Miyakogusa Predicted Gene

Lj2g3v3339640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339640.1 tr|A9T5C3|A9T5C3_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,57.14,2e-16, ,CUFF.40108.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g098530.1 | transmembrane protein, putative | HC | chr5:43...   127   2e-30

>Medtr5g098530.1 | transmembrane protein, putative | HC |
           chr5:43143661-43142967 | 20130731
          Length = 118

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 76/80 (95%)

Query: 40  VGVRVHAKIGGSDEDTKKGEKKKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMS 99
           +GV+V A++GG DE+TKKGEKKKFITR++EP+QYWQ+AGEREGENPM TPLPYII+FGMS
Sbjct: 39  LGVKVCAQLGGRDEETKKGEKKKFITREQEPEQYWQSAGEREGENPMMTPLPYIILFGMS 98

Query: 100 TPFVILAIAFANGWIKVPVR 119
           TPFVIL IAFANGWIKVP+R
Sbjct: 99  TPFVILGIAFANGWIKVPIR 118