Miyakogusa Predicted Gene

Lj3g3v0028550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0028550.1 Non Characterized Hit- tr|I1HYJ0|I1HYJ0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,36.56,5e-19,zf-RanBP,Zinc finger, RanBP2-type; Zinc finger
domain,Zinc finger, RanBP2-type; Ran BP2/NZF zinc fin,CUFF.40209.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC ...   224   2e-59
Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC ...   204   3e-53
Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC ...   124   2e-29
Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC ...   101   3e-22
Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC ...    75   2e-14
Medtr6g069400.1 | zinc finger (Ran-binding) family protein | HC ...    60   5e-10
Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC ...    50   8e-07
Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC ...    49   1e-06
Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC ...    49   1e-06

>Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:46857090-46858933 | 20130731
          Length = 140

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 115/140 (82%)

Query: 1   MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCG 60
           MSWSGGDWMCGAC+H+NFKKRE CQ+C YPKYGGPDP+TYRYNRTETLAGDW+C++MNCG
Sbjct: 1   MSWSGGDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTETLAGDWFCTSMNCG 60

Query: 61  AHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHN 120
           AHNYASRSNCYRCG  +D                  DCS PPGWKSGDWICPRIGCG+HN
Sbjct: 61  AHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYGSDCSSPPGWKSGDWICPRIGCGIHN 120

Query: 121 YASRAECFKCKMPRDFGGED 140
           YASR EC+KCKMPRD+GG D
Sbjct: 121 YASRTECYKCKMPRDYGGAD 140


>Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC |
           chr2:23383920-23382437 | 20130731
          Length = 128

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 109/140 (77%), Gaps = 12/140 (8%)

Query: 1   MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCG 60
           MSWSGGDWMC ACQH+NFKKR+ CQ+C YPK GGPDP TYRYN TETLAGDWYCS MNCG
Sbjct: 1   MSWSGGDWMCNACQHINFKKRDACQNCGYPKIGGPDPETYRYNWTETLAGDWYCSGMNCG 60

Query: 61  AHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHN 120
           AHNYASR++CYRCG +++D                 DC++PPGWK+GDWIC R GCGVHN
Sbjct: 61  AHNYASRTSCYRCGALKND------------NSYGSDCNYPPGWKTGDWICTRYGCGVHN 108

Query: 121 YASRAECFKCKMPRDFGGED 140
           YASR ECFKCK P+ FGG D
Sbjct: 109 YASRGECFKCKTPKSFGGSD 128


>Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:2646573-2643799 | 20130731
          Length = 147

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 79/141 (56%), Gaps = 11/141 (7%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPKYG-----GPDPATYRYNRT------ETLAGDWYC 54
           GDW C +CQH+NF++RE CQ C   KYG     G      R   +      +   GDWYC
Sbjct: 5   GDWNCRSCQHMNFQRRESCQRCGDSKYGERVDYGSVFGGIRGGSSFGLSGSDVRLGDWYC 64

Query: 55  SAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRI 114
            A NCGAHN+ASR +C++CG  +DD                   S  PGWKSGDWIC R+
Sbjct: 65  GAGNCGAHNFASRLSCFKCGAFKDDLAGGGYNNSDILLSRGFGGSTRPGWKSGDWICNRL 124

Query: 115 GCGVHNYASRAECFKCKMPRD 135
           GC  HN+ASR ECFKC  PRD
Sbjct: 125 GCNEHNFASRMECFKCSAPRD 145


>Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49624495 | 20130731
          Length = 170

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 77/159 (48%), Gaps = 32/159 (20%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPK---------YGG----------PDPATYRYNRTE 46
           GDW C  C H+NF++RE CQ C   +         +GG          P P T      +
Sbjct: 5   GDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFT---TGPD 61

Query: 47  TLAGDWYCSAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXX----------X 96
              GDWYC+  NCGAHN+ASRS+C++CG  +D                            
Sbjct: 62  VRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGAGSAGG 121

Query: 97  DCSFPPGWKSGDWICPRIGCGVHNYASRAECFKCKMPRD 135
             S  PGWKSGDWIC R GC  HN+A+R EC++C  PRD
Sbjct: 122 GASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRD 160


>Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49625045 | 20130731
          Length = 175

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 61/138 (44%), Gaps = 32/138 (23%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPK---------YGG----------PDPATYRYNRTE 46
           GDW C  C H+NF++RE CQ C   +         +GG          P P T      +
Sbjct: 5   GDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFT---TGPD 61

Query: 47  TLAGDWYCSAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXX----------X 96
              GDWYC+  NCGAHN+ASRS+C++CG  +D                            
Sbjct: 62  VRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGAGSAGG 121

Query: 97  DCSFPPGWKSGDWICPRI 114
             S  PGWKSGDWIC R 
Sbjct: 122 GASTRPGWKSGDWICTRF 139



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 50  GDWYCSAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCS-FP----PGW 104
           GDW C    C   N+  R +C RCG  R                     S FP    P  
Sbjct: 5   GDWNCRT--CNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGPDV 62

Query: 105 KSGDWICPRIGCGVHNYASRAECFKCKMPRDF 136
           + GDW C    CG HN+ASR+ CFKC  P+D 
Sbjct: 63  RPGDWYCTVGNCGAHNFASRSSCFKCGAPKDI 94


>Medtr6g069400.1 | zinc finger (Ran-binding) family protein | HC |
           chr6:24975567-24969959 | 20130731
          Length = 470

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 1   MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCG 60
           +    GDW+C  C  +NF +  +C +C        DP T+     E   GDW C+   C 
Sbjct: 265 VEMKKGDWVCQKCNFMNFSRNRKCLNCEEDGPKSDDPRTF-----EMKEGDWICT--ECN 317

Query: 61  AHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHN 120
             N++    C  C T                             K GDW CP+  CG  N
Sbjct: 318 FMNFSRNITCLECKTEGPKRVNRLDTNEVQ-------------MKKGDWTCPQ--CGFMN 362

Query: 121 YASRAECFKCKMPR 134
           +AS  +CFKC  PR
Sbjct: 363 FASNVKCFKCPEPR 376



 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 36/139 (25%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPAT-YRYNRTETLAGDWYCSAMNCGAHNY 64
           GDW+C  C  +NF +   C  C   K  GP        N  +   GDW C    CG  N+
Sbjct: 309 GDWICTECNFMNFSRNITCLEC---KTEGPKRVNRLDTNEVQMKKGDWTCP--QCGFMNF 363

Query: 65  ASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHNYASR 124
           AS   C++C   R                        P    GDW CP+  C   N+AS+
Sbjct: 364 ASNVKCFKCPEPR------------------------PKKHPGDWSCPK--CDFMNFASK 397

Query: 125 AECFKCKM----PRDFGGE 139
            +CF+C+     P  + GE
Sbjct: 398 DKCFRCQESNPNPNKYPGE 416


>Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 278

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSA-------MN 58
           GDW+C  C + N+  RE+C+ C  PK     PA      + +    ++          MN
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMN 109

Query: 59  CGA-----------HNYA-SRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKS 106
            G             NY    +   + G                          P GW++
Sbjct: 110 IGLIGNGGPPQSLNLNYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQNPNGWRN 169

Query: 107 GDWICPRIGCGVHNYASRAECFKC 130
           GDW+C    CG HNY+SRA+C KC
Sbjct: 170 GDWVC---NCGFHNYSSRAQCKKC 190


>Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 325

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSA-------MN 58
           GDW+C  C + N+  RE+C+ C  PK     PA      + +    ++          MN
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMN 109

Query: 59  CGA-----------HNYA-SRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKS 106
            G             NY    +   + G                          P GW++
Sbjct: 110 IGLIGNGGPPQSLNLNYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQNPNGWRN 169

Query: 107 GDWICPRIGCGVHNYASRAECFKC 130
           GDW+C    CG HNY+SRA+C KC
Sbjct: 170 GDWVC---NCGFHNYSSRAQCKKC 190


>Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 316

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 6   GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSA-------MN 58
           GDW+C  C + N+  RE+C+ C  PK     PA      + +    ++          MN
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMN 109

Query: 59  CGA-----------HNYA-SRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKS 106
            G             NY    +   + G                          P GW++
Sbjct: 110 IGLIGNGGPPQSLNLNYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQNPNGWRN 169

Query: 107 GDWICPRIGCGVHNYASRAECFKC 130
           GDW+C    CG HNY+SRA+C KC
Sbjct: 170 GDWVC---NCGFHNYSSRAQCKKC 190