Miyakogusa Predicted Gene

Lj2g3v3339040.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339040.1 tr|I0Z3N6|I0Z3N6_9CHLO Translational machinery
component OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,46.39,0.0000000000001,no description,NULL; seg,NULL;
Translational machinery components,NULL; Ribosomal_L18p,Ribosomal
pro,CUFF.40077.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114200.1 | 50S ribosomal L18-like protein | HC | chr1:515...   161   1e-40
Medtr3g012540.1 | structural constituent of ribosome protein | H...    62   1e-10
Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC ...    55   1e-08
Medtr7g083650.1 | 50S ribosomal L18-like protein | HC | chr7:322...    46   8e-06

>Medtr1g114200.1 | 50S ribosomal L18-like protein | HC |
           chr1:51533429-51531111 | 20130731
          Length = 114

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 86/101 (85%)

Query: 14  NFLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKIL 73
            +LKPYVL+MHFTNKYVSAQVIH            QEKALRSSLET RDVAAAAKIGK+L
Sbjct: 14  QYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLL 73

Query: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGVKLL 114
           AERL LK+IPAVSVHLKREQ+YHGKVKAV+DSLREAGV+LL
Sbjct: 74  AERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114


>Medtr3g012540.1 | structural constituent of ribosome protein | HC |
           chr3:3539643-3535836 | 20130731
          Length = 187

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L +R D+ A   IG+ILA
Sbjct: 84  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 143

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGVKL 113
           ER +  ++   S   +   K+ GK++AVV SL + G+ L
Sbjct: 144 ERAMEADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDL 182


>Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC |
           chr4:11256027-11260142 | 20130731
          Length = 199

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 56/97 (57%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKILA 74
           +++P++L + F+ K+V A+V H              K LR+SL +  D  A   IG+++A
Sbjct: 100 YMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLRNSLPSLIDPEACRVIGRLIA 159

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGV 111
           ER    ++ A++   +++++  G++  ++D+++E G+
Sbjct: 160 ERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196


>Medtr7g083650.1 | 50S ribosomal L18-like protein | HC |
           chr7:32201784-32203998 | 20130731
          Length = 124

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRR--DVAAAAKIGKI 72
             K YVLR+  + KY++A V+              E  ++ SLE  R  +  AAA +G++
Sbjct: 3   LTKRYVLRLFISIKYITANVVDRNSGRIVATSSTAEHDIKQSLECGRSCNAKAAAVVGEV 62

Query: 73  LAERL---LLKEIPAVSVHL-------KREQKYHGKVKAVVDSLREAGVKLL 114
           LA RL    L E     +H+       K+  K   K+ AVV++L+  GVKL+
Sbjct: 63  LARRLKVEGLNEGEGRGIHVNVNKEIEKKGFKSQTKILAVVNALKYNGVKLV 114