Miyakogusa Predicted Gene

Lj3g3v0012340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012340.1 CUFF.40186.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g040905.1 | transmembrane protein, putative | HC | chr1:15...   102   6e-23

>Medtr1g040905.1 | transmembrane protein, putative | HC |
          chr1:15188043-15190217 | 20130731
          Length = 77

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 56/76 (73%)

Query: 1  MSSLGTSKGILEIAKFGVYVTVPIVLMYTFANYTNNYLHKFIGKKSYVEYXXXXXXXXXX 60
          MSSLGTSKGILEIAKFGVYVTVPIVLMY +A+ T+N LHKFIGKKSY+EY          
Sbjct: 1  MSSLGTSKGILEIAKFGVYVTVPIVLMYVYASNTDNSLHKFIGKKSYIEYPKDTNTPPPP 60

Query: 61 XXXXXKARELAHKRNN 76
                ARELA KRNN
Sbjct: 61 EELREMARELARKRNN 76