Miyakogusa Predicted Gene

Lj3g3v0017520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0017520.1 tr|G7JFP1|G7JFP1_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_4g009200 PE=3
SV=1,38.5,0.000000000000001,seg,NULL,CUFF.40203.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g104770.2 | hypothetical protein | HC | chr2:45147880-4514...   103   8e-23
Medtr2g104770.1 | hypothetical protein | HC | chr2:45147623-4514...    71   4e-13
Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-17842...    52   2e-07

>Medtr2g104770.2 | hypothetical protein | HC |
           chr2:45147880-45144017 | 20130731
          Length = 249

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 14/156 (8%)

Query: 1   MCDHDDWVNLAMADDSTVAGX---XXXXXXXXXXXXXWTVRQRRSTHKXXXXXXXXXXXX 57
           MCD+D WVNLAMA+DS VA                  WT+RQ RS               
Sbjct: 75  MCDYD-WVNLAMANDSIVANLLLHFNNPPPPPSLQLHWTIRQPRSRSIPKSESSIR---- 129

Query: 58  XLSWSGAATSVSCGANNVDSHEEESSHLTKHAG--ASRSDKVANPSETVTTKKARRKKEL 115
               +   T ++C  +   S  EES+  TK     +SRS  +ANP ETV T+  +RKKEL
Sbjct: 130 ----ASPTTPLTCSWSATTSASEESNLPTKLITKTSSRSKVIANPKETVITRNPKRKKEL 185

Query: 116 ASLRITVDQQIATNESLKKMKLDLDLRQNSNTTTTS 151
           ASLR++V+++ ATNESLK+MKLDL+ +QNS+T+  S
Sbjct: 186 ASLRLSVEKERATNESLKRMKLDLESQQNSSTSNAS 221


>Medtr2g104770.1 | hypothetical protein | HC |
           chr2:45147623-45144481 | 20130731
          Length = 186

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 34/166 (20%)

Query: 12  MADDSTVAGX---XXXXXXXXXXXXXWTVRQRRSTHKXXXXXXXXXXXXXLSWSGAATSV 68
           MA+DS VA                  WT+RQ RS                   +   T +
Sbjct: 1   MANDSIVANLLLHFNNPPPPPSLQLHWTIRQPRSRSIPKSESSIR--------ASPTTPL 52

Query: 69  SCGANNVDSHEEESSHLTKHAG--ASRSDKVANPSETVTTKKARRKK------------- 113
           +C  +   S  EES+  TK     +SRS  +ANP ETV T+  +RKK             
Sbjct: 53  TCSWSATTSASEESNLPTKLITKTSSRSKVIANPKETVITRNPKRKKTLAELKEEESLLL 112

Query: 114 --------ELASLRITVDQQIATNESLKKMKLDLDLRQNSNTTTTS 151
                   ELASLR++V+++ ATNESLK+MKLDL+ +QNS+T+  S
Sbjct: 113 KERINLKNELASLRLSVEKERATNESLKRMKLDLESQQNSSTSNAS 158


>Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-1784295
           | 20130731
          Length = 255

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 80/189 (42%), Gaps = 35/189 (18%)

Query: 2   CDHDDWVNLAMADDSTVAGXXXXXXXXXXXXXX------WTVRQRRSTHKX--XXXXXXX 53
            D D+WV  AMADD+ VA                     W V++ RS  +          
Sbjct: 1   MDDDNWVETAMADDTIVANFLLSFTKKPSSPLYPPFTVHWNVQKPRSKLRRNHAVKFTRA 60

Query: 54  XXXXXLSWSGAATSVSCGANN----VDSHEEESSHLTKHAGASRSDKVANPSETVTTKKA 109
                LSWS A ++ +  AN      D +E  SS   K   +SRS KV   +E    KK 
Sbjct: 61  SPTTPLSWSAANSASTATANTAVTLADGNEASSSRFIKSVHSSRS-KVDEQTEATAYKKM 119

Query: 110 RRKK----------------------ELASLRITVDQQIATNESLKKMKLDLDLRQNSNT 147
            RKK                      +LAS+  TV+++ A NESLKK+KLDL  ++ +  
Sbjct: 120 IRKKRSLPELLEEEKMLLQERGNLKDKLASMNFTVERERAKNESLKKIKLDLVSQKATKE 179

Query: 148 TTTSEVSGK 156
             TS V+GK
Sbjct: 180 ARTSLVTGK 188