Miyakogusa Predicted Gene

Lj2g3v3337340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337340.1 Non Characterized Hit- tr|C0PDX0|C0PDX0_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.4,8e-19,no
description,NULL; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; SUBFAMILY NOT ,gene.g44622.t1.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g097150.1 | F-box SNE-like protein | HC | chr5:42533473-42...   196   1e-50
Medtr1g072360.2 | F-box GID2-like protein | HC | chr1:32114290-3...    59   2e-09
Medtr1g072360.1 | F-box GID2-like protein | HC | chr1:32114290-3...    59   2e-09
Medtr3g102470.1 | F-box GID2-like protein | HC | chr3:47222449-4...    54   6e-08

>Medtr5g097150.1 | F-box SNE-like protein | HC |
           chr5:42533473-42534033 | 20130731
          Length = 166

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 111/152 (73%), Gaps = 5/152 (3%)

Query: 6   TRRNKRHNNFSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHV 65
           T++  + + F INDNIDILRE+LKRLDGPSLGVA+CVCRLW +L + DDS+WEHLCFRHV
Sbjct: 20  TQQQSKRHKFFINDNIDILREILKRLDGPSLGVASCVCRLWCNLTTKDDSIWEHLCFRHV 79

Query: 66  SSPPPDSVRAVVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSLFCVDS 125
           S+PPP SVR VVVALGGY+RLYMVCVRPVLSRLG+S             QLSLSLFC+DS
Sbjct: 80  STPPPASVRPVVVALGGYKRLYMVCVRPVLSRLGESEMVRKQVWTRHEVQLSLSLFCIDS 139

Query: 126 YERLXXXXXXXXXXXXXXXXXXLMFLCNPINV 157
           YERL                  L+FLCNPINV
Sbjct: 140 YERL-----AGGMVASDAAASSLIFLCNPINV 166


>Medtr1g072360.2 | F-box GID2-like protein | HC |
           chr1:32114290-32110483 | 20130731
          Length = 393

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 20  NIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVA 79
           N D+  ++L+RLDGP+L   AC C  + S+ S ++SLWE++C     S   + V++++ +
Sbjct: 33  NSDLFYDILRRLDGPALASLACTCAAFCSI-SKEESLWENVCASVWPSTKREDVKSLISS 91

Query: 80  LGGYRRLYMVCVRPVLSR 97
           +GG+R+ Y  C   ++++
Sbjct: 92  IGGFRKFYADCFPLIVNK 109


>Medtr1g072360.1 | F-box GID2-like protein | HC |
          chr1:32114290-32110469 | 20130731
          Length = 373

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 20 NIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVA 79
          N D+  ++L+RLDGP+L   AC C  + S+ S ++SLWE++C     S   + V++++ +
Sbjct: 13 NSDLFYDILRRLDGPALASLACTCAAFCSI-SKEESLWENVCASVWPSTKREDVKSLISS 71

Query: 80 LGGYRRLYMVCVRPVLSR 97
          +GG+R+ Y  C   ++++
Sbjct: 72 IGGFRKFYADCFPLIVNK 89


>Medtr3g102470.1 | F-box GID2-like protein | HC |
           chr3:47222449-47221292 | 20130731
          Length = 174

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 22  DILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSP--PPDSVRAVVVA 79
           ++L EVLK +D  +L +++CV + W   A  D+ LWE +C +  ++       +R+VV+A
Sbjct: 42  NMLFEVLKHVDARTLAMSSCVNKQWHKTA-QDERLWELICTKQWANTGCGEQQLRSVVLA 100

Query: 80  LGGYRRLYMVCVRPV 94
           LGG+RRL+ + + P+
Sbjct: 101 LGGFRRLHSLYLLPL 115