Miyakogusa Predicted Gene

Lj2g3v3303470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3303470.1 tr|G7KEH7|G7KEH7_MEDTR Ribosomal RNA small
subunit methyltransferase OS=Medicago truncatula
GN=MTR_5,88.02,0,rsmB: ribosomal RNA small subunit
methyltransferas,rRNA small subunit methyltransferase B;
RCMTFMUVI,CUFF.39959.1
         (528 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase ...   942   0.0  
Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative |...   117   3e-26
Medtr5g095140.1 | ribosomal RNA small subunit methyltransferase ...   109   5e-24
Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative |...    84   4e-16
Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik...    70   4e-12
Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik...    67   4e-11
Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC | chr5:39705...    62   1e-09

>Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase B |
           HC | chr5:41982400-41975357 | 20130731
          Length = 529

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/528 (87%), Positives = 488/528 (92%), Gaps = 3/528 (0%)

Query: 1   MAQGLSLVSPFPTEPQKXXXXXIL-LKLPHRTRSTNTSI-PTTNKGPANRSLKPQKLNSE 58
           MA+ + +  PF T+P K         KL HRT STN SI  +TN G ANRS+KPQKLNS+
Sbjct: 1   MAKVVYMGVPFLTQPHKTTITSSKPFKLSHRTHSTNISILSSTNNGSANRSVKPQKLNSD 60

Query: 59  ISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVT 118
           ISPHRAVSAVRLMRIE GGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELN+ DLRLVT
Sbjct: 61  ISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVT 120

Query: 119 DIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLEMPPYAVVDENVR 178
           +IVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKL+MPPYAVVDENV+
Sbjct: 121 EIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVQ 180

Query: 179 LAKTALRPGAGNMVNGILRKLVVLKENETLPLPKVEGDDRAQARALATLYSHPVWMVRRW 238
           LAK ALRPGAGNMVNG+LRKLVVLKENETLPLPKVEGDDR+QARALATLYSHPVW+VRRW
Sbjct: 181 LAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRW 240

Query: 239 IKCLGQEEAIKLMIWNNSEPSFSLRANSARGFSRDDLVTQLNALKVPHKLSMYLDEFVRI 298
            K LGQEEAIKLMIWNN EPS+SLRAN A+GFSRDDLVT+LNALKVPHKLS++LD+FVRI
Sbjct: 241 TKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLDDFVRI 300

Query: 299 KTGLQIIIHAGLLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSG 358
           KTGLQIIIHAGL K+GLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMA+HLSG
Sbjct: 301 KTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMAAHLSG 360

Query: 359 QGMIYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTEDSGPLKSNKVLLDAPCSG 418
           QGM+YAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLT D  PLKSNKVLLDAPCSG
Sbjct: 361 QGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLT-DGEPLKSNKVLLDAPCSG 419

Query: 419 LGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIA 478
           LGVLSKRADLRWNRKLEDMEQLKKLQDELLDAAS LV PGGVLVYSTCSIDPEEND+R+A
Sbjct: 420 LGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVA 479

Query: 479 AFLVRHPDFHIDPVDRYVPPDFVTHSGFYFSNPVKHSLDGSFAARLVR 526
           AFL RH DFHIDPVDRYVPPDFVT  GFY SNPVKHSLDGSFAARLVR
Sbjct: 480 AFLERHADFHIDPVDRYVPPDFVTPKGFYSSNPVKHSLDGSFAARLVR 527


>Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
           | chr3:23817126-23809675 | 20130731
          Length = 657

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 26/230 (11%)

Query: 314 GLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLR 373
           G   +Q  S+ L V  + PQ  E IVD  AAPGGKT Y+A+ +   G+I+A ++   RL+
Sbjct: 291 GFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLK 350

Query: 374 ILKETAKLHQVDGVVTTV--HADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLRWN 431
            L  TA LH++ GV  TV  + D + L +  G    ++VLLDAPCSG GV+SK   ++ +
Sbjct: 351 SL--TANLHRM-GVSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTS 407

Query: 432 RKLEDMEQLKKLQDELLDAASKLVN----PGGVLVYSTCSIDPEENDERIAAFLVRHPDF 487
           + LED+++   LQ ELL AA  +V+     GG +VYSTCSI   EN E +  ++++  D 
Sbjct: 408 KNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAEN-EAVIDYVLKRRDV 466

Query: 488 HIDPV-------------DRYVPPDFVTHSGFYFSNPVKHSLDGSFAARL 524
            + P              ++   P       FY   P  H++DG F A+L
Sbjct: 467 KLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFY---PHVHNMDGFFVAKL 513


>Medtr5g095140.1 | ribosomal RNA small subunit methyltransferase B,
           putative | HC | chr5:41582040-41582839 | 20130731
          Length = 103

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 65/97 (67%), Gaps = 17/97 (17%)

Query: 176 NVRLAKTALRPGAGNMVNGILRKLVVLK---------ENETLPLPKVEGDDRAQARALAT 226
           NV LAK ALR GA +MVNGI+RK VVL+         ENE  PLPKV         AL T
Sbjct: 3   NVHLAKAALRLGADHMVNGIIRKPVVLRFYFLHITYPENEMFPLPKVH--------ALET 54

Query: 227 LYSHPVWMVRRWIKCLGQEEAIKLMIWNNSEPSFSLR 263
           LYSHPVW+VRRW K LGQEE + L IWNNSEP +SLR
Sbjct: 55  LYSHPVWVVRRWTKYLGQEETVNLTIWNNSEPIYSLR 91


>Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
           | chr3:48292253-48297828 | 20130731
          Length = 509

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 8/179 (4%)

Query: 310 LLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNS 369
           L+K G   +Q +++ ++   + P+PG  ++D CAAPG KT+++A+ +  +G I A ++  
Sbjct: 220 LVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKK 279

Query: 370 GRLRILKETAKLHQVDGVVTTVHADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLR 429
            R++ L +T KL     +       L   ++D    K   +LLD  CSG G  + R D  
Sbjct: 280 ERIKRLNDTIKLSGATNIQVLNEDFLNINSKDPAYSKVKAILLDPSCSGSGTAASRLDHL 339

Query: 430 WNRKLE----DMEQLKKL---QDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFL 481
              K      DME+L KL   Q + L  A  L      +VYSTCSI+  EN++ + + L
Sbjct: 340 LPSKAAGQNVDMERLNKLAAFQRKALQHAF-LFPALERVVYSTCSINQIENEDVVKSVL 397


>Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
           protein | HC | chr3:39418089-39425597 | 20130731
          Length = 784

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 79/178 (44%), Gaps = 25/178 (14%)

Query: 329 IVDPQPGETIVDCCAAPGGKTLYMAS--HLSGQ------GMIYAVDVNSGRLRILKETAK 380
            +D      ++D CAAPG KT  +    H S +      GM+ A D++  R  +L    K
Sbjct: 169 FLDVHSNHVVLDMCAAPGSKTFQLLEILHRSTKAGSLPDGMVVANDLDVQRCNLLIHQIK 228

Query: 381 LHQVDGVVTTVH-------ADLRTLTEDSGPLKSN------KVLLDAPCSGLGVLSKRAD 427
                 ++ T H         L    +  GP + N      +VL D PCSG G L K  D
Sbjct: 229 RMCTANLIVTNHEAQHFPRCQLNMDCDIMGPDQHNSQLLFDRVLCDVPCSGDGTLRKAPD 288

Query: 428 L--RWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFLVR 483
           L  RWN    +   L  LQ  +      L+  GG +VYSTCSI+P EN+  IA  L R
Sbjct: 289 LWRRWNTGTGN--GLHNLQILVAMRGLSLLKVGGRMVYSTCSINPIENEAVIAEILRR 344


>Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
           protein | HC | chr8:37616552-37624367 | 20130731
          Length = 818

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 25/178 (14%)

Query: 329 IVDPQPGETIVDCCAAPGGKTLYMAS--HLSGQ------GMIYAVDVNSGRLRIL-KETA 379
            +D      ++D CAAPG KT  +    H S +      GM+ A D++  R  +L  +T 
Sbjct: 176 FLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVVANDLDVKRCNLLIHQTK 235

Query: 380 KLHQVDGVVTTVHA------------DLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRAD 427
           ++   + +VT   A            D   L  +   L  ++VL D PCSG G L K  D
Sbjct: 236 RMCTANLIVTNHEAQHFPGCRLKGNYDRMELDHNIHQLLFDRVLCDVPCSGDGTLRKAPD 295

Query: 428 L--RWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFLVR 483
           +  +WN  L   + L  LQ  +      L+  GG +VYSTCS++P EN+  +A  L R
Sbjct: 296 MWRKWNSGLG--QGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRR 351


>Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC |
           chr5:39705460-39695039 | 20130731
          Length = 606

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 404 PLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVY 463
           P   ++VLLDAPCS LG+  +         +E +    K Q  + D A +LV PGGV+VY
Sbjct: 462 PDSFDRVLLDAPCSALGLRPRL--FAGEDTIESLRSHAKYQRRMFDQAVQLVRPGGVIVY 519

Query: 464 STCSIDPEENDERIAAFLVRHPDFHIDP 491
           STC+I+P EN+  +   L ++    + P
Sbjct: 520 STCTINPGENEALVRYALDKYKYLSLAP 547