Miyakogusa Predicted Gene
- Lj2g3v3260050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3260050.1 Non Characterized Hit- tr|A9P1T0|A9P1T0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.74,0.000000000000002,RNA recognition motif,RNA recognition motif
domain; RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAME,NODE_45338_length_580_cov_92.408623.path2.1
(152 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 143 8e-35
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 6e-13
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 6e-13
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 6e-13
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 68 3e-12
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 65 3e-11
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 63 1e-10
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 59 2e-09
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 59 2e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 57 6e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 56 1e-08
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 5e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 5e-07
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 49 1e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 3e-06
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 3e-06
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 47 5e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 9e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 9e-06
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 103/153 (67%), Gaps = 31/153 (20%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F PHGT++S EVCR+A++GESKG AYVTM S +AKNA++ALDG DVGGREM V+FSV
Sbjct: 62 LFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALAALDGSDVGGREMLVKFSV- 120
Query: 61 VNPRGRNLETMNSSP--RRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
ET+NS P RRTIYYE PHK+YVGNL +G + V
Sbjct: 121 --------ETLNSPPMRRRTIYYEGPHKVYVGNL---------------WGKKSRVYAFV 157
Query: 119 DLKQGPYLSERERDAAMSLNGTEFCGRKIVVRQ 151
YLS+RERDA+MSLNGTEFCGR +VVR+
Sbjct: 158 S-----YLSQRERDASMSLNGTEFCGRTLVVRE 185
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+ +G+ EV +G+S+G A+VTMS + + LDG + GR +RV FS +
Sbjct: 132 LIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK 191
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
P+ P+ +Y E +KL+VGNLA + T E + F G V R+L D
Sbjct: 192 --PK----------PKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDG 239
Query: 121 KQG--------PYLSERERDAAMS-LNGTEFCGRKIVV 149
+ G Y ++ E D A++ ++ E GR + V
Sbjct: 240 ETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 13/159 (8%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F G ++S E+ + S+G A+VTM ++ A+ A+ DG VGGR ++V F E
Sbjct: 127 LFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFP-E 185
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
V G+ ++ M S+ R Y ++PHK+Y GNL T + +R FA+ + S +++ +
Sbjct: 186 VPIVGKRVQ-MGSTYRG--YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYER 242
Query: 121 KQG--------PYLSERERDAAMS-LNGTEFCGRKIVVR 150
G + + + + A+S +NG E GR + ++
Sbjct: 243 NNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 13/159 (8%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F G ++S E+ + S+G A+VTM ++ A+ A+ DG VGGR ++V F E
Sbjct: 127 LFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFP-E 185
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
V G+ ++ M S+ R Y ++PHK+Y GNL T + +R FA+ + S +++ +
Sbjct: 186 VPIVGKRVQ-MGSTYRG--YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYER 242
Query: 121 KQG--------PYLSERERDAAMS-LNGTEFCGRKIVVR 150
G + + + + A+S +NG E GR + ++
Sbjct: 243 NNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F GT++S E+ + S+G A+VTM S AK A+ DG VGGR +V F E
Sbjct: 128 IFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFP-E 186
Query: 61 VNPRGRNLETMNSSPRRTI--YYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
V P+G M R + + ++PHK+Y GNL +D+R F + +++
Sbjct: 187 V-PKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIY 245
Query: 119 DLKQG--------PYLSERERDAAM-SLNGTEFCGRKI 147
+ G + + +AA+ ++NG E GR +
Sbjct: 246 ERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPL 283
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+ + HG + AEV S S+ A+VTM ++ A A L+G ++GGRE++V
Sbjct: 79 IVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTEIGGREIKVN---- 134
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRL 116
+ + E + + + ++P+K+YVGNLA + T + ++ F+ GN S ++
Sbjct: 135 ITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKV 190
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F GT+ AEV + Q+ S+G +VTMS++ A++AV +G D GR + V +
Sbjct: 128 LFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVN---K 184
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
+P+G E +PR +E ++YV NLA + +F+ G + S R++ D
Sbjct: 185 ASPKGSRPERTERAPRT---FEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDR 241
Query: 121 KQG--------PYLSERE-RDAAMSLNGTEFCGRKIVV 149
+ G E E DA +L+G GR I V
Sbjct: 242 ETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F HG I+SA V ++G S+G +VTMS +A++ALDG + GR +RV + E
Sbjct: 225 VFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA-E 283
Query: 61 VNPR 64
PR
Sbjct: 284 DRPR 287
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F GT+ AEV + Q+ S+G +VTMS++ A++AV +G D GR + V +
Sbjct: 128 LFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVN---K 184
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
+P+G E +PR +E ++YV NLA + +F+ G + S R++ D
Sbjct: 185 ASPKGSRPERTERAPRT---FEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDR 241
Query: 121 KQG 123
+ G
Sbjct: 242 ETG 244
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEV 61
F G ++S +V +G+SKG +V + +AK+A+ LDG+ + +++ V F V
Sbjct: 138 FAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRH 196
Query: 62 NPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
R R N SP+ T +YV N++ ++T ED++ LF FG + S +++D
Sbjct: 197 QERART----NGSPKFT-------NVYVKNISEASTDEDLKQLFGPFGMITSATVMKD 243
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEV 61
F G ++S +V +G+SKG +V + +AK+A+ LDG+ + +++ V F V
Sbjct: 138 FAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRH 196
Query: 62 NPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
R R N SP+ T +YV N++ ++T ED++ LF FG + S +++D
Sbjct: 197 QERART----NGSPKFT-------NVYVKNISEASTDEDLKQLFGPFGMITSATVMKD 243
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRV-RFSV 59
+F GT+ AEV + + S+G +VTMS+ + AV+ G ++ GR + V + +
Sbjct: 141 LFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAP 200
Query: 60 EVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
PR R T NS R YVGNL + LF+ G V S +++ D
Sbjct: 201 RGTPRLRQPRTFNSGLR----------AYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYD 250
Query: 120 LKQG--------PYLSERE-RDAAMSLNGTEFCGRKIVV 149
+ G +E E DA +L+G F GR I V
Sbjct: 251 RETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F HG + SA+V ++G S+G +VTMS+ +A++ALDG GR +RV + E
Sbjct: 235 LFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEE 294
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 16/117 (13%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEV 61
F G ++S +V + +G SKG +V + SAKNA+ LDG+ + +++ V + V
Sbjct: 133 FSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRC 191
Query: 62 NPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
R SSP+ T +YV NL+ S T ED++ LF FG + SV +++
Sbjct: 192 QER--------SSPKFT-------NVYVKNLSESYTYEDLKQLFNSFGVITSVLIMK 233
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F G + EV +G S+G +VTMSS + A L+G V GRE+RV
Sbjct: 103 IFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
Query: 61 VNPR------GRNLETMNSSPR---RTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNV 111
PR G N PR R + ++++VGNLA + LF G V
Sbjct: 163 PPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQV 222
Query: 112 ASVRLLQDLKQG--------PYLSERERDAAM-SLNGTEFCGRKIVV 149
+++ D + G + S E D+A+ +L+G + GR I V
Sbjct: 223 LEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F G + EV +G S+G +VTMSS + A L+G V GRE+RV
Sbjct: 103 IFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
Query: 61 VNPR------GRNLETMNSSPR---RTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNV 111
PR G N PR R + ++++VGNLA + LF G V
Sbjct: 163 PPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQV 222
Query: 112 ASVRLLQDLKQG--------PYLSERERDAAM-SLNGTEFCGRKIVV 149
+++ D + G + S E D+A+ +L+G + GR I V
Sbjct: 223 LEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEV 61
F GT++S +V + +G+S G +V + SAK A+ LDG+ + ++ V + +
Sbjct: 35 FATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKLDGMLIKDKKAFVGYFIR- 92
Query: 62 NPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
R + N SP+ T +YV NL + T ED++ LF+ +G + S +++D
Sbjct: 93 ----RQERSENGSPKFT-------NVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD 139
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 6 GTIISAEVCRHAQSGE--SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNP 63
G I+S +V +H ++G+ S G +V S +A + + L G + G + ++ N
Sbjct: 668 GRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKND 727
Query: 64 RGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQG 123
+ + + T KL V N+A AT +D+R LF+ FG + S+RL +K G
Sbjct: 728 DDKVQKKVEKDKSST-------KLLVKNVAFEATEKDLRQLFSPFGQIKSLRL--PMKFG 778
Query: 124 --------PYLSERE-RDAAMSLNGTEFCGRKIVVRQG 152
Y++++E ++A +L+ T GR +V+ +
Sbjct: 779 NHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERA 816
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 1 MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
+F GT+I E+ + ++ G+ KG +VTM S A+ AV + ++ GR +RV F+
Sbjct: 115 LFGQCGTVIDVEIIK-SKDGKGKGYTFVTMDSGEGAQAAVDKFNATEISGRILRVEFA-- 171
Query: 61 VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFAR-FGNVASVRLLQD 119
+ + P EA + +Y NLA A +R +F F S R++
Sbjct: 172 -----KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQ 226
Query: 120 LKQGP--------YLSERERDAAMS-LNGTEFCGRKIVVR 150
+ G Y +E E +AA+S L G E GR ++V+
Sbjct: 227 VPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVK 266
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRV-----R 56
F +GTI SA + R A G SK +V + A AV AL+G V +E V +
Sbjct: 231 FGAYGTITSAVLMRDA-DGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKK 289
Query: 57 FSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRL 116
E +GR +T+ S + LY+ NL S T E ++ +F+ FG + S ++
Sbjct: 290 SEREQELKGRFEQTVKES---VVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKI 346
Query: 117 LQD 119
++D
Sbjct: 347 MRD 349
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
F +G ++ A + ++G S+G ++T +S+ A +A+ ALDG D+ GR +RV ++ E
Sbjct: 62 FSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANE 120
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 2 FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
F +G ++ A + ++G S+G ++T +S+ A +A+ ALDG D+ GR +RV ++ E
Sbjct: 70 FSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANE 128