Miyakogusa Predicted Gene

Lj3g3v0012290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012290.1 tr|D7LAA6|D7LAA6_ARALL ATMRP11 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_480238 PE=3
SV=1,59.7,0.000000000000009,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL,CUFF.40192.1
         (298 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g105190.2 | multidrug resistance-associated protein ABC do...   392   e-109
Medtr2g105190.1 | multidrug resistance-associated protein ABC do...   353   1e-97

>Medtr2g105190.2 | multidrug resistance-associated protein ABC
           domain protein | HC | chr2:45361303-45347132 | 20130731
          Length = 1331

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/293 (67%), Positives = 236/293 (80%), Gaps = 1/293 (0%)

Query: 6   ALICPNSPFVWDGKRFSECFEDIVLGLAVNIVTIVMIVLLGIYQKIA-RGVRRPEAQMAL 64
           ALICPNSP VWDGK FS+CF+DIVLG AVN+VTI MI++LGI QKI+ RG +R +AQM+L
Sbjct: 11  ALICPNSPSVWDGKGFSDCFQDIVLGFAVNVVTIAMILVLGIKQKISGRGTQRSDAQMSL 70

Query: 65  PEKVVLDFIPAVGACFSISNIIFLWKKEHDGHFVEYHKWFYSCSELVVWISIVLFTRCVS 124
            EK VL F+PA+GAC S+  I+FL KKEHDGHFV YH+W +SCSEL+VW +I+LFT+C S
Sbjct: 71  LEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFTKCAS 130

Query: 125 SHYIVLNCALCLWWILKPILGVFHLMTKFPSLEVSVLIIESILVLSNISFGIAINVMRIK 184
            H IV N  LC WWIL PILG+FHL+T FPSLEVS  I+ES++VL N+SFG+ INV+R+K
Sbjct: 131 IHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINVIRLK 190

Query: 185 RLSTKSSLLEEPLLSNGVDLEEGGNRDLGFNGDLWDLMTFKFITPVMNCGVVKQLDFEDL 244
           RLS+KSSLLE+PLLSNG DLEEGGN DL  N + WD MTFKFI+PVMN GV+KQLD +DL
Sbjct: 191 RLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLDSDDL 250

Query: 245 LPLPTDMGPSPCHEIILSCWRAQXXXXXXXXXXXRALCSAYGWPYLRLGLLKV 297
           LPL  DMGPS CH+IIL+ WRAQ            ALC+AYGWPYL LGLLKV
Sbjct: 251 LPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKV 303


>Medtr2g105190.1 | multidrug resistance-associated protein ABC
           domain protein | HC | chr2:45361236-45347509 | 20130731
          Length = 1479

 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/299 (63%), Positives = 227/299 (75%), Gaps = 7/299 (2%)

Query: 6   ALICPNSPFVWDG--KRFSECFEDIVL----GLAVNIVTIVMIVLLGIYQKIA-RGVRRP 58
           ALICPNSP V     K   E    +VL    G AVN+VTI MI++LGI QKI+ RG +R 
Sbjct: 11  ALICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRS 70

Query: 59  EAQMALPEKVVLDFIPAVGACFSISNIIFLWKKEHDGHFVEYHKWFYSCSELVVWISIVL 118
           +AQM+L EK VL F+PA+GAC S+  I+FL KKEHDGHFV YH+W +SCSEL+VW +I+L
Sbjct: 71  DAQMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIIL 130

Query: 119 FTRCVSSHYIVLNCALCLWWILKPILGVFHLMTKFPSLEVSVLIIESILVLSNISFGIAI 178
           FT+C S H IV N  LC WWIL PILG+FHL+T FPSLEVS  I+ES++VL N+SFG+ I
Sbjct: 131 FTKCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVI 190

Query: 179 NVMRIKRLSTKSSLLEEPLLSNGVDLEEGGNRDLGFNGDLWDLMTFKFITPVMNCGVVKQ 238
           NV+R+KRLS+KSSLLE+PLLSNG DLEEGGN DL  N + WD MTFKFI+PVMN GV+KQ
Sbjct: 191 NVIRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQ 250

Query: 239 LDFEDLLPLPTDMGPSPCHEIILSCWRAQXXXXXXXXXXXRALCSAYGWPYLRLGLLKV 297
           LD +DLLPL  DMGPS CH+IIL+ WRAQ            ALC+AYGWPYL LGLLKV
Sbjct: 251 LDSDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKV 309