Miyakogusa Predicted Gene

Lj2g3v3317710.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3317710.2 Non Characterized Hit- tr|I1QRT8|I1QRT8_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,84.38,0,G-patch,G-patch domain; glycine rich nucleic binding
domain,G-patch domain; G_PATCH,G-patch domain; ,CUFF.40035.2
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g036890.1 | suppressor-of-white-APricot splicing regulator...   264   3e-71
Medtr8g036890.2 | suppressor-of-white-APricot splicing regulator...   264   3e-71
Medtr8g036255.1 | SURP and G-patch domain protein | HC | chr8:13...   147   6e-36
Medtr8g036260.1 | suppressor-of-white-APricot splicing regulator...    57   7e-09

>Medtr8g036890.1 | suppressor-of-white-APricot splicing regulator |
           HC | chr8:13445831-13440568 | 20130731
          Length = 439

 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 146/166 (87%), Gaps = 9/166 (5%)

Query: 1   MEFYMKKAAREERSKQPKQSKDEMPPPASLQG---------KKGHHMGDYIPLEELEKFM 51
           MEFYMKKAA+EE+ KQP+ SKDEMPPP SLQG         KKGHHMGDYIP EELEKF+
Sbjct: 274 MEFYMKKAAQEEKFKQPRHSKDEMPPPPSLQGSTYDASASGKKGHHMGDYIPQEELEKFL 333

Query: 52  ASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKK 111
           ASCNDA A K  KE AE+AKIQA NVGHKLLSKMGWKEGEGLGGSRKGI+DPIMAG+VKK
Sbjct: 334 ASCNDAAAMKAAKEAAERAKIQAYNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGSVKK 393

Query: 112 DHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 157
           D+LGVGAVQPGEVT EDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
Sbjct: 394 DNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 439


>Medtr8g036890.2 | suppressor-of-white-APricot splicing regulator |
           HC | chr8:13445831-13440568 | 20130731
          Length = 438

 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 146/166 (87%), Gaps = 9/166 (5%)

Query: 1   MEFYMKKAAREERSKQPKQSKDEMPPPASLQG---------KKGHHMGDYIPLEELEKFM 51
           MEFYMKKAA+EE+ KQP+ SKDEMPPP SLQG         KKGHHMGDYIP EELEKF+
Sbjct: 273 MEFYMKKAAQEEKFKQPRHSKDEMPPPPSLQGSTYDASASGKKGHHMGDYIPQEELEKFL 332

Query: 52  ASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKK 111
           ASCNDA A K  KE AE+AKIQA NVGHKLLSKMGWKEGEGLGGSRKGI+DPIMAG+VKK
Sbjct: 333 ASCNDAAAMKAAKEAAERAKIQAYNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGSVKK 392

Query: 112 DHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 157
           D+LGVGAVQPGEVT EDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
Sbjct: 393 DNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 438


>Medtr8g036255.1 | SURP and G-patch domain protein | HC |
           chr8:13423681-13423062 | 20130731
          Length = 73

 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/73 (94%), Positives = 72/73 (98%)

Query: 85  MGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRH 144
           MGWKEGEGLGGSRKGI+DPIMAG+VKKD+LGVGAVQPGEVT EDDIYEQYKKRMMLGYRH
Sbjct: 1   MGWKEGEGLGGSRKGIADPIMAGSVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRH 60

Query: 145 RPNPLNNPRKAYY 157
           RPNPLNNPRKAYY
Sbjct: 61  RPNPLNNPRKAYY 73


>Medtr8g036260.1 | suppressor-of-white-APricot splicing regulator,
           putative | HC | chr8:13428137-13425082 | 20130731
          Length = 362

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query: 1   MEFYMKKAAREERSKQPKQSKDEMPPPASLQG 32
           MEFYMKKAA+EE+ KQP+ SKDEMPPP SLQG
Sbjct: 274 MEFYMKKAAQEEKFKQPRHSKDEMPPPPSLQG 305