Miyakogusa Predicted Gene
- Lj2g3v3339010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3339010.2 Non Characterized Hit- tr|I1JJR4|I1JJR4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20815
PE,91.44,0,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RNA
recogni,CUFF.40071.2
(478 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 691 0.0
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 691 0.0
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 453 e-127
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 453 e-127
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 427 e-119
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 427 e-119
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 427 e-119
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 311 1e-84
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 4e-66
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 4e-66
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 193 3e-49
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 167 2e-41
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 155 8e-38
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 5e-31
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 5e-31
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 5e-31
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 5e-31
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 100 6e-21
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 2e-19
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 82 1e-15
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 79 9e-15
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-14
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 6e-14
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 6e-14
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 8e-14
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 9e-14
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 9e-14
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-13
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 74 2e-13
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 4e-13
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 4e-13
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 73 6e-13
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 7e-13
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 7e-13
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 72 9e-13
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 5e-12
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 5e-12
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 5e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 69 8e-12
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 69 8e-12
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 69 1e-11
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 69 1e-11
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 69 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 3e-11
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 67 3e-11
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 67 4e-11
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 6e-11
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 67 6e-11
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 66 7e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 8e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 9e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 66 9e-11
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 65 1e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 65 1e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 65 1e-10
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 65 2e-10
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 4e-10
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 4e-10
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 4e-10
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 5e-10
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 63 5e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 63 6e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 62 1e-09
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 62 1e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-09
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-09
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-09
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-09
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-09
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 61 2e-09
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 61 2e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 59 8e-09
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 9e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 9e-09
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 59 1e-08
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 59 1e-08
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 1e-08
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 59 1e-08
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 57 3e-08
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 57 3e-08
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 57 4e-08
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 57 5e-08
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 56 6e-08
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 56 7e-08
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 8e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 56 9e-08
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 56 9e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 56 1e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 1e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 56 1e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 56 1e-07
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 55 2e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 55 2e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 5e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 53 8e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3... 52 1e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 52 1e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 52 2e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 50 4e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 4e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 50 4e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 50 4e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 50 5e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 50 5e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-06
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/477 (74%), Positives = 376/477 (78%), Gaps = 1/477 (0%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
MQSD+GKLFIGGISWDT EERLREYFS YGEV EAVIMKDRTTGRARGFGFVVF DPAVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
DIV++EKHNIDGRMVEAKKAVPRDDQ VLSR SGSIHGSPGPGRTRKIFVGGLASTVTES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLLKTFHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
AVPKELSPGP+RSPL GY+YGL+RVNSFLNGF Q Y+P+TVGGYGLR+DGRFSPVAGGR+
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
+AP GSGYGM +NFEPGL+ N+SYGRGLNPYF+G SNR+GSPVGYE
Sbjct: 241 AYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGN 300
Query: 301 XXXXXXXXXVTRNLWGNGGLNYGTSSANSNAYIXXXXXXXXXXXXXXXXXXXXSSPIXXX 360
VTRNLWGNG LNYGTSSANSNAYI SSPI
Sbjct: 301 GGSNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGH 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSSYSASN-GGVDGAFSDFYN 419
APTSSYS SN GGVDGAF+DFYN
Sbjct: 361 GGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYN 420
Query: 420 NNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGI 476
NNSVYGD TWRSSNSERDGSGPFGYGLGGA SDVSAK+SPGYVGGYTVNKRQPNRGI
Sbjct: 421 NNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGI 477
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/476 (74%), Positives = 375/476 (78%), Gaps = 1/476 (0%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
MQSD+GKLFIGGISWDT EERLREYFS YGEV EAVIMKDRTTGRARGFGFVVF DPAVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
DIV++EKHNIDGRMVEAKKAVPRDDQ VLSR SGSIHGSPGPGRTRKIFVGGLASTVTES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLLKTFHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
AVPKELSPGP+RSPL GY+YGL+RVNSFLNGF Q Y+P+TVGGYGLR+DGRFSPVAGGR+
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
+AP GSGYGM +NFEPGL+ N+SYGRGLNPYF+G SNR+GSPVGYE
Sbjct: 241 AYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGN 300
Query: 301 XXXXXXXXXVTRNLWGNGGLNYGTSSANSNAYIXXXXXXXXXXXXXXXXXXXXSSPIXXX 360
VTRNLWGNG LNYGTSSANSNAYI SSPI
Sbjct: 301 GGSNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGH 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSSYSASN-GGVDGAFSDFYN 419
APTSSYS SN GGVDGAF+DFYN
Sbjct: 361 GGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYN 420
Query: 420 NNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRG 475
NNSVYGD TWRSSNSERDGSGPFGYGLGGA SDVSAK+SPGYVGGYTVNKRQPNRG
Sbjct: 421 NNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRG 476
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 453 bits (1166), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/336 (66%), Positives = 269/336 (80%), Gaps = 3/336 (0%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERL+EYF+ YGEV+EAVIM+DR TGRARGFGFVVFSDPAVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ VI +KH IDGR VEAKKAVPRDDQ ++R +GS+ GSPGPGRT+KIFVGGL ST+TES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
DFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELNGKMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPGPSRSPLGGY-SYGLN-RVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGG 238
AVPKELSPGP+RSPL GY +Y LN R +S+LN + QGY+ + +GG+G+RMDGRFSP+ GG
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 239 RSGFAPLG-SGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYE 297
R+GF P G +GYGM +N E GL+ +N+ YGR +P++ G+S+RY +P+GY
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 298 XXXXXXXXXXXXVTRNLWGNGGLNYGTSSANSNAYI 333
+RN+WGNGGL+ + + A++
Sbjct: 301 GGNGRGDSLMNSTSRNVWGNGGLSNANNPVSPGAFL 336
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 399 PTSSYSASNGGVDGAFSDFYNNNS--VYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK 456
P+S+++AS GG DG++ D Y + S VY D WRS+ SE DGSG F YGLGG ASD K
Sbjct: 400 PSSTFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVK 459
Query: 457 SSPGYVGGYTVNKRQPNRG 475
+S GY+G Y V RQPNRG
Sbjct: 460 TSEGYIGSYNVASRQPNRG 478
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 453 bits (1166), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/336 (66%), Positives = 269/336 (80%), Gaps = 3/336 (0%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERL+EYF+ YGEV+EAVIM+DR TGRARGFGFVVFSDPAVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ VI +KH IDGR VEAKKAVPRDDQ ++R +GS+ GSPGPGRT+KIFVGGL ST+TES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
DFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELNGKMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 181 AVPKELSPGPSRSPLGGY-SYGLN-RVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGG 238
AVPKELSPGP+RSPL GY +Y LN R +S+LN + QGY+ + +GG+G+RMDGRFSP+ GG
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 239 RSGFAPLG-SGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYE 297
R+GF P G +GYGM +N E GL+ +N+ YGR +P++ G+S+RY +P+GY
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 298 XXXXXXXXXXXXVTRNLWGNGGLNYGTSSANSNAYI 333
+RN+WGNGGL+ + + A++
Sbjct: 301 GGNGRGDSLMNSTSRNVWGNGGLSNANNPVSPGAFL 336
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 399 PTSSYSASNGGVDGAFSDFYNNNS--VYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK 456
P+S+++AS GG DG++ D Y + S VY D WRS+ SE DGSG F YGLGG ASD K
Sbjct: 400 PSSTFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVK 459
Query: 457 SSPGYVGGYTVNKRQPNRGIAA 478
+S GY+G Y V RQPNRGIAA
Sbjct: 460 TSEGYIGSYNVASRQPNRGIAA 481
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 253/334 (75%), Gaps = 6/334 (1%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D GKLFIGGISWDT E+RLR+YF +G+VVEAVIMKDRTTGRARGFGFVVF+DP+VA+ V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG--RTRKIFVGGLASTVTESD 121
+ EKH IDGR VEAKKAVPRDDQ V +R++ S HGSP P RT+KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPGPSRSPLGGYSYG-LNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
VPK+LSP PSR LGG+SYG ++RV SF NGF QGY P+ +GG+GLR+DGR SP GRS
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
G++ YG LNFEP L SN GR L+ + S +RY + + Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 301 XXXXXXXXXVT-RNLWGNGGLNYGTSSANSNAYI 333
T ++LWGNG LNY + A+S+A++
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFL 333
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK-SSP 459
SSY+ SNG A+ + Y D TWR + SE + SGP +GL A SD+ K SS
Sbjct: 402 SSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSS 461
Query: 460 GYVGGY-TVNKRQPNRGIAA 478
G++G Y V RQ NRGIAA
Sbjct: 462 GHIGAYAAVANRQSNRGIAA 481
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 253/334 (75%), Gaps = 6/334 (1%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D GKLFIGGISWDT E+RLR+YF +G+VVEAVIMKDRTTGRARGFGFVVF+DP+VA+ V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG--RTRKIFVGGLASTVTESD 121
+ EKH IDGR VEAKKAVPRDDQ V +R++ S HGSP P RT+KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPGPSRSPLGGYSYG-LNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
VPK+LSP PSR LGG+SYG ++RV SF NGF QGY P+ +GG+GLR+DGR SP GRS
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
G++ YG LNFEP L SN GR L+ + S +RY + + Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 301 XXXXXXXXXVT-RNLWGNGGLNYGTSSANSNAYI 333
T ++LWGNG LNY + A+S+A++
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFL 333
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK-SSP 459
SSY+ SNG A+ + Y D TWR + SE + SGP +GL A SD+ K SS
Sbjct: 402 SSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSS 461
Query: 460 GYVGGY-TVNKRQPNRGIAA 478
G++G Y V RQ NRGIAA
Sbjct: 462 GHIGAYAAVANRQSNRGIAA 481
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 253/334 (75%), Gaps = 6/334 (1%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D GKLFIGGISWDT E+RLR+YF +G+VVEAVIMKDRTTGRARGFGFVVF+DP+VA+ V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG--RTRKIFVGGLASTVTESD 121
+ EKH IDGR VEAKKAVPRDDQ V +R++ S HGSP P RT+KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPGPSRSPLGGYSYG-LNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
VPK+LSP PSR LGG+SYG ++RV SF NGF QGY P+ +GG+GLR+DGR SP GRS
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
G++ YG LNFEP L SN GR L+ + S +RY + + Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 301 XXXXXXXXXVT-RNLWGNGGLNYGTSSANSNAYI 333
T ++LWGNG LNY + A+S+A++
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFL 333
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK-SSP 459
SSY+ SNG A+ + Y D TWR + SE + SGP +GL A SD+ K SS
Sbjct: 402 SSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSS 461
Query: 460 GYVGGY-TVNKRQPNRGIAA 478
G++G Y V RQ NRGIAA
Sbjct: 462 GHIGAYAAVANRQSNRGIAA 481
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 311 bits (796), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/264 (61%), Positives = 190/264 (71%), Gaps = 6/264 (2%)
Query: 74 MVEAKKAVPRDDQTVLSRNSGSIHGSPGPG--RTRKIFVGGLASTVTESDFKKYFDQFGT 131
VEAKKAVPRDDQ V +R++ S HGSP P RT+KIFVGGLASTVTESDFK YFDQFGT
Sbjct: 2 QVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGT 61
Query: 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
ITDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELNGKMVEVKRAVPK+LSP PS
Sbjct: 62 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPS 121
Query: 192 RSPLGGYSYG-LNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRSGFAPLGSGYG 250
R LGG+SYG ++RV SF NGF QGY P+ +GG+GLR+DGR SP GRSG++ YG
Sbjct: 122 RGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLFSPSYG 181
Query: 251 MNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXXXXXXXXXXXV 310
LNFEP L SN GR L+ + S +RY + + Y
Sbjct: 182 TGLNFEPPLN--QNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAISS 239
Query: 311 T-RNLWGNGGLNYGTSSANSNAYI 333
T ++LWGNG LNY + A+S+A++
Sbjct: 240 TNQSLWGNGNLNYANNPASSDAFL 263
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF-SDPAVADIVIK 65
K+F+GG++ TE + YF +G + + V+M D T R RGFGF+ + S+ AV ++ K
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H ++G+MVE K+AVP+D
Sbjct: 97 TFHELNGKMVEVKRAVPKD 115
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAK-SSP 459
SSY+ SNG A+ + Y D TWR + SE + SGP +GL A SD+ K SS
Sbjct: 332 SSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSS 391
Query: 460 GYVGGY-TVNKRQPNRGIAA 478
G++G Y V RQ NRGIAA
Sbjct: 392 GHIGAYAAVANRQSNRGIAA 411
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 150/195 (76%), Gaps = 6/195 (3%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M SD GKLFIGGISWDT EE+L+E+FS YG+V+ +M+++ TG+ RGFGFVVFSDP+V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH------GSPGPGRTRKIFVGGLA 114
D V+++KH IDGR V+AK+A R+DQ + + G+ G RT+KIFVGGL
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
T+ E F++YF+ +G +TDVVVMYD NT RPRGFGFIT+D+EEAVD+VL KTFH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 175 MVEVKRAVPKELSPG 189
VEVKRA+PK+ +PG
Sbjct: 181 QVEVKRALPKDANPG 195
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 150/195 (76%), Gaps = 6/195 (3%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M SD GKLFIGGISWDT EE+L+E+FS YG+V+ +M+++ TG+ RGFGFVVFSDP+V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH------GSPGPGRTRKIFVGGLA 114
D V+++KH IDGR V+AK+A R+DQ + + G+ G RT+KIFVGGL
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
T+ E F++YF+ +G +TDVVVMYD NT RPRGFGFIT+D+EEAVD+VL KTFH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 175 MVEVKRAVPKELSPG 189
VEVKRA+PK+ +PG
Sbjct: 181 QVEVKRALPKDANPG 195
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 134/192 (69%), Gaps = 7/192 (3%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M SD KLF+GGIS +TTE+ L+ +F+ YG+V+ + I DRTT RGFGFV FSD + A
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLS----RNSGSIHGSPGPG---RTRKIFVGGL 113
+++ H I GR VE +KA+PR +Q + R S G RT+KIFVGGL
Sbjct: 65 HNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ ++ +FK+YF++FG ITDVVVM D T RPRGFGFIT+DSE++V V++++FH+LNG
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
Query: 174 KMVEVKRAVPKE 185
+ VEVKRAVP+E
Sbjct: 185 RQVEVKRAVPRE 196
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 127/188 (67%), Gaps = 14/188 (7%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GK+FIGG++ +TT + ++F YGE+ ++VIMKDR TG+ RGFGF+ ++DP+V D VI+
Sbjct: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE 104
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H I+ + VE K+ +PR V S++ RT+KIFVGG+ S VTE +F+ +
Sbjct: 105 DSHIINSKQVEIKRTIPRG--AVGSKDF----------RTKKIFVGGIPSNVTEDEFRDF 152
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-LKTFHELNGKMVEVKRAVPK 184
F ++G + D +M DH+T R RGFGF+T+D+EEAVD +L + E G VE+K+A PK
Sbjct: 153 FTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPK 212
Query: 185 EL-SPGPS 191
+ +P PS
Sbjct: 213 KANAPPPS 220
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 118/182 (64%), Gaps = 15/182 (8%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GK+FIGG++ DTT E +YF YGE+ ++VIMKDR TGR RGFGF+ ++D +V D VI+
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ 77
Query: 66 EKHNIDGRMVEAKKAVPR-DDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
E H I+ + VE K+ +P+ QT +T+KIFVGG+ +TV+E + K
Sbjct: 78 ENHIINDKQVEIKRTIPKGASQT-------------NDFKTKKIFVGGIPATVSEDELKI 124
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVP 183
+F + G + + ++ DH T+R RGFGF+ +DS++AVD +L +++ VE+K+A P
Sbjct: 125 FFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEP 184
Query: 184 KE 185
K+
Sbjct: 185 KK 186
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+ KL + GI WD E L+EY S YGE+ + ++MK+R+TGR+RGFG+V F+ A V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
+ +H + RM+E K A P+++ ++ + +IFV + +VTE F+
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------KVTRIFVARIPPSVTEETFR 109
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL G V V RA P
Sbjct: 110 SHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATP 168
Query: 184 KE--LSPGPSRSPLGGY 198
KE + P S GGY
Sbjct: 169 KEDDVKPTGRMSQGGGY 185
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I TEE R +F YG++ + + KD+ + RG GF+ F + + ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHNIDGRMVEAKKAVPRDDQT-------------------------------VLSRNSGS 95
H + G V +A P++D L + G
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 96 IHGSPGPGR--TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
I+G P R ++KIFVG L D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+ E D+V L+ HE+ G V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+G + + E LR+YF +G + + I +D RGFGFV F+D VAD V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGL 113
H I G V A P DD +++ + S G GP R+ GGL
Sbjct: 286 PHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGL 337
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+ KL + GI WD E L+EY S YGE+ + ++MK+R+TGR+RGFG+V F+ A V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
+ +H + RM+E K A P+++ ++ + +IFV + +VTE F+
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------KVTRIFVARIPPSVTEETFR 109
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL G V V RA P
Sbjct: 110 SHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATP 168
Query: 184 KE--LSPGPSRSPLGGY 198
KE + P S GGY
Sbjct: 169 KEDDVKPTGRMSQGGGY 185
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I TEE R +F YG++ + + KD+ + RG GF+ F + + ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHNIDGRMVEAKKAVPRDDQT-------------------------------VLSRNSGS 95
H + G V +A P++D L + G
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 96 IHGSPGPGR--TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
I+G P R ++KIFVG L D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+ E D+V L+ HE+ G V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+G + + E LR+YF +G + + I +D RGFGFV F+D VAD V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGL 113
H I G V A P DD +++ + S G GP R+ GGL
Sbjct: 286 PHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGL 337
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+ KL + GI WD E L+EY S YGE+ + ++MK+R+TGR+RGFG+V F+ A V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
+ +H + RM+E K A P+++ ++ + +IFV + +VTE F+
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------KVTRIFVARIPPSVTEETFR 109
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL G V V RA P
Sbjct: 110 SHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATP 168
Query: 184 KE--LSPGPSRSPLGGY 198
KE + P S GGY
Sbjct: 169 KEDDVKPTGRMSQGGGY 185
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I TEE R +F YG++ + + KD+ + RG GF+ F + + ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHNIDGRMVEAKKAVPRDDQT-------------------------------VLSRNSGS 95
H + G V +A P++D L + G
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 96 IHGSPGPGR--TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
I+G P R ++KIFVG L D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+ E D+V L+ HE+ G V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+G + + E LR+YF +G + + I +D RGFGFV F+D VAD V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGL 113
H I G V A P DD +++ + S G GP R+ GGL
Sbjct: 286 PHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGL 337
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+ KL + GI WD E L+EY S YGE+ + ++MK+R+TGR+RGFG+V F+ A V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
+ +H + RM+E K A P+++ ++ + +IFV + +VTE F+
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------KVTRIFVARIPPSVTEETFR 109
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+++G ITD+ + D ++ RG GFIT+ + E+V+ ++ +T HEL G V V RA P
Sbjct: 110 SHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATP 168
Query: 184 KE--LSPGPSRSPLGGY 198
KE + P S GGY
Sbjct: 169 KEDDVKPTGRMSQGGGY 185
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I TEE R +F YG++ + + KD+ + RG GF+ F + + ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHNIDGRMVEAKKAVPRDDQT-------------------------------VLSRNSGS 95
H + G V +A P++D L + G
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 96 IHGSPGPGR--TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
I+G P R ++KIFVG L D ++YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+ E D+V L+ HE+ G V + A P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+G + + E LR+YF +G + + I +D RGFGFV F+D VAD V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGL 113
H I G V A P DD +++ + S G GP R+ GGL
Sbjct: 286 PHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGL 337
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+ G+S +TT E LR FS+YG++ EA+++ D+ TGR++G+GFVV+ A + +KE
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
IDGRM + A +GS G +RK+FVG + V+
Sbjct: 137 PSKKIDGRMTVTQLAA-----------AGSTGGD---VSSRKVFVGNVPFEVSAESLLSE 182
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV--- 182
F ++G I + + +D + + RGF F Y +EE + ++ ++G V K AV
Sbjct: 183 FSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNK 242
Query: 183 -PKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGG 238
PK + PS P+ + + N + G PN+ Y + G P AGG
Sbjct: 243 KPKPVGQNPSGFPVDNSNVNYHPPNPTMMPPQYGAPPNS---YVQQPYGNQVPAAGG 296
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G+ WDTT E LR FS YGE+ EA+++ D+ TG+++G+GFV F A + ++E
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
IDGR+ Q + NSGS + + RKI+V + + +
Sbjct: 134 PSKRIDGRVTVT--------QLAAAGNSGSNTNAADVAQ-RKIYVSNVPPDLPGDKLLAH 184
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
F +G I + + +D T R +GF Y + E + + + + G+ + K A+
Sbjct: 185 FSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAI 241
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDTT L FS YGE+ + + D+ +G+++G+GF++F + A +KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHNIDGRMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRT-RKIFVGGLASTVTESDFK 123
+ I RM + A + QT + + + G T RKI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDTT L FS YGE+ + + D+ +G+++G+GF++F + A +KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHNIDGRMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRT-RKIFVGGLASTVTESDFK 123
+ I RM + A + QT + + + G T RKI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDTT L FS YGE+ + + D+ +G+++G+GF++F + A +KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHNIDGRMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRT-RKIFVGGLASTVTESDFK 123
+ I RM + A + QT + + + G T RKI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDTT L FS YGE+ + + D+ +G+++G+GF++F + A +KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHNIDGRMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRT-RKIFVGGLASTVTESDFK 123
+ I RM + A + QT + + + G T RKI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S++ K+F+G + +D E+L + F G V A ++ +R T R+RGFGFV S +
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 63 VIKE--KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR------KIFVGGLA 114
+ + +DGR++ KA PR G+P + R + +VG L
Sbjct: 179 AVNKFSGFELDGRLLTVNKAAPR--------------GTPRLRQPRTFNSGLRAYVGNLP 224
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDKVLLKTFHELNG 173
V S ++ F + G + V+YD T R RGFGF+T +E E D + NG
Sbjct: 225 WDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNG 284
Query: 174 KMVEVKRA 181
+ + V A
Sbjct: 285 RAIRVNVA 292
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P KIFVG L V + F+Q GT+ V+Y+ +T R RGFGF+T + E V+
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 162 KVLLK-TFHELNGKMVEVKRAVPK 184
+ + K + EL+G+++ V +A P+
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPR 201
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD--IVI 64
+ ++G + WD L + FS +G+V A ++ DR TGR+RGFGFV S+ A + I
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 65 KEKHNIDGRMVEAKKAVPR 83
+ + +GR + A R
Sbjct: 277 LDGQSFNGRAIRVNVAEER 295
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDTT L FS YGE+ + + D+ +G+++G+GF++F + A +KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHNIDGRMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRT-RKIFVGGLASTVTESDFK 123
+ I RM + A + QT + + + G T RKI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF Y S E+ + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WD T E L FS YGE+ + + D+ +G+++G+ F++F
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILF------------ 213
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR-------------TRKIFVGGL 113
KH R +A+ + + + +R + S GP RKIFV +
Sbjct: 214 KHRTGCR-----RALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+S + ++F QFG + D + D T +P+GF Y + E+ K L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 174 KMVEVKRAV 182
+ ++AV
Sbjct: 329 HTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WD T E L FS YGE+ + + D+ +G+++G+ F++F
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILF------------ 213
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR-------------TRKIFVGGL 113
KH R +A+ + + + +R + S GP RKIFV +
Sbjct: 214 KHRTGCR-----RALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+S + ++F QFG + D + D T +P+GF Y + E+ K L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 174 KMVEVKRAV 182
+ ++AV
Sbjct: 329 HTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WD T E L FS YGE+ + + D+ +G+++G+ F++F
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILF------------ 213
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR-------------TRKIFVGGL 113
KH R +A+ + + + +R + S GP RKIFV +
Sbjct: 214 KHRTGCR-----RALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+S + ++F QFG + D + D T +P+GF Y + E+ K L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 174 KMVEVKRAV 182
+ ++AV
Sbjct: 329 HTLYCQKAV 337
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 50/214 (23%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
KLF+G + TEE +R F +G VVE ++KDR TG+ +G F+ ++ AD I+
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR--------------KIFVG 111
HN + +P G GP + R K+FVG
Sbjct: 148 ALHN--------RHTLP---------------GGVGPIQVRYADGERERLGAVEYKLFVG 184
Query: 112 GLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHEL 171
L + + ++ F ++G I DV +M D Q RG GF+ Y + + L + L
Sbjct: 185 SLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQS-RGCGFVKYSHRD----MALAAINAL 239
Query: 172 NG--------KMVEVKRAVPKELSPGPSRSPLGG 197
NG + + V+ A PK G SR P G
Sbjct: 240 NGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFG 273
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + L+ YF +G+++EAV++ DRTTG+++G+GFV F DP A + +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-NIDGRMVEAKKAVPRDDQTVLSR---NSGSIHGSP 100
+ IDGR A + D ++ + NS S + SP
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQKFNSPSRNTSP 124
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 83 RDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN 142
R ++ +S N H G KIFVGGLA K+YFDQFG I + VV+ D
Sbjct: 5 RQNKITMSLNVVPKHV--GDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRT 62
Query: 143 TQRPRGFGFITY-DSEEAV 160
T + +G+GF+T+ D A+
Sbjct: 63 TGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + L+ YF +G+++EAV++ DRTTG+++G+GFV F DP A + +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-NIDGRMVEAKKAVPRDDQTVLSR---NSGSIHGSP 100
+ IDGR A + D ++ + NS S + SP
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQKFNSPSRNTSP 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 160
KIFVGGLA K+YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG++W+T E +R YF +GE++EAV++ D+ TGR++G+GFV F DP A I+
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAA---IRA 82
Query: 67 KHN----IDGRMVEAKKA 80
N IDGR A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGLA + YF+QFG I + VV+ D T R +G+GF+T+ EA +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG++W+T E +R YF +GE++EAV++ D+ TGR++G+GFV F DP A I+
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAA---IRA 82
Query: 67 KHN----IDGRMVEAKKA 80
N IDGR A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGLA + YF+QFG I + VV+ D T R +G+GF+T+ EA +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + L+ YF +G+++EAV++ DRTTG+++G+GFV F DP A + +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-NIDGRMVEAKKAVPRDDQTVLSR---NSGSIHGSP 100
+ IDGR A + D ++ + NS S + SP
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQKFNSPSRNTSP 124
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
KIFVGGLA K+YFDQFG I + VV+ D T + +G+GF+T+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + L+ YF +G+++EAV++ DRTTG+++G+GFV F DP A + +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-NIDGRMVEAKKAVPRDDQTVLSR---NSGSIHGSP 100
+ IDGR A + D ++ + NS S + SP
Sbjct: 87 PNPMIDGRRANCNLAYQKPDPSLTGKQKFNSPSRNTSP 124
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
KIFVGGLA K+YFDQFG I + VV+ D T + +G+GF+T+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF--SDPAVADIVI 64
KLFIGG+S+ T E LRE FS YG+V++A I+ DR TGR+RGFGF+ F S+ A + +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 65 KEKHNIDGRMVEAKKAVPR 83
+ +DGR V A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLL 165
K+F+GG++ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 166 KTFHELNGKMVEVKRAVPK 184
EL+G+ V V A +
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF--SDPAVADIVI 64
KLFIGG+S+ T E LRE FS YG+V++A I+ DR TGR+RGFGF+ F S+ A + +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 65 KEKHNIDGRMVEAKKAVPR 83
+ +DGR V A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLL 165
K+F+GG++ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 166 KTFHELNGKMVEVKRAVPK 184
EL+G+ V V A +
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 KHN-IDGRMVEAKKA 80
IDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGL 226
++G+ A S G R P SYG R S G Q VGGYG
Sbjct: 90 PSPVIDGRRANCNLA-----SHGRPRGPP--ISYGRVRPASPYVGSLQPARGAYVGGYGY 142
Query: 227 RM 228
+
Sbjct: 143 QQ 144
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVADIVIK 65
K+F+GG++W+T +E +++YF +GE++EAV++ D+ TGR++G+GFV F +P A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + KKYF+QFG I + VV+ D T R +G+GF+T+ +A + +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGF 212
++G+ A PS GG + + SF GF
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGF 122
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVADIVIK 65
K+F+GG++W+T +E +++YF +GE++EAV++ D+ TGR++G+GFV F +P A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + KKYF+QFG I + VV+ D T R +G+GF+T+ +A + +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGF 212
++G+ A PS GG + + SF GF
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGF 122
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 KHN-IDGRMVEAKKA 80
IDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGL 226
++G+ A S G R P SYG R S G Q VGGYG
Sbjct: 90 PSPVIDGRRANCNLA-----SHGRPRGP--PISYGRVRPASPYVGSLQPARGAYVGGYGY 142
Query: 227 RMDGRFSPVAGGRSGFAPLGSGYGMNLNFEP 257
+ PL GY + + P
Sbjct: 143 QQ---------------PLSYGYQQGMVYPP 158
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
++ KLF+G +D E+L F G V A ++ +R T +RGFGFV S A+
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 IKEKHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
+++ + D GR + KA P+ SR + +I+V LA V S
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKG-----SRPERTERAPRTFEPVLRIYVANLAWEVDNSR 221
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLLKTFHELNGKMVEVKR 180
++ F + G I V+YD T R RGFGF+T D E D + L G+ + V
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSV 281
Query: 181 A 181
A
Sbjct: 282 A 282
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD--IVI 64
++++ ++W+ RL + FS +G++V A ++ DR TGR+RGFGFV SD + I
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 65 KEKHNIDGRMVEAKKAVPR 83
+ +++GR + A R
Sbjct: 267 LDGQSLEGRTIRVSVAEDR 285
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
++ + ++G + +EE L E F G VV + KDR T + +G+GFV F AD
Sbjct: 21 RNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
Query: 62 IVIKEKHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
IK + I G+ + KA Q S + G+ +F+G L V E
Sbjct: 81 YAIKVLNMIKLYGKPIRVNKA----SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
Query: 120 SDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F FG I T+ +M D +T RGFGFI+YDS EA D +
Sbjct: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 15/193 (7%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S N +LF+G + + +L E F G+V ++ D++TGR+RGFGFV S A +
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 63 VIKEKHN--IDGRMVEAKK---AVPRDDQTVLSRNSGSIHGSP-GPGR------TRKIFV 110
++ + +DGR + PR + + N P GP R ++ V
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHV 200
Query: 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH- 169
G LA V + F + G + + V+YD + R RGFGF+T+ S + VD ++T
Sbjct: 201 GNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA-IRTLDG 259
Query: 170 -ELNGKMVEVKRA 181
+LNG+ + V A
Sbjct: 260 ADLNGRAIRVSPA 272
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
+ ++ +G ++W L F G+V+EA ++ DR +GR+RGFGFV FS D I
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 65 K--EKHNIDGRMVEAKKAVPR 83
+ + +++GR + A R
Sbjct: 255 RTLDGADLNGRAIRVSPADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 15/193 (7%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S N +LF+G + + +L E F G+V ++ D++TGR+RGFGFV S A +
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 63 VIKEKHN--IDGRMVEAKK---AVPRDDQTVLSRNSGSIHGSP-GPGR------TRKIFV 110
++ + +DGR + PR + + N P GP R ++ V
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHV 200
Query: 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH- 169
G LA V + F + G + + V+YD + R RGFGF+T+ S + VD ++T
Sbjct: 201 GNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA-IRTLDG 259
Query: 170 -ELNGKMVEVKRA 181
+LNG+ + V A
Sbjct: 260 ADLNGRAIRVSPA 272
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
+ ++ +G ++W L F G+V+EA ++ DR +GR+RGFGFV FS D I
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 65 K--EKHNIDGRMVEAKKAVPR 83
+ + +++GR + A R
Sbjct: 255 RTLDGADLNGRAIRVSPADSR 275
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADIVI 64
KLFIGG+S+ T E LRE FS YGEV++A I+ DR TGR+RGFGF+ F+ + A + I
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 65 KEKHNIDGRMVEAKKAVPR 83
+ ++ GR V A R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKV 163
T K+F+GG++ + E+ ++ F ++G + D ++ D T R RGFGFIT++S EEA +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 164 LLKTFHELNGKMVEVKRA 181
+L+G+ V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + +R YF +G+++EAVI+ D+ TG+++G+GFV F DP A +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 67 KHN-IDGRMVEAKKA 80
+ IDGR A
Sbjct: 77 PNPVIDGRRANCNIA 91
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + + YF+QFG I + V++ D NT + +G+GF+T+ E+ +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 77 PNPVIDGRRANCNIA 91
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L E FS+ Y V A ++ D TGR++G+GFV F D + + +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 67 KHNI--DGRMVEAKKAVPRDD--QTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ + R + A PR +++G+ S IFVGGL S VT+ D
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDL 311
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
K+ F Q+G I V + +G GF+ + + ++ L K LNG M+
Sbjct: 312 KQTFSQYGEIASVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTMI 355
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+N L+IG + E L F++ GE+ +++++ +G + G+GF F A A+ V
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
++ I M A +A + T + + GS + + IFVG LA+ VT+S
Sbjct: 155 LQNYAGI--LMPNADQAFRLNWATFSTGDKGSDNVT-----DLSIFVGDLAADVTDSVLH 207
Query: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+ F + ++ V+YD NT R +G+GF+ + E + + +
Sbjct: 208 ETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T ++ LRE+F YG+++EAVI+ D+ TGR++G+GFV F D A +E
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 94 GSIHGSP---GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150
GS +GSP G K+FVGGLA + +++F+++G I + V++ D T R +G+G
Sbjct: 3 GSNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYG 62
Query: 151 FITYDSEEAVDKVLLKTFHELNGK 174
F+T+ ++ K + +NG+
Sbjct: 63 FVTFKDADSAKKACEEPTVIINGR 86
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T ++ LRE+F YG+++EAVI+ D+ TGR++G+GFV F D A +E
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 94 GSIHGSP---GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150
GS +GSP G K+FVGGLA + +++F+++G I + V++ D T R +G+G
Sbjct: 3 GSNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYG 62
Query: 151 FITYDSEEAVDKVLLKTFHELNGK 174
F+T+ ++ K + +NG+
Sbjct: 63 FVTFKDADSAKKACEEPTVIINGR 86
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
++ KLF+G +D E+L F G V A ++ +R T +RGFGFV S A+
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 IKEKHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
+++ + D GR + KA P+ SR + +I+V LA V S
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKG-----SRPERTERAPRTFEPVLRIYVANLAWEVDNSR 221
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++ F + G I V+YD T R RGFGF+T E ++ +
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAI 264
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ DT+++ +RE G++VE ++KDR TG ++G+ FV + VA I +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
HN + + +T+ S + H ++F+G + T TE +F+K
Sbjct: 165 IHNKEFK-----------GKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAV 204
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 205 EGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ DT+++ +RE G++VE ++KDR TG ++G+ FV + VA I +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
HN + + +T+ S + H ++F+G + T TE +F+K
Sbjct: 165 IHNKEFK-----------GKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAV 204
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 205 EGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ DT+++ +RE G++VE ++KDR TG ++G+ FV + VA I +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
HN + + +T+ S + H ++F+G + T TE +F+K
Sbjct: 165 IHNKEFK-----------GKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAV 204
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + + ++ D N R RGF F+ Y
Sbjct: 205 EGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADI 62
N KLF+GGIS++T E+ L + FS YG+V++A I+ DR +GR++GFGFV ++ + A + I
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 63 VIKEKHNIDGRMVEAKKAV--PRD 84
+ ++ GR V A PRD
Sbjct: 103 QALDGQDLYGRRVGVNFANERPRD 126
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGG++ E F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 166 KTFHELNGKMVEVKRA 181
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADI 62
N KLF+GGIS++T E+ L + FS YG+V++A I+ DR +GR++GFGFV ++ + A + I
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 63 VIKEKHNIDGRMVEAKKAV--PRD 84
+ ++ GR V A PRD
Sbjct: 103 QALDGQDLYGRRVGVNFANERPRD 126
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGG++ E F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 166 KTFHELNGKMVEVKRA 181
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ +S TE+ L+ F AYG + AV+M+D GR++ FGFV F + A+ K
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFEN---AEDAAKAV 268
Query: 68 HNIDGRMVE--------AKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGG 112
++G+ V+ A+K R+ +QTV G +++
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQG-------LNLYLKN 321
Query: 113 LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN 172
L ++T+ K+ F +FGTIT +M D N RG GF+ + + E + L E+N
Sbjct: 322 LDDSITDEKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEASRAL----GEMN 376
Query: 173 GKMV 176
GKM+
Sbjct: 377 GKMI 380
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 26/185 (14%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S +FI + + L + FS++G+++ I D +G+++G+GFV F A
Sbjct: 116 KSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQ 174
Query: 62 IVIKEKHNIDGRMVEAKKAV------PRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
I + ++G ++ K+ +D VLS+ + ++V L+
Sbjct: 175 NAIDK---LNGMLINDKQVFVGHFLRKQDRDNVLSKT-----------KFNNVYVKNLSE 220
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ TE D K F +GTIT V+M D + R + FGF+ +++ E K + LNGK
Sbjct: 221 SFTEDDLKNEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDAAKAV----EALNGKK 275
Query: 176 VEVKR 180
V+ K
Sbjct: 276 VDDKE 280
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 22/236 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++G + + + +L + F+ G+VV + +D T R+ G+G+V F++P A
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA------- 86
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR--TRKIFVGGLASTVTESDFKKY 125
R ++ P +++++ S H P + T IF+ L T+
Sbjct: 87 ----ARALDVLNFTPMNNKSIRVMYS---HRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA-VPK 184
F FG I + D + Q +G+GF+ +++E++ + K LNG ++ K+ V
Sbjct: 140 FSSFGQIMSCKIATDGSGQS-KGYGFVQFEAEDSAQNAIDK----LNGMLINDKQVFVGH 194
Query: 185 ELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
L + L + V + FT+ N G YG A GRS
Sbjct: 195 FLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRS 250
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 91/213 (42%), Gaps = 33/213 (15%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE- 66
+F+G +S + T+ L FSAY +A +M D+ TGR+RGFGFV F + A I +
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 67 -------------------KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSP--GPGRT 105
N + + E+K V T + SP P T
Sbjct: 193 TGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYT 252
Query: 106 RKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDK 162
++VG LA VT D +F GTI DV V QR +GFGF+ Y + EA
Sbjct: 253 -TVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRV------QRDKGFGFVRYSTHGEAALA 305
Query: 163 VLLKTFHELNGKMVEVKRAVPKELSPGPSRSPL 195
+ + L GK ++ K PG + +PL
Sbjct: 306 IQMGNTRFLFGKPIKCSWGS-KPTPPGTASTPL 337
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KL+ G + + L YG ++ DR TG++RGF FV S + VI+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ- 172
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPG----PGRTRKIFVGGLASTVTESDF 122
N+DG+ + R + S P P K+FVG LA TVT
Sbjct: 173 --NLDGKEFMGRTL----------RVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESL 220
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-LKTFHELNGKMVEVKRA 181
+ F + GT+ V++D T + RG+GF++Y ++ +D L + EL G+ + V A
Sbjct: 221 TQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + TE+ L F + V E I+KD+ T +RG FV+ AD +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + G + K+F+G L ++E +
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSAL 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
F ++GTI D+ ++ + Q +G F+ Y+++E L +NGK
Sbjct: 124 FSKYGTIKDLQILRG-SQQTSKGCAFLKYETKEQA----LAALEAINGK 167
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + TE+ L F + V E I+KD+ T +RG FV+ AD +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + G + K+F+G L ++E +
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSAL 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
F ++GTI D+ ++ + Q +G F+ Y+++E L +NGK
Sbjct: 124 FSKYGTIKDLQILRG-SQQTSKGCAFLKYETKEQA----LAALEAINGK 167
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++G + E L F+ GEV A +++++ TG++ G+GFV F A+A+ V++
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ-- 175
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR--------KIFVGGLASTVTE 119
N +G M +P DQ N + + G G R +FVG LA VT+
Sbjct: 176 -NFNGTM------MPNTDQ-AFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTD 227
Query: 120 SDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG----- 173
+ ++ F +F +I V+ D NT R +G+GF+ + E + + E+NG
Sbjct: 228 AMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMT----EMNGVYCSS 283
Query: 174 KMVEVKRAVPKELSPGPSR 192
+ + V A PK+ P +
Sbjct: 284 RPMRVGVATPKKTYGNPQQ 302
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 8 LFIGGISWDTTEERLREYF-SAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L+E F S + + A ++ D TGR++G+GFV F D + + E
Sbjct: 216 VFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTE 275
Query: 67 KHNI--DGRMVEAKKAVPRD----------DQTVLSRNSGSIHG-------SPGPGRTRK 107
+ + R + A P+ VL+ G +G S G
Sbjct: 276 MNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTT 335
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVD 161
IFVGGL S +++ D ++ F QFG + V + +G GF+ ++EEA+
Sbjct: 336 IFVGGLDSDISDEDLRQPFLQFGDVISVKIPVG------KGCGFVQLADRKNAEEAIQ 387
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ IS +T+E L++ F +G + A +MKD G++R FGFV F P A +++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 68 HNI---DGRMV---EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
+ D +++ A++ R+ +Q +SR + G+ +++ L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYE-KLQGA-------NLYLKNLD 321
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
E K F +FGT+T VM D + +G GF+ + + E +K L +E+NGK
Sbjct: 322 DDFNEEKLKDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGK 376
Query: 175 MV 176
+V
Sbjct: 377 LV 378
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S +G +FI + + L + F+A+G V+ + D G+++G+GFV F + A
Sbjct: 114 KSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAK 172
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGLAST 116
IK+ +DG ++ D Q V + +GSP + ++V ++
Sbjct: 173 SAIKQ---LDGMLIN-------DKQVYVGFFVRHQERARTNGSP---KFTNVYVKNISEA 219
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
T+ D K+ F FG IT VM D N + R FGF+ + S ++ + K LNG +
Sbjct: 220 STDEDLKQLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK----LNGTAI 274
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
N L++G + E +L + FS +VV + +D+T + G+ +V F++ A
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTN---AQDAA 85
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
K ++ + K + + S+ S+ S G G +F+ L +++
Sbjct: 86 NAKELLNFTPLNEKPI-----RIMFSQRDPSVRKS-GSG---NVFIKNLDTSIDHKALHD 136
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F FG + V D N Q +G+GF+ +D+EEA + +L+G ++ K+
Sbjct: 137 TFAAFGPVLSCKVALDGNGQS-KGYGFVQFDNEEAAKSAI----KQLDGMLINDKQ 187
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ IS +T+E L++ F +G + A +MKD G++R FGFV F P A +++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 68 HNI---DGRMV---EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
+ D +++ A++ R+ +Q +SR + G+ +++ L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYE-KLQGA-------NLYLKNLD 321
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
E K F +FGT+T VM D + +G GF+ + + E +K L +E+NGK
Sbjct: 322 DDFNEEKLKDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGK 376
Query: 175 MV 176
+V
Sbjct: 377 LV 378
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S +G +FI + + L + F+A+G V+ + D G+++G+GFV F + A
Sbjct: 114 KSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAK 172
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQT-----VLSRNSGSIHGSPGPGRTRKIFVGGLAST 116
IK+ +DG ++ D Q V + +GSP + ++V ++
Sbjct: 173 SAIKQ---LDGMLIN-------DKQVYVGFFVRHQERARTNGSP---KFTNVYVKNISEA 219
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
T+ D K+ F FG IT VM D N + R FGF+ + S ++ + K LNG +
Sbjct: 220 STDEDLKQLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK----LNGTAI 274
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
N L++G + E +L + FS +VV + +D+T + G+ +V F++ A
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTN---AQDAA 85
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
K ++ + K + + S+ S+ S G G +F+ L +++
Sbjct: 86 NAKELLNFTPLNEKPI-----RIMFSQRDPSVRKS-GSG---NVFIKNLDTSIDHKALHD 136
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F FG + V D N Q +G+GF+ +D+EEA + +L+G ++ K+
Sbjct: 137 TFAAFGPVLSCKVALDGNGQS-KGYGFVQFDNEEAAKSAI----KQLDGMLINDKQ 187
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF-SDPAVADIVIK 65
KLFIGG+S++ ++ LR+ F+ YG+VVEA ++ DR TGR+RGFGFV F S+ + +
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 66 EKHNIDGRMVEAKKAVPR 83
+ +++GR + A R
Sbjct: 97 DGQDLNGRNIRVSYANDR 114
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ V + + F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 167 TFHELNGKMVEVKRAVPKE 185
+LNG+ + V A ++
Sbjct: 97 DGQDLNGRNIRVSYANDRQ 115
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + TE+ L F + V E I+KD+ T +RG FV+ AD +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + G + K+F+G L ++E +
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSAL 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
F ++GTI D+ ++ G F+ Y+++E L +NGK
Sbjct: 124 FSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQA----LAALEAINGK 168
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T E L + FS YGE+V++ I+ DR TGR+RGFGFV F++ + I+
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 67 K--HNIDGRMVEAKKA 80
++DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D G+L++G + + T +L + F+ G VV I+ DR T R+RGF FV A
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
Query: 64 IKEKHNIDGRMVEAKKA------VPRDDQTVLS----RNS-GSIHGSPGPGRTRKIFVGG 112
I+ DG V + A VP+ + ++ RNS SP KI+ G
Sbjct: 167 IR---MFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSP-----HKIYAGN 218
Query: 113 LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN 172
L + D + FD+ + ++Y+ + R RGFGF+T+++ E ++ L + +N
Sbjct: 219 LGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAAL----NAMN 274
Query: 173 GKMVEVK 179
G VEV+
Sbjct: 275 G--VEVQ 279
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 25/171 (14%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ + T+E L++ FS YG + AVIMKD G ++ FGFV F P A + EK
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAV-EK 164
Query: 68 HN----IDGRMV---EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGGL 113
N DG+++ A++ R+ +Q + R + G+ +++ L
Sbjct: 165 LNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYE-KLQGA-------NLYLKNL 216
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++ + K+ F +FGTIT VM+D + +GFGF+ + + E K +
Sbjct: 217 DESINDEKLKEMFSEFGTITSCKVMFDAHGH-SKGFGFVAFSTSEEASKAI 266
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 15/160 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+F+ + + L + F+ +G V+ + D + G++ G+GFV + + A I++
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIEK- 74
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+DG +++ KKA + R S +GSP + ++V L T T+ D KK F
Sbjct: 75 --LDGMLIKDKKAFV---GYFIRRQERSENGSP---KFTNVYVKNLLETDTDEDLKKLFS 126
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEE----AVDKV 163
+G IT V+M D N + FGF+ + S + AV+K+
Sbjct: 127 TYGVITSAVIMKDENGN-SKCFGFVNFQSPDSAAAAVEKL 165
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 7 KLFIGGI--------SWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--D 56
KLFIGGI S+ T E LRE FS YGEV++A I+ DR TGR+RGFGF+ F+ +
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 57 PAVADIVIKEKHNIDGRMVEAKKAVPR 83
A + I + ++ GR V A R
Sbjct: 103 EASSAIQALDGQDLHGRRVRVNYANER 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 105 TRKIFVGGLAS--------TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
T K+F+GG+ + E+ ++ F ++G + D ++ D T R RGFGFIT++S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 157 -EEAVDKVLLKTFHELNGKMVEVKRA 181
EEA + +L+G+ V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+ F+GG++W T E L + FS YGE++++ I+ DR TGR+RGFGFV F+D I+
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 66 -EKHNIDGRMVEAKKA 80
++DGR + +A
Sbjct: 69 MNGQDMDGRNITVNEA 84
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ E+++ D +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+++G+ + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+S++ ++ LR+ F+ YG+VVEA ++ DR TGR+RGFGFV F+ A +
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-- 94
Query: 67 KHNIDGRMV 75
++DG++V
Sbjct: 95 --SMDGQVV 101
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 8 LFIGGISWDTTEERLREYFS-AYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L E FS Y V A ++ D TGR++G+GFV F D + E
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 67 KHNI--DGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRT----RKIFVGGLASTVTES 120
+ + R + A PR + G +G+P T IFVGGL + T
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGY--QQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAE 306
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
D ++ F Q+G I V + +G GF+ + + ++ L K LNG V
Sbjct: 307 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTV 352
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 16/191 (8%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+DN L++G + E L F++ GE+ +++++ T + G+GFV F+ A+
Sbjct: 90 ADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEK 149
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
V++ G ++ + R + S H IFVG LA+ VT++
Sbjct: 150 VLQ---TYAGMLMPNTEQPFRLNWATFSTGD---HKRSDNVPDLSIFVGDLAADVTDTML 203
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-----KMV 176
+ F D++ ++ V++D NT R +G+GF+ + + K L +E+NG + +
Sbjct: 204 LETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKAL----NEMNGVFCSSRAM 259
Query: 177 EVKRAVPKELS 187
+ A P++ S
Sbjct: 260 RIGAATPRKSS 270
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++G + + T+ +L + F+ G+VV + +D TT R+ G+G+V +S+P A
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDA------- 88
Query: 68 HNIDGRMVEAKKAVP---RDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
R ++ P R + + S SI S G G IF+ L +
Sbjct: 89 ----ARALDVLNFTPLNNRPIRIMYSHRDPSIRKS-GQG---NIFIKNLDKAIDHKALHD 140
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F FG I V D + Q +G+GF+ +D+EEA K + K LNG ++ K+
Sbjct: 141 TFSSFGNILSCKVAVDGSGQS-KGYGFVQFDTEEAAQKAIEK----LNGMLLNDKQ 191
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S G +FI + + L + FS++G ++ + D +G+++G+GFV F A
Sbjct: 118 KSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQ 176
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
I++ ++G ++ K+ R S + +FV L+ + T+ +
Sbjct: 177 KAIEK---LNGMLLNDKQVYVGPFLRKQERESTGDRA-----KFNNVFVKNLSESTTDDE 228
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
KK F +FGTIT VVM D + + + FGF+ ++S + + + LNGK ++ K
Sbjct: 229 LKKTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAARAV----EALNGKKIDDKE 282
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T + L + FS +GE+ ++ ++ DR TGR+RGFGFV F++ I+E
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 67 K--HNIDGRMVEAKKA 80
+IDGR + +A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+ FVGGLA ++ F +FG ITD V+ D T R RGFGF+T+ A +K +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 167 TFHELNGKMVE 177
E+NG+ ++
Sbjct: 65 AIEEMNGQDID 75
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG+SW E+ L++ FS++G+V E I+ D+ +GRARGFGFV+FS+ D
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSN---EDAAKSA 93
Query: 67 KHNIDGRMV 75
K +DG+ +
Sbjct: 94 KDAMDGKAL 102
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
K+FVGGL+ +V E K F FG +T+V ++YD ++ R RGFGF+ + +E+A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDA 89
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 21/188 (11%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L FS GEV+ I++++ TG+ G+GF+ F + A+ V++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 68 HNIDGRMVEAKKAVPRDDQTV-LSRNSGSI-HGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ +P +QT L+ S I P G IFVG LA VT+ ++
Sbjct: 77 NGTQ---------MPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-----KMVEVK 179
F +G++ V+ D NT R +G+GF+ + E ++ + E+NG + + +
Sbjct: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM----SEMNGVYCSTRPMRIS 183
Query: 180 RAVPKELS 187
A PK+ +
Sbjct: 184 AATPKKTT 191
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F + TE + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 62 IVIKEKHNIDGRMVEAKKAVPR----DDQTVLSRNSGSIHGSPGP--GRTRKIFVGGLAS 115
+ I + G+++ + + + + V S + G GP RK++VG L
Sbjct: 271 MAIA----LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHF 326
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LNGK+
Sbjct: 327 NMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F + TE + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 62 IVIKEKHNIDGRMVEAKKAVPR----DDQTVLSRNSGSIHGSPGP--GRTRKIFVGGLAS 115
+ I + G+++ + + + + V S + G GP RK++VG L
Sbjct: 271 MAIA----LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHF 326
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LNGK+
Sbjct: 327 NMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F + TE + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 62 IVIKEKHNIDGRMVEAKKAVPR----DDQTVLSRNSGSIHGSPGP--GRTRKIFVGGLAS 115
+ I + G+++ + + + + V S + G GP RK++VG L
Sbjct: 271 MAIA----LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHF 326
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+TES ++ F+ FGT+ V + D T +GFGFI + E K LNGK+
Sbjct: 327 NMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+ F+GG++W T E L + FS YGE+V++ I+ DR TGR+RGFGFV F++ + I+
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 66 -EKHNIDGRMVEAKKA 80
++DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D E L+E+ GEVV+ IMK + +GF FV + + +A I+E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ T ++N ++F+G + + E D KK
Sbjct: 171 LNNTEFKGRKIKC--------STSQAKN--------------RLFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKD-RTTGRARGFGFVVFSDPAVADIVI 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + A+
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
++ + ++ + V D +NS S S + + ++V L VT+ KK
Sbjct: 251 QKMMSPSFKLGDNSPTVSWAD----PKNSDSSASS----QVKAVYVKNLPKNVTQEQLKK 302
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVKRAVP 183
F+ G IT VV+ + Q GF+ + K L T +EL+G+ +E A P
Sbjct: 303 LFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKP 362
Query: 184 K 184
+
Sbjct: 363 Q 363
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D E L+E+ GEVV+ IMK + +GF FV + + +A I+E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ T ++N ++F+G + + E D KK
Sbjct: 171 LNNTEFKGRKIKC--------STSQAKN--------------RLFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKD-RTTGRARGFGFVVFSDPAVADIVI 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + A+
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
++ + ++ + V D +NS S S + + ++V L VT+ KK
Sbjct: 251 QKMMSPSFKLGDNSPTVSWAD----PKNSDSSASS----QVKAVYVKNLPKNVTQEQLKK 302
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVKRAVP 183
F+ G IT VV+ + Q GF+ + K L T +EL+G+ +E A P
Sbjct: 303 LFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKP 362
Query: 184 K 184
+
Sbjct: 363 Q 363
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D E L+E+ GEVV+ IMK + +GF FV + + +A I+E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ T ++N ++F+G + + E D KK
Sbjct: 171 LNNTEFKGRKIKC--------STSQAKN--------------RLFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKD-RTTGRARGFGFVVFSDPAVADIVI 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + A+
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
++ + ++ + V D +NS S S + + ++V L VT+ KK
Sbjct: 251 QKMMSPSFKLGDNSPTVSWAD----PKNSDSSASS----QVKAVYVKNLPKNVTQEQLKK 302
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVKRAVP 183
F+ G IT VV+ + Q GF+ + K L T +EL+G+ +E A P
Sbjct: 303 LFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKP 362
Query: 184 K 184
+
Sbjct: 363 Q 363
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D E L+E+ GEVV+ I K + RGF FV + +A IKE
Sbjct: 351 EVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKE 410
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+N + + +G I S ++R +F+G + + E D KK
Sbjct: 411 LNNTEFK-------------------AGKIKCSKSQAKSR-LFIGNIPRSWGEKDLKKVV 450
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RG+ FI Y + + +
Sbjct: 451 SDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAE 487
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG+S+ TTE+ L + FS YG+VVEA ++ DR + +++G+GFV F+ A+ I E
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 67 KHN--IDGRMVEAKKAVP 82
+ ++GR+V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL+ TE F +G + + V+ D +++ +G+GF+T+ S++ +K + +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 167 TFHE-LNGKMVEVKRAVP 183
+ LNG++V V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 41/201 (20%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF-----SDPAVADI 62
+F+G +S + T+ L FS Y +A +M D+ TGR+RGFGFV F + A+ D+
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 63 V--------------------IKEKHNIDGR-MVEAKKAVPRDDQTVLSRNSGSIHGSPG 101
I+EK N D + +VE D + + S +
Sbjct: 209 TGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDV----PENN 264
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDS--E 157
P T ++VG L S T+ D ++F G I +V V QR +GFGF+ Y + E
Sbjct: 265 PQYT-TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 317
Query: 158 EAVDKVLLKTFHELNGKMVEV 178
A+ + L GK+++
Sbjct: 318 AALAIQMGNAQSYLCGKIIKC 338
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 113/278 (40%), Gaps = 47/278 (16%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSD-----PAVADI 62
+F+G +S + T+ L FS Y +A +M D TGR++G+GFV F D A+ D+
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 63 VIKEKHNIDGRMVEAKKAV--------PRDDQTVLSRNSGSIHG--------SP--GPGR 104
K N R A K D Q + +GS G +P P
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKV 163
T ++VG L VT+++ F G V+ + Q +GFGF+ Y++ EEA +
Sbjct: 267 T-TVYVGNLPHDVTQAELHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAI 321
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRSPL---GGYSYGLNRVNSFLNGFTQGYTPNT 220
+ + GK ++ K PG + +PL Y + G QGYT
Sbjct: 322 QMANGRPVRGKTMKCSWG-SKPTPPGTASNPLPPPAAQPYQILPT----AGMNQGYTAAE 376
Query: 221 VGGYGLRMDGRFSPVAG----------GRSGFAPLGSG 248
+ Y ++ + V+G G+ G AP G
Sbjct: 377 LLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMG 414
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 113/278 (40%), Gaps = 47/278 (16%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSD-----PAVADI 62
+F+G +S + T+ L FS Y +A +M D TGR++G+GFV F D A+ D+
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 63 VIKEKHNIDGRMVEAKKAV--------PRDDQTVLSRNSGSIHG--------SP--GPGR 104
K N R A K D Q + +GS G +P P
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKV 163
T ++VG L VT+++ F G V+ + Q +GFGF+ Y++ EEA +
Sbjct: 267 T-TVYVGNLPHDVTQAELHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAI 321
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRSPL---GGYSYGLNRVNSFLNGFTQGYTPNT 220
+ + GK ++ K PG + +PL Y + G QGYT
Sbjct: 322 QMANGRPVRGKTMKCSWG-SKPTPPGTASNPLPPPAAQPYQILPT----AGMNQGYTAAE 376
Query: 221 VGGYGLRMDGRFSPVAG----------GRSGFAPLGSG 248
+ Y ++ + V+G G+ G AP G
Sbjct: 377 LLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMG 414
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 113/278 (40%), Gaps = 47/278 (16%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSD-----PAVADI 62
+F+G +S + T+ L FS Y +A +M D TGR++G+GFV F D A+ D+
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 63 VIKEKHNIDGRMVEAKKAV--------PRDDQTVLSRNSGSIHG--------SP--GPGR 104
K N R A K D Q + +GS G +P P
Sbjct: 191 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 250
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKV 163
T ++VG L VT+++ F G V+ + Q +GFGF+ Y++ EEA +
Sbjct: 251 T-TVYVGNLPHDVTQAELHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAI 305
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRSPL---GGYSYGLNRVNSFLNGFTQGYTPNT 220
+ + GK ++ K PG + +PL Y + G QGYT
Sbjct: 306 QMANGRPVRGKTMKCSWG-SKPTPPGTASNPLPPPAAQPYQILPT----AGMNQGYTAAE 360
Query: 221 VGGYGLRMDGRFSPVAG----------GRSGFAPLGSG 248
+ Y ++ + V+G G+ G AP G
Sbjct: 361 LLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMG 398
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S+ +LF+ + + TTEE L E+FS +G V +A ++ D+ T R++G ++ FS P A
Sbjct: 326 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAAR 385
Query: 63 VIKEKHN--IDGRMVEAKKAVPRDDQTVLSRNSGS 95
++E N GR++ A+PR ++N GS
Sbjct: 386 ALEESDNSIFQGRLLHVMPAIPRHSNNEENKNQGS 420
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 8 LFIGGISWDTTEERLREYFSAY---GEVVEAVIMKDRTTGR--ARGFGFVVFSDPAVADI 62
LF+ +++ TT+E LRE+FS + G ++ + K G+ + GFGFV F A
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATS 702
Query: 63 VIKEKHN--IDGR-MVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
V + +DG ++ V DD V + + K+ V +A TE
Sbjct: 703 VCNDLQGTVLDGHALILQLCHVKNDDDKVQKK-------VEKDKSSTKLLVKNVAFEATE 755
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL--LKTFHELNGKMVE 177
D ++ F FG I + + RGF F+ Y +++ L L + H L G+ +
Sbjct: 756 KDLRQLFSPFGQIKSLRLPMKFGNH--RGFAFVEYVTQQEAQNALTALSSTH-LYGRHLV 812
Query: 178 VKRA 181
++RA
Sbjct: 813 IERA 816
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++ + D +E LRE FS++G+++ + KD + G ++GFGFV F +P A ++
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 68 HNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK--------IFVGGLASTV 117
+ + +++ +A + ++ + +H R + I+V + V
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQI------LHQQFEEKRKEQVLKYKGSNIYVKNIDDNV 303
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--ELNGKM 175
++ + +F GTIT +M D + +GFGF+ + + E +K + +FH +GK
Sbjct: 304 SDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKA-VNSFHGFMFHGKP 361
Query: 176 VEVKRAVPKE 185
+ V A KE
Sbjct: 362 LYVSLAQRKE 371
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDP--AVADIVIK 65
L++G + D ++ +L + FS + + I +D ++G++ +G+V F P A+ I +K
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
++G+ + + + SR S +FV LA ++ S +
Sbjct: 72 NHSTLNGKAI----------RVMWSRRDPDARKSC----IGNVFVKNLAESIDNSGLEDM 117
Query: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
F +FG I + VVM + + +G+GF+ +++EE+ + + LNG +V
Sbjct: 118 FKKFGNILSSKVVMSEDG--KSKGYGFVQFETEESANAAI----ERLNGYLV 163
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 23/186 (12%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEA-VIMKDRTTGRARGFGFVVFSDPAVADIVI 64
G +F+ ++ L + F +G ++ + V+M + G+++G+GFV F A+ I
Sbjct: 98 GNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE--DGKSKGYGFVQFETEESANAAI 155
Query: 65 KEKHN---IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG-RTRKIFVGGLASTVTES 120
E+ N + + + K V + D+ S GP R +++ L ++E+
Sbjct: 156 -ERLNGYLVGDKQIYVGKFVKKSDRI-----------SSGPDTRYTNLYMKNLDLDISET 203
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--ELNGKMVEV 178
++ F FG I + V D N +GFGF+ +D+ E + ++T + +L K++ V
Sbjct: 204 LLREKFSSFGKIISLAVAKDSNGM-SKGFGFVNFDNPEDAKRA-METMNGLQLGSKILYV 261
Query: 179 KRAVPK 184
RA K
Sbjct: 262 ARAQKK 267
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF--SDPAVADI 62
+ KL++GGIS+ T + LRE F+ YG+V++A ++ DR GR++GFGFV F S+ A A +
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 63 VIKEKHNIDGRMVEAKKAVPR 83
+ + GR V A R
Sbjct: 99 QAMDNQELHGRTVRVNYAQER 119
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F + TE + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 257
Query: 62 IVIKEKHNIDGRMVEAKKAVPR---DDQTVLSRNSGSIHGSPGP--GRTRKIFVGGLAST 116
+ I + G+++ + + + ++ ++ N+ S GP RK++VG L
Sbjct: 258 MAIA----LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFN 313
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+TE++ ++ F+ FG I V + D T +GFGF+ + E K LNGK+
Sbjct: 314 MTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGKL 367
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 15/92 (16%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M S N LF+GGIS++T LR++FS YG+V++A I++DR TGR RGFGFV F+ A
Sbjct: 31 MSSAN--LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEA 84
Query: 61 -------DIVIKEKHNID--GRMVEAKKAVPR 83
+ IK N D GR V A +
Sbjct: 85 SAALQTMSLAIKSMKNQDLYGRKVRVNYATEK 116
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 36/225 (16%)
Query: 8 LFIGGISWDTTEERLREYF-SAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D ++ L E F + Y V A ++ DRTTGR +G+GFV F+D + + E
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 67 KHNIDGRMVEAK--KAVPRDDQTVLSRNSGSIHGSPGPGRTRK-------IFVGGLASTV 117
+ G + + + P ++ + ++ S + + +P G + IFVG L V
Sbjct: 229 ---MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNV 285
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVLLKTFHELNGKM 175
T+ K+ F Q+G + V + P G GF+ + + ++ L LNG +
Sbjct: 286 TDEHLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEAL----RVLNGTL 333
Query: 176 VEVKRAVPKELSPGPSRSPLGGYSY----GLNRVNSFLNGFTQGY 216
+ + LS G RSP + N +S+ G+ QGY
Sbjct: 334 LGGQNV---RLSWG--RSPANKQTQQDPNQWNGSSSYFGGYAQGY 373
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L FS GEV +++++ T ++ G+GF+ F A A+ V++
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQ-- 133
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF- 126
+G ++ R + S SG P T IFVG LA+ V++ + F
Sbjct: 134 -TFNGTIMPNGGQNFRLNWATFS--SGEKRHDDSPDYT--IFVGDLAADVSDHHLTEVFR 188
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
++ ++ V+ D T R +G+GF+ + E ++ E+ G + + P +
Sbjct: 189 TRYNSVKGAKVVIDRTTGRTKGYGFVRFADESE----QMRAMTEMQGVLCSTR---PMRI 241
Query: 187 SPGPSRS 193
P +++
Sbjct: 242 GPASNKN 248
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADIVIK 65
L++G + D T+ +L + FS + ++ A + KD TG++ +G+V S A+ I +K
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+++G+++ LSR++ + G +FV LA+++
Sbjct: 77 NHSSLNGKVIRV---------MWLSRDADARKSGKG-----NVFVKNLAASIDNVGLHDL 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F ++G I + + + +GFG+I +DSEE+ + + K +NG V K+
Sbjct: 123 FQKYGNILSSKIARSEDG-KSKGFGYIQFDSEESANVAIQK----MNGSTVRDKQ 172
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S G +F+ ++ L + F YG ++ + I + G+++GFG++ F A+
Sbjct: 99 KSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESAN 157
Query: 62 IVIKEKH--NIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ I++ + + + + K + + ++++ ++ + ++V L VTE
Sbjct: 158 VAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDA----------KFTNLYVKNLDPVVTE 207
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+ F FG I + + D N Q +GFGF+ YDS
Sbjct: 208 KHLGEKFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDS 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++ + TE+ L E FS++G++V I KD G+++GFGFV + P D +
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSP---DDARRAM 251
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR---KIFVGGLASTVTESDFKK 124
+DG +K Q + R H G I+V + ++V + + +
Sbjct: 252 EAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRD 311
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+F G + VM D + +GFGF+ + +
Sbjct: 312 HFSACGEVLSAKVMRD-DKGTSKGFGFVCFST 342
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D E L+E+ GEVV+ IMK + +GF FV + + +A I+E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ T ++N ++F+G + + E D KK
Sbjct: 171 LNNTEFKGRKIKC--------STSQAKN--------------RLFIGNIPRSWGEKDLKK 208
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
G +T V ++ D N RGF FI Y + + +
Sbjct: 209 VVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IGGI +T+E+ LR + + GEV E +MK + A+G+ FV F +A +KE
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ SP + R +F+G + T D KK
Sbjct: 159 LNNSEFKGRKIKC---------------------SPSQVKHR-LFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IGGI +T+E+ LR + + GEV E +MK + A+G+ FV F +A +KE
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ SP + R +F+G + T D KK
Sbjct: 159 LNNSEFKGRKIKC---------------------SPSQVKHR-LFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IGGI +T+E+ LR + + GEV E +MK + A+G+ FV F +A +KE
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ SP + R +F+G + T D KK
Sbjct: 159 LNNSEFKGRKIKC---------------------SPSQVKHR-LFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IGGI +T+E+ LR + + GEV E +MK + A+G+ FV F +A +KE
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+N + GR ++ SP + R +F+G + T D KK
Sbjct: 159 LNNSEFKGRKIKC---------------------SPSQVKHR-LFIGSVPKEWTVEDMKK 196
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD 161
+ G + V ++ D ++ R RGF FI Y + +
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+N L+IG + E L F++ GE+ +++++ +G + G+GF F A A+ V
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
++ I M A +A + T + + GS + + IFVG LA+ VT+S
Sbjct: 155 LQNYAGI--LMPNADQAFRLNWATFSTGDKGSDNVT-----DLSIFVGDLAADVTDSVLH 207
Query: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+ F + ++ V+YD NT R +G+GF+ + E + + +
Sbjct: 208 ETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+DN L++G + E L F++ GE+ +++++ T + G+GFV F+ A+
Sbjct: 90 ADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEK 149
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
V++ G ++ + R + S H IFVG LA+ VT++
Sbjct: 150 VLQ---TYAGMLMPNTEQPFRLNWATFSTGD---HKRSDNVPDLSIFVGDLAADVTDTML 203
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVDKVLLKTFHELNG-----K 174
+ F D++ ++ V++D NT R +G+GF+ + D E + K +E+NG +
Sbjct: 204 LETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERS------KALNEMNGVFCSSR 257
Query: 175 MVEVKRAVPKELS 187
+ + A P++ S
Sbjct: 258 AMRIGAATPRKSS 270
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+LF+G + + + +L + F G VV I+ D T R+RGF FV + A+ I+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 66 -EKHNIDGRMVEAK-KAVPRDDQTVLSRNSGSIH----GSPGPGRTRKIFVGGLASTVTE 119
+ + GR ++ VP + V GS + SP KI+ G L +T
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRV---QMGSTYRGYVDSP-----HKIYAGNLGWDMTS 220
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--ELNGKMVE 177
+K F + + V+Y+ N + RG+GF+++++ E V+ V L + E+ G+ +
Sbjct: 221 QYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE-VALSAMNGVEVQGRPLR 279
Query: 178 VKRAV 182
+K AV
Sbjct: 280 LKLAV 284
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K++ G + WD T + LR+ F+ ++ A ++ +R G++RG+GFV F ++ +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 67 KH--NIDGRMVEAKKAVPRDDQTVLSRNSG 94
+ + GR + K AV + L +N G
Sbjct: 268 MNGVEVQGRPLRLKLAVDNRKPSSLDQNKG 297
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+LF+G + + + +L + F G VV I+ D T R+RGF FV + A+ I+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 66 -EKHNIDGRMVEAK-KAVPRDDQTVLSRNSGSIH----GSPGPGRTRKIFVGGLASTVTE 119
+ + GR ++ VP + V GS + SP KI+ G L +T
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRV---QMGSTYRGYVDSP-----HKIYAGNLGWDMTS 220
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--ELNGKMVE 177
+K F + + V+Y+ N + RG+GF+++++ E V+ V L + E+ G+ +
Sbjct: 221 QYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE-VALSAMNGVEVQGRPLR 279
Query: 178 VKRAV 182
+K AV
Sbjct: 280 LKLAV 284
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K++ G + WD T + LR+ F+ ++ A ++ +R G++RG+GFV F ++ +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 67 KH--NIDGRMVEAKKAVPRDDQTVLSRNSG 94
+ + GR + K AV + L +N G
Sbjct: 268 MNGVEVQGRPLRLKLAVDNRKPSSLDQNKG 297
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++ + +E +R F YG +VE V+++D+ TG +G V +S AD+ IK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 67 KHNI-----DGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
N + V + A + ++ L ++ P K++VG + + ++ +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE---AVDKVLLKTF 168
++ F +G I DVVV+ R RG+GF+ + + E A K L +TF
Sbjct: 195 IEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FV L+ T+ + F FG +T+ ++ D NTQRP+GFGF++Y SE +K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKAR-- 65
Query: 167 TFHELNGKMVE-----VKRAVPKE 185
LNG++V+ V+ A PK+
Sbjct: 66 --KALNGRIVDGRLIFVEHAKPKD 87
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+ +S+ TT+++L FS +G + EA ++ D+ T R +GFGFV + A+ K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 67 KHN--IDGRMVEAKKAVPRD 84
+ +DGR++ + A P+D
Sbjct: 68 LNGRIVDGRLIFVEHAKPKD 87
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G+S++T E LR+ F +G+++E ++ + TG ++G+GFV F+ A KE
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 67 KHN--IDGRMVEAKKA 80
H +DGR + A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S+ +LF+ + + TTEE L E+FS +G V + ++ D+ T R++G F+ FS P A
Sbjct: 896 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAAR 955
Query: 63 VIKEKHN--IDGRMVEAKKAVPRDDQTVLSRNSGS 95
++E N GR++ A+P ++N GS
Sbjct: 956 ALEESDNSIFQGRLLHVIAAIPIHSNNEENKNQGS 990
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++ + +E +R F YG +VE V+++D+ TG +G V +S AD+ IK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 67 KHNI-----DGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
N + V + A + ++ L ++ P K++VG + + ++ +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT-YDSEEAVDKV--LLKTF 168
++ F +G I DVVV+ R RG+GF+ Y+ E A+ + L +TF
Sbjct: 195 IEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F GE+ +++++ T ++ G+GF+ F+ A A+ V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ-- 119
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G ++ R + S S GP T IFVG LA+ VT+ ++ F
Sbjct: 120 -TYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT--IFVGDLAADVTDYLLQETFR 176
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
++ ++ V+ D T R +G+GF+ + E ++ E+ G + + P +
Sbjct: 177 ARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE----QMRAMTEMQGVLCSTR---PMRI 229
Query: 187 SPGPSRSP 194
P +++P
Sbjct: 230 GPATNKNP 237
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L+E F A Y V A ++ DR TGR++G+GFV F+D + E
Sbjct: 157 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 216
Query: 67 KHNI--DGRMVEAKKAVPRD----DQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ R + A ++ Q S N P T IFVG L VT+
Sbjct: 217 MQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNT-TIFVGNLDPNVTDD 275
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVLLKTFHELNGKMV 176
++ F Q+G + V + P G GF+ + ++ + LNG ++
Sbjct: 276 HLRQVFTQYGELVHVKI--------PSGKRCGFVQFSDRSCAEEAI----RVLNGTLL 321
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
LFI + + L E FS +G V+ + D + G ++G GFV F + A I++
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEK- 172
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+DG ++ KK R+S P T ++V L+ + T D K+ F+
Sbjct: 173 --LDGMLMNDKKVYVGYFVRCQERSS--------PKFT-NVYVKNLSESYTYEDLKQLFN 221
Query: 128 QFGTITDVVVM-YDHNTQRPRGFGFITYDSEE----AVDKVLLKTFHELNGKMVEVKRAV 182
FG IT V++M YD+ + FGF+ + S + AV+K+ T ++ GK++ V RA
Sbjct: 222 SFGVITSVLIMKYDNGN--SKCFGFVNFQSSDSAATAVEKLNGSTTND--GKVLFVGRAQ 277
Query: 183 PK 184
K
Sbjct: 278 KK 279
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF--SDPAVADIVIK 65
+++ +S T E L++ F+++G + +IMK G ++ FGFV F SD A +
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAV--- 257
Query: 66 EKHN----IDGRMV---EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVG 111
EK N DG+++ A+K R+ +Q L R G+ +++
Sbjct: 258 EKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYE-KFQGA-------NLYLK 309
Query: 112 GLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHEL 171
+ ++ E K+ F +FGTIT VM D R +G GF+ + + E K + E+
Sbjct: 310 NIDKSLNEEKLKELFSEFGTITSCKVMSDARG-RSKGVGFVAFTTPEEASKAI----DEM 364
Query: 172 NGKMV 176
NGK++
Sbjct: 365 NGKII 369
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+L + W +T E +R F YG+V+ V + R RG FV P A +
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEASEALNS 148
Query: 66 -EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+ + DGR++ + A P+ ++ I T +FV D K+
Sbjct: 149 LQSYEFDGRIINIQYAKPKKEKIPPPVERKPI--------TYNLFVANFPYEARSKDVKE 200
Query: 125 YFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+FD G + V++ N +RP G+GF++Y S++ D+ L
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+L + W +T E +R F YG+V+ V + R RG FV P A +
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEASEALNS 148
Query: 66 -EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+ + DGR++ + A P+ ++ I T +FV D K+
Sbjct: 149 LQSYEFDGRIINIQYAKPKKEKIPPPVERKPI--------TYNLFVANFPYEARSKDVKE 200
Query: 125 YFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+FD G + V++ N +RP G+GF++Y S++ D+ L
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G+S TT+E+L E FS +G+++EA ++ DR +GR++GF FV +S A+ +E
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKA-RE 94
Query: 67 KHN---IDGRMVEAKKAVPRD 84
N +DG ++ A PR+
Sbjct: 95 GMNAKFLDGWVIFVDPAKPRE 115
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KL++G I + + L + +G V +A +M D+ + R+R F FV A+ E
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAA-AE 119
Query: 67 KHN---IDGRMVEAKKAVPRDDQTV--LSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
K N I GR E K + T L +G P K++VG LA VT
Sbjct: 120 KLNGTEIGGR--EIKVNITEKPLTTEGLPVQAGESTFVDSP---YKVYVGNLAKNVTSDS 174
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHE--LNGKMVEVK 179
KK+F + G V T + GFGF+T+ S+E V+ + +F+ L G+ + V
Sbjct: 175 LKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNALLEGQKIRVN 233
Query: 180 RA 181
+A
Sbjct: 234 KA 235
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE A+G + I++D+ TG ++G+GF ++ DPAV DI
Sbjct: 284 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 341
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE A+G + I++D+ TG ++G+GF ++ DPAV DI
Sbjct: 299 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 356
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ +S T++ L+ F YG + AV+M+D G+++ FGFV F AD +
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFE---NADAAAEAV 260
Query: 68 HNIDGRMVEAK-----KAVPRDDQTV--LSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
++G+ + K KA+ + ++ + R+ S+ + +++ L +VT+
Sbjct: 261 EALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDE 320
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+ F +FGT+T ++ D RG GF+ + + E + L E+NGKMV
Sbjct: 321 KLSELFSEFGTVTSCKILRDPQGIS-RGSGFVAFSTPEEATRAL----AEMNGKMV 371
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+FI + + L + FS +G ++ I D +G ++G+GFV F + A I +
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDK- 171
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
++G ++ K Q R++ + + ++V L+ +VT+ D K F
Sbjct: 172 --LNGMLLNDKPVYVGHFQRKQDRDNALSNA-----KFNNVYVKNLSESVTDDDLKNTFG 224
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITY 154
++GTIT VVM D + + + FGF+ +
Sbjct: 225 EYGTITSAVVMRDVDG-KSKCFGFVNF 250
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++G + D T+ +L + F+ G+VV I +D + ++ G+G+V FS+P
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPH--------- 76
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK-----IFVGGLASTVTESDF 122
+A KA+ + T L+ I S RK IF+ L +
Sbjct: 77 --------DAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKAL 128
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
F FG I + D + +G+GF+ +++EE+ + K LNG ++ K
Sbjct: 129 YDTFSIFGNILSCKIAMDASGLS-KGYGFVQFENEESAQSAIDK----LNGMLLNDK 180
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
++F+GG+ + TE ++RE A+G + I++D+ TG ++G+GF ++ DPAV DI
Sbjct: 179 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 234
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
++F+GG+ + TE ++RE A+G + I++D+ TG ++G+GF ++ DPAV DI
Sbjct: 136 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 191
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++ + +E +R F YG +VE V+++D+ TG +G V +S AD+ IK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 67 KHNI-----DGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
N + V + A + ++ L ++ P K++VG + + ++ +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE---AVDKVLLKTF 168
++ F +G I DVVV+ R RG+GF+ + + E A K L +TF
Sbjct: 195 IEEIFSPYGHIEDVVVL------RNRGYGFVKFYNREMALAAIKGLDRTF 238
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M + LF+ G+S TT E LRE F +GEVV A ++ DR +G ++GFGFV + A
Sbjct: 46 MAEPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKY---ATL 102
Query: 61 DIVIKEKHNIDGRMVE-----AKKAVPR 83
+ K +DG+ +E A+ A PR
Sbjct: 103 EDAAKGIEGMDGKFLEGWVIFAEYARPR 130
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+++ TTEE+L E FS YG VV+A I+ ++ R +GFG+V F++ A K
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEAR---KA 89
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS 93
+ ++G++ K V + + L RNS
Sbjct: 90 QIGMNGKVRTYKPKVSKHSLSEL-RNS 115
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ D TE+ LR+ FS G V E +M + T + +GF F+ F + A + E
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 67 KHN--IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N I+G+ P D L ++G + T T+ K+
Sbjct: 275 LKNPVINGKQC---GVTPSQDSDTL-------------------YLGNICKTWTKEALKE 312
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 313 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 167 TFHE-LNGKMV 176
+ +NGK
Sbjct: 275 LKNPVINGKQC 285
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ D TE+ LR+ FS G V E +M + T + +GF F+ F + A + E
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 67 KHN--IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N I+G+ P D L ++G + T T+ K+
Sbjct: 275 LKNPVINGKQC---GVTPSQDSDTL-------------------YLGNICKTWTKEALKE 312
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 313 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 167 TFHE-LNGKMV 176
+ +NGK
Sbjct: 275 LKNPVINGKQC 285
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ D TE+ LR+ FS G V E +M + T + +GF F+ F + A + E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 67 KHN--IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N I+G+ P D L ++G + T T+ K+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDTL-------------------YLGNICKTWTKEALKE 313
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 314 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 167 TFHE-LNGKMV 176
+ +NGK
Sbjct: 276 LKNPVINGKQC 286
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ D TE+ LR+ FS G V E +M + T + +GF F+ F + A + E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 67 KHN--IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N I+G+ P D L ++G + T T+ K+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDTL-------------------YLGNICKTWTKEALKE 313
Query: 125 YFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITYDS 156
+G + D+ ++ D N + RGF F+ + S
Sbjct: 314 KLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
++FVGGL TE D +K F + G +T+V +M + T++ +GF F+ +++ E + + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 167 TFHE-LNGKMV 176
+ +NGK
Sbjct: 276 LKNPVINGKQC 286
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F GE+ +++++ T ++ G+GF+ F+ A A+ V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ-- 119
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G ++ R + S S GP T IFVG LA+ VT+ ++ F
Sbjct: 120 -TYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT--IFVGDLAADVTDYLLQETFR 176
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
++ ++ V+ D T R +G+GF+ + E ++ E+ G + + P +
Sbjct: 177 ARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE----QMRAMTEMQGVLCSTR---PMRI 229
Query: 187 SPGPSRSP 194
P +++P
Sbjct: 230 GPATNKNP 237
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F GE+ +++++ T ++ G+GF+ F+ A A+ V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ-- 119
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G ++ R + S S GP T IFVG LA+ VT+ ++ F
Sbjct: 120 -TYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT--IFVGDLAADVTDYLLQETFR 176
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
++ ++ V+ D T R +G+GF+ + E ++ E+ G + + P +
Sbjct: 177 ARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE----QMRAMTEMQGVLCSTR---PMRI 229
Query: 187 SPGPSRSP 194
P +++P
Sbjct: 230 GPATNKNP 237
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+T+K+FV GL+ +E + F+ FG + +V V+ D ++R +G+ FI Y +EEA
Sbjct: 190 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAA 249
Query: 164 LLKTFHELNGKM-------VEVKRAVPKELSPGPSR 192
L E+NGK+ V+V + P + G +R
Sbjct: 250 L----KEMNGKIINGWMIVVDVAKTTPPRYNKGHAR 281
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+ G+S+ T+E+ LR F +GE+VE ++ D+ + R++G+ F+ ++ A +KE
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 67 KHN--IDGRMV---EAKKAVPR 83
+ I+G M+ AK PR
Sbjct: 253 MNGKIINGWMIVVDVAKTTPPR 274
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ DTTEE L++ F GEV+E + K+ +T + RG+ V F++ A + E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 67 KHNIDGRMVEAKKA--VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N ++ K+ P +D L F+G + +T T+ K+
Sbjct: 479 MKNP---VIRGKRCGTSPSEDNDTL-------------------FLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+++ TTEE+L E FS YG VV+A I+ ++ R +GFG+V F++ A K
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEAR---KA 89
Query: 67 KHNIDGRMVEAK 78
+ ++G+++ +
Sbjct: 90 QIGMNGKILHGR 101
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ DTTEE L++ F GEV+E + K+ +T + RG+ V F++ A + E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 67 KHNIDGRMVEAKKA--VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N ++ K+ P +D L F+G + +T T+ K+
Sbjct: 479 MKNP---VIRGKRCGTSPSEDNDTL-------------------FLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ DTTEE L++ F GEV+E + K+ +T + RG+ V F++ A + E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 67 KHNIDGRMVEAKKA--VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
N ++ K+ P +D L F+G + +T T+ K+
Sbjct: 479 MKNP---VIRGKRCGTSPSEDNDTL-------------------FLGNICNTWTKEAVKQ 516
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITY 154
+G + ++ ++ D + RGF F+ +
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V++D AV DI
Sbjct: 361 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACAA 420
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVT------ 118
+ I + + ++A Q + S +H + IF L +T
Sbjct: 421 LNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNA 480
Query: 119 --------ESDFKKYFD-------QFGTITDVVV 137
+ DF++ D +FG++ +VV+
Sbjct: 481 VAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVI 514
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++ G+S+ TTEE LR F +G++V+ ++ D+ R RGF F+ ++ + I+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 67 KHN--IDGRMVEAKKAVPRDD 85
H +DGR++ + A PR +
Sbjct: 156 MHGKFLDGRVIFVEVAKPRSE 176
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+++V GL+ TE + F FG + DV ++ D RPRGF F+ Y +EE K ++
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKA-IE 154
Query: 167 TFH--ELNGKMVEVKRAVPK-ELSPG 189
H L+G+++ V+ A P+ EL G
Sbjct: 155 GMHGKFLDGRVIFVEVAKPRSELRQG 180
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F GE+ +++++ T ++ G+GF+ F+ A A+ V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ-- 119
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G ++ R + S S GP T IFVG LA+ VT+ ++ F
Sbjct: 120 -TYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT--IFVGDLAADVTDYLLQETFR 176
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
++ ++ V+ D T R +G+GF+ + E ++ E+ G + + P +
Sbjct: 177 ARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQ----MRAMTEMQGVLCSTR---PMRI 229
Query: 187 SPGPSRSP 194
P +++P
Sbjct: 230 GPATNKNP 237
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
QS + +F+G I +D TEE+L+E G V+ ++ DR TG+ +G+GF ++D +
Sbjct: 25 QSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTD---EE 81
Query: 62 IVIKEKHNIDG 72
+ + N+ G
Sbjct: 82 TALSARRNLQG 92
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F YG+VV+ I KDR TG +RGF FV + AD
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRY---KYADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F YG+VV+ I KDR TG +RGF FV + AD
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRY---KYADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F YG+VV+ I KDR TG +RGF FV + AD
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRY---KYADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F YG+VV+ I KDR TG +RGF FV + AD
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRY---KYADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167
++V GL+S VTE D +++F + G + ++ + T+ RGF F+T D+ E ++ +K
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRC-IKY 191
Query: 168 FHE--LNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYG 225
++ L G+ + V+R+ K R+P G+ GL + G G GG+G
Sbjct: 192 LNQSILEGRYITVERSKRKR-----PRTPTPGHYLGLKNTRDY--GPRGGDRGRHQGGFG 244
Query: 226 L-----RMDGRFSPVAGGRSGFAPLGSGYG 250
R SP G R ++P S YG
Sbjct: 245 RDDYPYHRSPRRSPYRGSRD-YSPRHSPYG 273
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
PG T ++V GL+S VT+ D + +F + G + ++ + T+ RGF F+T DS E +
Sbjct: 60 PGNT--LYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAE 117
Query: 162 KVLLKTFHE-LNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSF 208
+ + L G+ + V+R+ K +R+P G+ GL +
Sbjct: 118 RCIKHLNQSVLEGRYITVERSRRKR-----ARTPTPGHYLGLKNTRDY 160
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167
++V GL+ +T+ + +K+F G + DV ++ D T+ RGFGF+T D+ E D+ +K
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRC-VKY 105
Query: 168 FHE--LNGKMVEVKRA 181
+ L G+++ V++A
Sbjct: 106 LNRSVLEGRVITVEKA 121
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK-- 65
L++ G+S T+ L ++FSA G+VV+ ++ D T +RGFGFV AD +K
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 66 EKHNIDGRMVEAKKA 80
+ ++GR++ +KA
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD-- 61
D+ L+IG + ++ L + F +GE+V A ++KDR TG ++G+GFV ++D +A+
Sbjct: 449 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNA 508
Query: 62 IVIKEKHNIDGRMVEAKKA 80
IV + ++GR + + A
Sbjct: 509 IVAMNGYRLEGRTIAVRVA 527
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+D L + I++ TT + L F YG+VV+ I +DR TG +RGF FV + AD
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYK---YADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+D L + I++ TT + L F YG+VV+ I +DR TG +RGF FV + AD
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYK---YADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+D L + I++ TT + L F YG+VV+ I +DR TG +RGF FV + AD
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYK---YADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
+D L + I++ TT + L F YG+VV+ I +DR TG +RGF FV + AD
Sbjct: 13 ADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYK---YADE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGRMV+ ++
Sbjct: 70 ASKAVDRLDGRMVDGRE 86
>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
chr8:37630582-37636333 | 20130731
Length = 216
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
R +FVG + T + +++F GT+ V ++ D Q P+GF ++ + EAV + L
Sbjct: 87 ARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVETEAVQEAL 145
Query: 165 LKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGY-SYGLNRVNSFLN-GFTQGYTP 218
L + EL+G+ ++V P R+ + G Y R N ++ GF + Y P
Sbjct: 146 LLSESELHGRQLKVL----------PKRTNVPGMKQYRPRRFNPYMAYGFRRPYAP 191
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S+ +LF+ + + TTEE L E+FS +G V + ++ T R++G F+ FS P A
Sbjct: 175 SEPCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAAR 234
Query: 63 VIKEKHN--IDGRMV 75
++E +N GR++
Sbjct: 235 ALEESNNSIFQGRLL 249
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S+ +LF+ + + TTEE L E+FS +G V + ++ T R++G F+ FS P A
Sbjct: 189 SEPCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAAR 248
Query: 63 VIKEKHN--IDGRMV 75
++E +N GR++
Sbjct: 249 ALEESNNSIFQGRLL 263
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 409 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 466
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 411 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 468
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
++VGGLA V ES F FG I DV D TQ+ R FGF+T+ D+ A+D +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPS 191
EL G+++ V A+P+++ G
Sbjct: 72 ---DGAELYGRVLTVNYALPEKIKGGEQ 96
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 409 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 466
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 411 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 468
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 411 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 468
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 411 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 468
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE +G + ++KDR TG ++G+ F V+ D AV DI
Sbjct: 409 RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 466
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+++V GL+ TE + F FG + DV ++ D RPRGF F+ Y +EE K +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAI 153