Miyakogusa Predicted Gene

Lj2g3v3339580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339580.1 tr|B9IAT9|B9IAT9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775162 PE=4
SV=1,36.64,1e-18,seg,NULL,CUFF.40103.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g098480.1 | transmembrane protein, putative | HC | chr5:43...    78   9e-15

>Medtr5g098480.1 | transmembrane protein, putative | HC |
           chr5:43114257-43113595 | 20130731
          Length = 205

 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 92/205 (44%), Gaps = 46/205 (22%)

Query: 29  IGFGFFSVICTAIVVIFLSTSVLLYSVSKHRALQHVHKLVEEKVLISSQGSDKRENKIAP 88
           +G+GF S++ T++                 R + +V KLVEEK L S       EN+   
Sbjct: 46  VGYGFLSLLYTSM----------------QRKV-NVDKLVEEKFLNSDDEKSNEENEAQ- 87

Query: 89  TTPLELEVVNVDGVPSNYSTTTSAPDLLSESKCQ-DQLWSSENSEVDYHCLDFXXXXXXX 147
                 E VN+DG               SES+ Q D L +SE SEVD H  D+       
Sbjct: 88  ------EEVNIDG---------------SESESQEDHLSTSEGSEVD-HSHDYSDGSISD 125

Query: 148 XXXXXXXXXPGGHYVDHDHQKDHESKNNYCSLQQKKKELSAEALFNQQCLMXXXXXXXXX 207
                    P G+YV+   QKD   +++Y SLQQKKKEL  +ALF+QQ LM         
Sbjct: 126 EESLIEIALPSGNYVNM--QKD---ESDYYSLQQKKKELFGDALFSQQSLMELLSELNEV 180

Query: 208 XXXXXXXXXXXXMGSIKYSRFGIKA 232
                       MGSIKYSRF I+A
Sbjct: 181 NEEENFIEIDLSMGSIKYSRFEIEA 205