++TMKE YLP++NE+YQKI K+ Q DS+ QQ KSD++EK K +K M ERMIS L
Sbjct: 534 EIYQKLQTMKETYLPEINEIYQKISMKVHQFDSIPQQPKSDQIEKLKGYKTMFERMISIL 593
Query: 140 QVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVT 199
Q+ KS+I KEKLGSYEKQI IN RPRK MSSLQ PG LP HM M QS QVT
Sbjct: 594 QIPKSSIQYGVKEKLGSYEKQIAAAINQFRPRKAMSSLQ-PGQLPATHMALMPQSQSQVT 652
Query: 200 QVQPLENQINSQMQTTNMQG 219
VQ ENQ+NSQMQ TN+QG
Sbjct: 653 SVQSHENQMNSQMQPTNLQG 672
>Medtr4g009740.2 | mediator of RNA polymerase II transcription subunit
15a, putative | HC | chr4:2035207-2046451 | 20130731
Length = 1290
Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 157/215 (73%), Gaps = 11/215 (5%)
Query: 232 HGANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQP 291
+ AN+G AA AQSLAIGT GISA P AEF+GPDG N+ GKST ++ P
Sbjct: 942 NAANVGQN----AAAPAQSLAIGTPGISASPLLAEFSGPDGTFCNALGAPSGKST-ADHP 996
Query: 292 LDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQA 351
+DRLI+AV+S++ L+ AVSDI SVVSM+DRI GSAPGNGS+AA G DLV+MTNCRLQA
Sbjct: 997 IDRLIRAVQSMSTETLTAAVSDISSVVSMSDRISGSAPGNGSRAAVGEDLVSMTNCRLQA 1056
Query: 352 RNFINQDGA--NGTRRMKRCTHATPLNDVSYAGCLNNSIKQL---EASDLDSTATC-IKK 405
R+FI QDG NG R+ KR L+ S AG +N+++KQL EAS +STAT +KK
Sbjct: 1057 RSFITQDGGTTNGIRKFKRHIRGKTLDVGSSAGSMNDNLKQLSASEASQQESTATSNVKK 1116
Query: 406 PRIQTNHALLEEIREVNQRLIDTVVDISDEEIDPT 440
P+ + NHALLEE++++N+RLIDT+VDIS E++D T
Sbjct: 1117 PKAEVNHALLEELQQINRRLIDTIVDISTEDVDST 1151
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
Query: 20 RDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSRKKTSLDSTTQTGQPNGGDWQE 79
RDM ++LQASGSL QSVLDQQKQL QSQR LP+ S+ S TTQT QPNG DWQE
Sbjct: 477 RDMQQKLQASGSLLQQQSVLDQQKQLYQSQRALPETSTTSVDS---TTQTAQPNGVDWQE 533
Query: 80 EVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFL 139
E+YQK++TMKE YLP++NE+YQKI K+ Q DS+ QQ KSD++EK K +K M ERMIS L
Sbjct: 534 EIYQKLQTMKETYLPEINEIYQKISMKVHQFDSIPQQPKSDQIEKLKGYKTMFERMISIL 593
Query: 140 QVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVT 199
Q+ KS+I KEKLGSYEKQI IN RPRK MSSLQ PG LP HM M QS QVT
Sbjct: 594 QIPKSSIQYGVKEKLGSYEKQIAAAINQFRPRKAMSSLQ-PGQLPATHMALMPQSQSQVT 652
Query: 200 QVQPLENQINSQMQTTNMQG 219
VQ ENQ+NSQMQ TN+QG
Sbjct: 653 SVQSHENQMNSQMQPTNLQG 672
>Medtr8g042930.1 | hypothetical protein | LC |
chr8:16620261-16615808 | 20130731
Length = 566
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 154/378 (40%), Gaps = 55/378 (14%)
Query: 68 QTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKL 127
+ G DWQE+VY++++ +KE Y P ++ +++K+ LQ S +K D L+K++
Sbjct: 102 EAGTDANIDWQEDVYKRLQLLKEKYYPLVHAIHKKLCKGLQAESSTQVLNKGD-LKKFRY 160
Query: 128 FKMMLERMISFLQVSKSNIAPSFKE---KLGSYEKQIIN-FININRPRK-GMSSLQHPGH 182
+ +E + S ++SKS I K+ K+ Y + ++ F+ N+ + S Q
Sbjct: 161 HRSGIEDLFSLFELSKSQITTDMKDQATKVDDYVQLLLKIFMKPNKQESPDVQSKQQNNT 220
Query: 183 LPPQHMHSMSQSHPQVTQVQP---LENQINSQMQTTNMQGXXXXXXXXXXXXHGANIGHQ 239
H +M Q + P ++ N+ Q TN+ G + +
Sbjct: 221 FIQDHRVAMPIGSSQRGIINPPSIVKGPGNAVEQKTNI------------SLQGFGVSNN 268
Query: 240 HTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLIKAV 299
+ A T IS E + D S PTLG + + + RLIK +
Sbjct: 269 APRISETEAFGKHANTQRISPLKEESNNQNQD-----SQKPTLGSEELCPE-MQRLIKVI 322
Query: 300 KSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARNFINQDG 359
S++P ALS AV DI VV +ND I F + +G
Sbjct: 323 TSMSPEALSAAVGDIEKVVRLNDEI---------------------------PTFTSPEG 355
Query: 360 ANGTRRMKRCTHATPLNDVSYAGCLNNSIKQLEASDLDSTATCIKKPRIQTNHALLEEIR 419
R T TP + G N + A + DS K P N +L EI+
Sbjct: 356 WKMPRSFVATTFDTP-GVCASIGEGFNQFTDVAAPEPDSFTMKGKCPPAVENQNILAEIK 414
Query: 420 EVNQRLIDTVVDISDEEI 437
++N RL D+ V I+ +EI
Sbjct: 415 DINNRLFDSEVVIAKKEI 432
>Medtr4g094745.1 | hypothetical protein | LC |
chr4:38881364-38876759 | 20130731
Length = 582
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 162/407 (39%), Gaps = 57/407 (14%)
Query: 69 TGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLF 128
+G DW+E VY+K++ +KEN+ + YQ + T LQ D Q S +LE Y+
Sbjct: 99 SGTDANNDWREVVYKKLQFLKENFYSAIQPNYQNLCTVLQA-DPSTQVLSSIELETYRYH 157
Query: 129 KMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHM 188
K +E+++S ++SKS I K + + +++ PR + P + H+
Sbjct: 158 KSEIEKILSLFELSKSQITADIKNRTIKAHRYLLSL-----PRTS----EQPNNQQSPHV 208
Query: 189 HSMSQ---------SHPQVTQVQ--PLENQINSQ----------MQTTNMQGXXXXXXXX 227
Q SHP + +++ P N + Q Q M
Sbjct: 209 QLKQQFFGPSNSTLSHPVIFKMKLSPFTNNMYLQDHGVAMPIGSSQRGIMNQSSIVTGTD 268
Query: 228 XXXXHGANIGHQHTGCAAV------AAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPT 281
N+ + + CA++ A + TS P E + V S PT
Sbjct: 269 NAVQQQTNVAFKES-CASINAPRISATEQFGASTSTEKISPLIKENNNQNQV---SQKPT 324
Query: 282 LGKSTVSEQPLDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADL 341
LG S + R++ + S++P ALS V I VV +ND I G+ N +
Sbjct: 325 LG-SEEQNPAIQRMLNVLTSISPEALSQGVGGIKEVVRLNDEIPGAELLN--------QM 375
Query: 342 VAMTNCRLQARNFINQDGANGTRRMKRCTHATPLNDVSYAGCLNNSIKQLEASDLDSTAT 401
M + L F + T+ P++D N EA DL+S+
Sbjct: 376 PEMVD-ELGLPTFTIPEAWKMPHSFVATTYDIPMHD-----AFNQFADSAEA-DLNSSTM 428
Query: 402 CIKKPRIQTNHALLEEIREVNQRLIDTVVDISDEEIDPTAAAACLSL 448
K P+ N +L EI+++N +L D V I+++E +A L +
Sbjct: 429 KGKCPQTVKNQNILAEIKDINNQLFDCEVVIAEQENVESAVGLLLKI 475
>Medtr8g042960.1 | hypothetical protein | LC |
chr8:16641595-16636790 | 20130731
Length = 750
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 27/273 (9%)
Query: 60 KTSLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKS 119
K+ L + +G D QE++YQ+++ +K+ Y P ++ ++++ LQ +S + S
Sbjct: 134 KSLLTIPSASGTDENVDVQEQIYQRLQFLKKKYYPLIHAIHRRSCRALQ-GESPTRVLNS 192
Query: 120 DKLEKYKLFKMMLERMISFLQVSKSNIAPSFKE---KLGSYEKQIIN-FININRPRK-GM 174
++E ++ K +E + ++SKS K+ K Y + ++ F+ N+ R +
Sbjct: 193 RQVENFRNHKRAIEDIFPLFELSKSQFTNDMKDRAIKADQYIQYLVKIFMQSNKQRSPDV 252
Query: 175 SSLQHPGHLPPQHMHSM---SQSHPQVTQVQPLENQINSQMQTTNMQGXXXXXXXXXXXX 231
S Q H +M S H + Q ++ N+ Q TN+
Sbjct: 253 QSKQQNNTFIQDHRVAMPTGSSQHGIINQPSVVKGPGNAVEQQTNI------------SL 300
Query: 232 HGANIGHQHTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQP 291
G + + + A T IS P E + V S PTLG +S +
Sbjct: 301 QGIGVSNNAPRISETEAFGKHTNTQRIS--PLIEEINNHNQV---SQKPTLGSEELSPE- 354
Query: 292 LDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRI 324
+ RLIKA+ S++P A AV DI VV MND I
Sbjct: 355 MQRLIKAMTSISPQARRAAVGDIEKVVRMNDEI 387