Miyakogusa Predicted Gene

Lj2g3v3303460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3303460.1 tr|F4K694|F4K694_ARATH RPM1-interacting protein 4
(RIN4) family protein OS=Arabidopsis thaliana
GN=N,67.53,2e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39956.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family prote...   135   1e-32
Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family prote...    77   3e-15
Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family prote...    72   9e-14
Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family prote...    69   1e-12
Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein ...    60   5e-10
Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein ...    60   5e-10
Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family prote...    56   7e-09
Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein ...    54   2e-08
Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein ...    54   3e-08
Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein ...    54   3e-08
Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family prote...    51   3e-07

>Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr5:41984600-41987102 | 20130731
          Length = 76

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 67/75 (89%)

Query: 4  DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGKTQ 63
          DK RPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKP+SP K ++ TRPPL+H KT 
Sbjct: 2  DKGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPESPAKANTQTRPPLEHAKTH 61

Query: 64 SKSWFCCVQSPPAES 78
           KSWFCC+ SPPAES
Sbjct: 62 GKSWFCCLHSPPAES 76


>Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr8:37224822-37225345 | 20130731
          Length = 75

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 4  DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSH---TRPPLDHG 60
          +  RPLPKFGEWDVNDPASAEG+TVIFNKARDEKKTGG     G+V+S    +    D  
Sbjct: 6  NNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG--GGSGRVNSQRLRSNSRKDDD 63

Query: 61 KTQSKSWFC 69
          K+  K WFC
Sbjct: 64 KSSKKKWFC 72


>Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr4:43086977-43089894 | 20130731
          Length = 108

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 35/38 (92%)

Query: 3  SDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTG 40
           DK RPLPKFGEWDVN+PASAEG+TVIFNKARDEKKT 
Sbjct: 18 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTN 55


>Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr3:38988227-38988508 | 20130731
          Length = 93

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 7  RPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTG---GKPDSPGKVDSHTRPPLDHGKTQ 63
          +PLPKFGEWDVNDP+SAEG+TVIFNKARD+KK     G+  S  + DS T    D+ K  
Sbjct: 11 KPLPKFGEWDVNDPSSAEGFTVIFNKARDDKKIASASGRFPSQRRYDSRTGRTNDNNKNL 70

Query: 64 SKS 66
            S
Sbjct: 71 KAS 73


>Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947090-3941471 | 20130731
          Length = 260

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 4   DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGKTQ 63
           DK   +PKFG+WDV++PASA+GYT IFNK R+E++ GG   +PG  +   RP +   +  
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQ-GGAGHAPGTPNE--RPHVIRNQNN 247

Query: 64  SKSWFCC 70
            K+  CC
Sbjct: 248 DKAQCCC 254


>Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947114-3943191 | 20130731
          Length = 260

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 4   DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGKTQ 63
           DK   +PKFG+WDV++PASA+GYT IFNK R+E++ GG   +PG  +   RP +   +  
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQ-GGAGHAPGTPNE--RPHVIRNQNN 247

Query: 64  SKSWFCC 70
            K+  CC
Sbjct: 248 DKAQCCC 254


>Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr5:43039189-43038020 | 20130731
          Length = 98

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 10 PKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSP---GKVDSHTRPPLDHGKTQSKS 66
          PKFGEWD ND +SA GYTVIFNK ++EK+ GGK  SP      ++H R     GKT S S
Sbjct: 4  PKFGEWDANDSSSANGYTVIFNKIKEEKR-GGKFQSPPNNSASNAHKRKDF-LGKTLSVS 61


>Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 211

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 4   DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKT--GGKPDSP 46
           DK   +PKFGEWD +DPASA+GYT IFNK R+EK    G  P +P
Sbjct: 141 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTP 185


>Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 248

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 4   DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKT--GGKPDSP 46
           DK   +PKFGEWD +DPASA+GYT IFNK R+EK    G  P +P
Sbjct: 178 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTP 222


>Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567302-19571423 | 20130731
          Length = 249

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 4   DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKT--GGKPDSP 46
           DK   +PKFGEWD +DPASA+GYT IFNK R+EK    G  P +P
Sbjct: 179 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTP 223


>Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr2:8954695-8955548 | 20130731
          Length = 192

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 8   PLPKFGEWDVNDPASAEGYTVIFNKARDEK-----KTGGKPDSPGKVDSHTRPPLDHGKT 62
            +P+FG+WDV DP S EGYTV+F+K ++EK     +  G   +P    S+ +   D G +
Sbjct: 118 AIPEFGKWDVTDPKSGEGYTVMFSKIKEEKQIMSSRISGLRTTPHNNGSNIKNQHD-GSS 176

Query: 63  QSKSWFCCVQS 73
            + S +CC  S
Sbjct: 177 FNLSKYCCCLS 187