Miyakogusa Predicted Gene

Lj2g3v3260160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3260160.1 tr|Q2HTB8|Q2HTB8_MEDTR Harpin-induced 1
OS=Medicago truncatula GN=MTR_7g118270 PE=4
SV=1,57.47,0.000000000001,seg,NULL,
NODE_48089_length_1057_cov_104.220436.path2.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g118270.1 | late embryogenesis abundant protein | HC | chr...    78   2e-15

>Medtr7g118270.1 | late embryogenesis abundant protein | HC |
          chr7:49087219-49088602 | 20130731
          Length = 229

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 10/87 (11%)

Query: 1  MEEDPN----PPKGQNQHHHLPPPNKIQMNNHKAXXXXXXXXXXXXXXKRAACTFITVFL 56
          MEE+ +    PP   NQ HHLPP +K+QMN  K                RA  TF+T+FL
Sbjct: 1  MEENQSSQSQPP---NQQHHLPP-DKLQMN--KPAGPPPSSSYGTSSSGRAFATFLTIFL 54

Query: 57 LAVGITLLVLWLVYRPHKPRFTAVGAA 83
          L +G+TLLVLWLVYRPHKP FT VGAA
Sbjct: 55 LLIGVTLLVLWLVYRPHKPHFTVVGAA 81