Miyakogusa Predicted Gene

Lj3g3v0012280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012280.1 tr|Q9ZUX6|Q9ZUX6_ARATH Nucleolar matrix
protein-related OS=Arabidopsis thaliana GN=At2g27750 PE=2
SV,47.76,2e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; SURFEIT LOCUS
PROTEIN 6,Surfeit locus 6; SURF6,Surfeit locus 6,gene.g44795.t1.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g012820.3 | surfeit locus protein | HC | chr5:3932253-3931...   140   7e-34
Medtr5g012820.2 | surfeit locus protein | HC | chr5:3932253-3931...   140   7e-34
Medtr5g012820.1 | surfeit locus protein | HC | chr5:3932418-3931...   140   8e-34
Medtr2g079000.1 | surfeit locus protein | LC | chr2:33083036-330...   101   3e-22
Medtr2g079040.1 | surfeit locus protein | LC | chr2:33099686-330...    72   3e-13

>Medtr5g012820.3 | surfeit locus protein | HC | chr5:3932253-3931198
           | 20130731
          Length = 351

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 11/157 (7%)

Query: 19  KQREDRNVERGF--QGNKRKRGNATDD--------LAVKVKKDAADTSKELVFGNVILQD 68
           K+REDR+ +RG+  Q NKRKR +ATD+        L  KVKKDAA+ SK+LVFG+V LQD
Sbjct: 154 KKREDRDTKRGYHYQDNKRKRDDATDESKPAPDEKLQEKVKKDAAEASKQLVFGHVKLQD 213

Query: 69  EEIQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPK 128
           EE+ GKK+ K+S                       A A+K++W+AA++RASGIKVHDDPK
Sbjct: 214 EEMLGKKR-KISKHKELERAKKLEELKKNDPEKGEAIAKKEAWKAAMDRASGIKVHDDPK 272

Query: 129 LVQKSMKKEQKRREKNAEKWKERVQTRDQLKAGSSRK 165
           L++KS+ K +K++EKNAEKW+ERVQ+RDQLKA   +K
Sbjct: 273 LIKKSIHKVKKQQEKNAEKWEERVQSRDQLKAEKQKK 309


>Medtr5g012820.2 | surfeit locus protein | HC | chr5:3932253-3931198
           | 20130731
          Length = 351

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 11/157 (7%)

Query: 19  KQREDRNVERGF--QGNKRKRGNATDD--------LAVKVKKDAADTSKELVFGNVILQD 68
           K+REDR+ +RG+  Q NKRKR +ATD+        L  KVKKDAA+ SK+LVFG+V LQD
Sbjct: 154 KKREDRDTKRGYHYQDNKRKRDDATDESKPAPDEKLQEKVKKDAAEASKQLVFGHVKLQD 213

Query: 69  EEIQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPK 128
           EE+ GKK+ K+S                       A A+K++W+AA++RASGIKVHDDPK
Sbjct: 214 EEMLGKKR-KISKHKELERAKKLEELKKNDPEKGEAIAKKEAWKAAMDRASGIKVHDDPK 272

Query: 129 LVQKSMKKEQKRREKNAEKWKERVQTRDQLKAGSSRK 165
           L++KS+ K +K++EKNAEKW+ERVQ+RDQLKA   +K
Sbjct: 273 LIKKSIHKVKKQQEKNAEKWEERVQSRDQLKAEKQKK 309


>Medtr5g012820.1 | surfeit locus protein | HC | chr5:3932418-3931198
           | 20130731
          Length = 361

 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 11/157 (7%)

Query: 19  KQREDRNVERGF--QGNKRKRGNATDD--------LAVKVKKDAADTSKELVFGNVILQD 68
           K+REDR+ +RG+  Q NKRKR +ATD+        L  KVKKDAA+ SK+LVFG+V LQD
Sbjct: 164 KKREDRDTKRGYHYQDNKRKRDDATDESKPAPDEKLQEKVKKDAAEASKQLVFGHVKLQD 223

Query: 69  EEIQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPK 128
           EE+ GKK+ K+S                       A A+K++W+AA++RASGIKVHDDPK
Sbjct: 224 EEMLGKKR-KISKHKELERAKKLEELKKNDPEKGEAIAKKEAWKAAMDRASGIKVHDDPK 282

Query: 129 LVQKSMKKEQKRREKNAEKWKERVQTRDQLKAGSSRK 165
           L++KS+ K +K++EKNAEKW+ERVQ+RDQLKA   +K
Sbjct: 283 LIKKSIHKVKKQQEKNAEKWEERVQSRDQLKAEKQKK 319


>Medtr2g079000.1 | surfeit locus protein | LC |
           chr2:33083036-33082114 | 20130731
          Length = 225

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 2/114 (1%)

Query: 47  KVKKDAADTSKELVFGNVILQDEEIQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFA 106
           KV K+A +  KELVFGNV LQ  E+ GK+K  V                        A A
Sbjct: 103 KVIKEATEALKELVFGNVKLQKGEMHGKRK--VFKNKELERAKKLEEVKKNDPEKGEAIA 160

Query: 107 RKQSWEAALNRASGIKVHDDPKLVQKSMKKEQKRREKNAEKWKERVQTRDQLKA 160
           +K++W+AA+ RASGIKVHDDPKL+++S++K +KR++KNA KW+ERVQTRDQLK+
Sbjct: 161 KKEAWKAAMKRASGIKVHDDPKLIKRSIQKRKKRQQKNAVKWEERVQTRDQLKS 214


>Medtr2g079040.1 | surfeit locus protein | LC |
           chr2:33099686-33098519 | 20130731
          Length = 149

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 43/46 (93%)

Query: 115 LNRASGIKVHDDPKLVQKSMKKEQKRREKNAEKWKERVQTRDQLKA 160
           + RASGIKVHDDPKL+++S++K +KR++KNA KW+ERVQTRDQLK+
Sbjct: 1   MKRASGIKVHDDPKLIKRSIQKRKKRQQKNAVKWEERVQTRDQLKS 46